Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17195 and CSW01_17200 are separated by 239 nucleotides CSW01_17200 and CSW01_17205 are separated by 81 nucleotides CSW01_17205 and CSW01_17210 are separated by 218 nucleotides
CSW01_17195: CSW01_17195 - exopolyphosphatase, at 529,391 to 530,323
_17195
CSW01_17200: CSW01_17200 - DUF333 domain-containing protein, at 530,563 to 530,814
_17200
CSW01_17205: CSW01_17205 - YdcF family protein, at 530,896 to 531,849
_17205
CSW01_17210: CSW01_17210 - MFS transporter, at 532,068 to 533,540
_17210
Position (kb) 530
531
532 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 530.057 kb on - strand, within CSW01_17195 at 530.161 kb on - strand, within CSW01_17195 at 530.226 kb on - strand, within CSW01_17195 at 530.250 kb on - strand at 530.260 kb on + strand at 530.260 kb on + strand at 530.268 kb on - strand at 530.268 kb on - strand at 530.332 kb on - strand at 530.349 kb on - strand at 530.371 kb on + strand at 530.588 kb on - strand at 530.596 kb on - strand, within CSW01_17200 at 530.679 kb on + strand, within CSW01_17200 at 530.687 kb on - strand, within CSW01_17200 at 530.695 kb on - strand, within CSW01_17200 at 530.897 kb on - strand at 530.953 kb on - strand at 530.966 kb on + strand at 531.024 kb on - strand, within CSW01_17205 at 531.082 kb on + strand, within CSW01_17205 at 531.125 kb on + strand, within CSW01_17205 at 531.129 kb on + strand, within CSW01_17205 at 531.152 kb on + strand, within CSW01_17205 at 531.160 kb on - strand, within CSW01_17205 at 531.259 kb on - strand, within CSW01_17205 at 531.359 kb on + strand, within CSW01_17205 at 531.377 kb on + strand, within CSW01_17205 at 531.496 kb on + strand, within CSW01_17205 at 531.507 kb on + strand, within CSW01_17205 at 531.517 kb on + strand, within CSW01_17205 at 531.522 kb on + strand, within CSW01_17205 at 531.522 kb on + strand, within CSW01_17205 at 531.671 kb on + strand, within CSW01_17205 at 531.671 kb on + strand, within CSW01_17205 at 531.679 kb on - strand, within CSW01_17205 at 531.681 kb on + strand, within CSW01_17205 at 531.848 kb on - strand at 531.848 kb on - strand at 531.957 kb on - strand at 532.132 kb on + strand at 532.140 kb on - strand at 532.140 kb on - strand at 532.220 kb on + strand, within CSW01_17210 at 532.242 kb on + strand, within CSW01_17210 at 532.380 kb on + strand, within CSW01_17210 at 532.388 kb on - strand, within CSW01_17210 at 532.393 kb on - strand, within CSW01_17210 at 532.599 kb on + strand, within CSW01_17210 at 532.606 kb on + strand, within CSW01_17210 at 532.614 kb on - strand, within CSW01_17210 at 532.621 kb on + strand, within CSW01_17210 at 532.661 kb on - strand, within CSW01_17210 at 532.661 kb on - strand, within CSW01_17210 at 532.676 kb on + strand, within CSW01_17210 at 532.686 kb on + strand, within CSW01_17210 at 532.760 kb on - strand, within CSW01_17210 at 532.826 kb on + strand, within CSW01_17210
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B remove 530,057 - CSW01_17195 0.71 -0.8 530,161 - CSW01_17195 0.83 -0.4 530,226 - CSW01_17195 0.89 -0.1 530,250 - -0.3 530,260 + -0.3 530,260 + -0.1 530,268 - +0.4 530,268 - -0.1 530,332 - -1.6 530,349 - +0.2 530,371 + +0.1 530,588 - +1.2 530,596 - CSW01_17200 0.13 -0.3 530,679 + CSW01_17200 0.46 -0.5 530,687 - CSW01_17200 0.49 +0.5 530,695 - CSW01_17200 0.52 +0.6 530,897 - +0.2 530,953 - -0.2 530,966 + -0.9 531,024 - CSW01_17205 0.13 +0.1 531,082 + CSW01_17205 0.19 -0.7 531,125 + CSW01_17205 0.24 -0.8 531,129 + CSW01_17205 0.24 +0.7 531,152 + CSW01_17205 0.27 +2.0 531,160 - CSW01_17205 0.28 -1.2 531,259 - CSW01_17205 0.38 -0.5 531,359 + CSW01_17205 0.49 -0.6 531,377 + CSW01_17205 0.50 -0.0 531,496 + CSW01_17205 0.63 +0.8 531,507 + CSW01_17205 0.64 -3.3 531,517 + CSW01_17205 0.65 -1.6 531,522 + CSW01_17205 0.66 +0.3 531,522 + CSW01_17205 0.66 +0.3 531,671 + CSW01_17205 0.81 -0.4 531,671 + CSW01_17205 0.81 -1.0 531,679 - CSW01_17205 0.82 -0.3 531,681 + CSW01_17205 0.82 +0.3 531,848 - +0.1 531,848 - +0.0 531,957 - -0.3 532,132 + +0.6 532,140 - -0.2 532,140 - -0.1 532,220 + CSW01_17210 0.10 +0.3 532,242 + CSW01_17210 0.12 -0.1 532,380 + CSW01_17210 0.21 -2.2 532,388 - CSW01_17210 0.22 -1.3 532,393 - CSW01_17210 0.22 +0.2 532,599 + CSW01_17210 0.36 -0.4 532,606 + CSW01_17210 0.37 -0.7 532,614 - CSW01_17210 0.37 +1.8 532,621 + CSW01_17210 0.38 -0.4 532,661 - CSW01_17210 0.40 -1.1 532,661 - CSW01_17210 0.40 +0.5 532,676 + CSW01_17210 0.41 +0.6 532,686 + CSW01_17210 0.42 -0.4 532,760 - CSW01_17210 0.47 -0.1 532,826 + CSW01_17210 0.51 -1.0
Or see this region's nucleotide sequence