Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16695 and CSW01_16700 are separated by 14 nucleotides CSW01_16700 and CSW01_16705 overlap by 59 nucleotides CSW01_16705 and CSW01_16710 are separated by 135 nucleotides CSW01_16710 and CSW01_16715 are separated by 43 nucleotides CSW01_16715 and CSW01_16720 are separated by 63 nucleotides
CSW01_16695: CSW01_16695 - alpha/beta hydrolase, at 424,589 to 425,506
_16695
CSW01_16700: CSW01_16700 - hypothetical protein, at 425,521 to 425,721
_16700
CSW01_16705: CSW01_16705 - hypothetical protein, at 425,663 to 426,052
_16705
CSW01_16710: CSW01_16710 - acetyltransferase, at 426,188 to 426,472
_16710
CSW01_16715: CSW01_16715 - IS200/IS605 family transposase, at 426,516 to 426,953
_16715
CSW01_16720: CSW01_16720 - GNAT family N-acetyltransferase, at 427,017 to 427,235
_16720
Position (kb) 425
426
427 Strain fitness (log2 ratio) -2
-1
0
1
2 at 424.902 kb on + strand, within CSW01_16695 at 424.902 kb on + strand, within CSW01_16695 at 424.908 kb on - strand, within CSW01_16695 at 424.910 kb on - strand, within CSW01_16695 at 424.910 kb on - strand, within CSW01_16695 at 424.910 kb on - strand, within CSW01_16695 at 424.910 kb on - strand, within CSW01_16695 at 424.912 kb on - strand, within CSW01_16695 at 424.912 kb on - strand, within CSW01_16695 at 424.921 kb on + strand, within CSW01_16695 at 424.924 kb on + strand, within CSW01_16695 at 424.926 kb on + strand, within CSW01_16695 at 424.931 kb on + strand, within CSW01_16695 at 424.939 kb on - strand, within CSW01_16695 at 424.945 kb on + strand, within CSW01_16695 at 424.945 kb on + strand, within CSW01_16695 at 425.001 kb on + strand, within CSW01_16695 at 425.035 kb on - strand, within CSW01_16695 at 425.049 kb on + strand, within CSW01_16695 at 425.057 kb on - strand, within CSW01_16695 at 425.139 kb on + strand, within CSW01_16695 at 425.148 kb on + strand, within CSW01_16695 at 425.148 kb on + strand, within CSW01_16695 at 425.227 kb on + strand, within CSW01_16695 at 425.330 kb on + strand, within CSW01_16695 at 425.338 kb on - strand, within CSW01_16695 at 425.340 kb on - strand, within CSW01_16695 at 425.340 kb on - strand, within CSW01_16695 at 425.362 kb on + strand, within CSW01_16695 at 425.362 kb on + strand, within CSW01_16695 at 425.396 kb on - strand, within CSW01_16695 at 425.642 kb on - strand, within CSW01_16700 at 425.969 kb on + strand, within CSW01_16705 at 425.974 kb on + strand, within CSW01_16705 at 425.986 kb on + strand, within CSW01_16705 at 426.010 kb on - strand, within CSW01_16705 at 426.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B remove 424,902 + CSW01_16695 0.34 -0.4 424,902 + CSW01_16695 0.34 -0.7 424,908 - CSW01_16695 0.35 -1.6 424,910 - CSW01_16695 0.35 +0.9 424,910 - CSW01_16695 0.35 +0.4 424,910 - CSW01_16695 0.35 -0.0 424,910 - CSW01_16695 0.35 +0.3 424,912 - CSW01_16695 0.35 -0.1 424,912 - CSW01_16695 0.35 +0.3 424,921 + CSW01_16695 0.36 +0.2 424,924 + CSW01_16695 0.36 -1.2 424,926 + CSW01_16695 0.37 +0.5 424,931 + CSW01_16695 0.37 -1.0 424,939 - CSW01_16695 0.38 +1.0 424,945 + CSW01_16695 0.39 +0.3 424,945 + CSW01_16695 0.39 -0.6 425,001 + CSW01_16695 0.45 -0.6 425,035 - CSW01_16695 0.49 +0.4 425,049 + CSW01_16695 0.50 -2.0 425,057 - CSW01_16695 0.51 +0.5 425,139 + CSW01_16695 0.60 +0.2 425,148 + CSW01_16695 0.61 -0.3 425,148 + CSW01_16695 0.61 +0.9 425,227 + CSW01_16695 0.69 +2.0 425,330 + CSW01_16695 0.81 +0.0 425,338 - CSW01_16695 0.82 +0.0 425,340 - CSW01_16695 0.82 +0.4 425,340 - CSW01_16695 0.82 +0.0 425,362 + CSW01_16695 0.84 -0.6 425,362 + CSW01_16695 0.84 +1.1 425,396 - CSW01_16695 0.88 +0.1 425,642 - CSW01_16700 0.60 +1.4 425,969 + CSW01_16705 0.78 +0.3 425,974 + CSW01_16705 0.80 -0.8 425,986 + CSW01_16705 0.83 +0.1 426,010 - CSW01_16705 0.89 -0.6 426,181 - -0.4
Or see this region's nucleotide sequence