Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16240 and CSW01_16245 are separated by 149 nucleotides CSW01_16245 and CSW01_16250 are separated by 81 nucleotides CSW01_16250 and CSW01_16255 are separated by 35 nucleotides CSW01_16255 and CSW01_16260 are separated by 201 nucleotides CSW01_16260 and CSW01_16265 overlap by 4 nucleotides CSW01_16265 and CSW01_16270 are separated by 104 nucleotides
CSW01_16240: CSW01_16240 - hypothetical protein, at 383,711 to 384,496
_16240
CSW01_16245: CSW01_16245 - hypothetical protein, at 384,646 to 384,960
_16245
CSW01_16250: CSW01_16250 - C4-dicarboxylate ABC transporter, at 385,042 to 385,170
_16250
CSW01_16255: CSW01_16255 - hypothetical protein, at 385,206 to 385,631
_16255
CSW01_16260: CSW01_16260 - prevent-host-death family protein, at 385,833 to 386,126
_16260
CSW01_16265: CSW01_16265 - type II toxin-antitoxin system RelE/ParE family toxin, at 386,123 to 386,482
_16265
CSW01_16270: CSW01_16270 - DUF3709 domain-containing protein, at 386,587 to 386,910
_16270
Position (kb) 385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 384.327 kb on + strand, within CSW01_16240 at 384.335 kb on - strand, within CSW01_16240 at 384.379 kb on + strand, within CSW01_16240 at 384.399 kb on - strand, within CSW01_16240 at 384.407 kb on + strand, within CSW01_16240 at 384.411 kb on + strand, within CSW01_16240 at 384.424 kb on - strand at 384.458 kb on - strand at 384.739 kb on - strand, within CSW01_16245 at 384.739 kb on - strand, within CSW01_16245 at 384.739 kb on - strand, within CSW01_16245 at 384.739 kb on - strand, within CSW01_16245 at 384.778 kb on + strand, within CSW01_16245 at 384.788 kb on + strand, within CSW01_16245 at 384.788 kb on + strand, within CSW01_16245 at 384.867 kb on + strand, within CSW01_16245 at 385.112 kb on + strand, within CSW01_16250 at 385.112 kb on + strand, within CSW01_16250 at 385.136 kb on - strand, within CSW01_16250 at 385.283 kb on + strand, within CSW01_16255 at 385.306 kb on - strand, within CSW01_16255 at 385.336 kb on + strand, within CSW01_16255 at 385.344 kb on - strand, within CSW01_16255 at 385.351 kb on + strand, within CSW01_16255 at 385.351 kb on + strand, within CSW01_16255 at 385.360 kb on - strand, within CSW01_16255 at 385.397 kb on - strand, within CSW01_16255 at 385.529 kb on - strand, within CSW01_16255 at 385.762 kb on + strand at 385.849 kb on + strand at 385.961 kb on + strand, within CSW01_16260 at 385.968 kb on + strand, within CSW01_16260 at 385.987 kb on + strand, within CSW01_16260 at 385.995 kb on - strand, within CSW01_16260 at 385.997 kb on + strand, within CSW01_16260 at 385.997 kb on + strand, within CSW01_16260 at 385.997 kb on + strand, within CSW01_16260 at 385.997 kb on + strand, within CSW01_16260 at 386.005 kb on - strand, within CSW01_16260 at 386.005 kb on - strand, within CSW01_16260 at 386.005 kb on - strand, within CSW01_16260 at 386.052 kb on - strand, within CSW01_16260 at 386.067 kb on + strand, within CSW01_16260 at 386.067 kb on + strand, within CSW01_16260 at 386.067 kb on + strand, within CSW01_16260 at 386.067 kb on + strand, within CSW01_16260 at 386.075 kb on - strand, within CSW01_16260 at 386.075 kb on - strand, within CSW01_16260 at 386.075 kb on - strand, within CSW01_16260 at 386.075 kb on - strand, within CSW01_16260 at 386.111 kb on - strand at 386.141 kb on + strand at 386.141 kb on + strand at 386.149 kb on - strand at 386.149 kb on - strand at 386.149 kb on - strand at 386.176 kb on + strand, within CSW01_16265 at 386.381 kb on - strand, within CSW01_16265 at 386.596 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B remove 384,327 + CSW01_16240 0.78 +0.0 384,335 - CSW01_16240 0.79 +1.1 384,379 + CSW01_16240 0.85 +1.0 384,399 - CSW01_16240 0.88 +0.4 384,407 + CSW01_16240 0.89 -1.6 384,411 + CSW01_16240 0.89 +0.7 384,424 - -0.4 384,458 - +0.1 384,739 - CSW01_16245 0.30 -0.8 384,739 - CSW01_16245 0.30 +0.2 384,739 - CSW01_16245 0.30 +0.9 384,739 - CSW01_16245 0.30 +0.5 384,778 + CSW01_16245 0.42 -0.4 384,788 + CSW01_16245 0.45 +0.6 384,788 + CSW01_16245 0.45 -0.5 384,867 + CSW01_16245 0.70 +0.1 385,112 + CSW01_16250 0.54 -0.6 385,112 + CSW01_16250 0.54 +0.8 385,136 - CSW01_16250 0.73 +0.2 385,283 + CSW01_16255 0.18 -1.5 385,306 - CSW01_16255 0.23 +0.8 385,336 + CSW01_16255 0.31 +1.6 385,344 - CSW01_16255 0.32 -0.1 385,351 + CSW01_16255 0.34 -0.7 385,351 + CSW01_16255 0.34 -0.9 385,360 - CSW01_16255 0.36 -0.1 385,397 - CSW01_16255 0.45 -0.4 385,529 - CSW01_16255 0.76 -0.6 385,762 + -0.9 385,849 + +1.3 385,961 + CSW01_16260 0.44 -0.4 385,968 + CSW01_16260 0.46 -0.8 385,987 + CSW01_16260 0.52 +0.8 385,995 - CSW01_16260 0.55 +0.2 385,997 + CSW01_16260 0.56 +0.3 385,997 + CSW01_16260 0.56 -0.5 385,997 + CSW01_16260 0.56 -0.1 385,997 + CSW01_16260 0.56 -0.4 386,005 - CSW01_16260 0.59 -0.9 386,005 - CSW01_16260 0.59 -1.9 386,005 - CSW01_16260 0.59 -0.2 386,052 - CSW01_16260 0.74 -0.5 386,067 + CSW01_16260 0.80 -0.8 386,067 + CSW01_16260 0.80 -0.6 386,067 + CSW01_16260 0.80 -0.3 386,067 + CSW01_16260 0.80 +0.3 386,075 - CSW01_16260 0.82 +1.2 386,075 - CSW01_16260 0.82 +0.1 386,075 - CSW01_16260 0.82 +0.6 386,075 - CSW01_16260 0.82 -1.3 386,111 - +0.8 386,141 + +0.3 386,141 + -0.2 386,149 - -0.4 386,149 - +1.1 386,149 - -0.5 386,176 + CSW01_16265 0.15 +0.3 386,381 - CSW01_16265 0.72 -3.5 386,596 + -0.9
Or see this region's nucleotide sequence