Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15420 and CSW01_15425 overlap by 14 nucleotides CSW01_15425 and CSW01_15430 are separated by 111 nucleotides CSW01_15430 and CSW01_15435 are separated by 201 nucleotides CSW01_15435 and CSW01_15440 are separated by 60 nucleotides CSW01_15440 and CSW01_15445 are separated by 255 nucleotides CSW01_15445 and CSW01_15450 overlap by 28 nucleotides CSW01_15450 and CSW01_15455 are separated by 18 nucleotides
CSW01_15420: CSW01_15420 - glyoxalase, at 310,896 to 311,270
_15420
CSW01_15425: CSW01_15425 - DUF3265 domain-containing protein, at 311,257 to 311,403
_15425
CSW01_15430: CSW01_15430 - hypothetical protein, at 311,515 to 311,703
_15430
CSW01_15435: CSW01_15435 - general secretion pathway protein GspI, at 311,905 to 312,006
_15435
CSW01_15440: CSW01_15440 - DUF645 domain-containing protein, at 312,067 to 312,249
_15440
CSW01_15445: CSW01_15445 - TIGR03643 family protein, at 312,505 to 312,756
_15445
CSW01_15450: CSW01_15450 - DUF3265 domain-containing protein, at 312,729 to 312,878
_15450
CSW01_15455: CSW01_15455 - hypothetical protein, at 312,897 to 313,340
_15455
Position (kb) 312
313 Strain fitness (log2 ratio) -2
-1
0
1
2 at 311.098 kb on - strand, within CSW01_15420 at 311.118 kb on + strand, within CSW01_15420 at 311.246 kb on + strand at 311.246 kb on + strand at 311.355 kb on + strand, within CSW01_15425 at 311.381 kb on + strand, within CSW01_15425 at 311.396 kb on + strand at 311.396 kb on + strand at 311.396 kb on + strand at 311.404 kb on - strand at 311.406 kb on + strand at 311.456 kb on - strand at 311.461 kb on - strand at 311.551 kb on - strand, within CSW01_15430 at 311.557 kb on + strand, within CSW01_15430 at 311.596 kb on - strand, within CSW01_15430 at 311.689 kb on - strand at 311.689 kb on - strand at 311.793 kb on - strand at 311.844 kb on + strand at 311.876 kb on + strand at 312.871 kb on + strand at 312.871 kb on + strand at 312.871 kb on + strand at 312.871 kb on + strand at 312.992 kb on + strand, within CSW01_15455 at 312.992 kb on + strand, within CSW01_15455 at 313.140 kb on - strand, within CSW01_15455 at 313.145 kb on - strand, within CSW01_15455 at 313.145 kb on - strand, within CSW01_15455 at 313.176 kb on + strand, within CSW01_15455 at 313.201 kb on - strand, within CSW01_15455 at 313.212 kb on - strand, within CSW01_15455 at 313.249 kb on + strand, within CSW01_15455
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B remove 311,098 - CSW01_15420 0.54 +0.5 311,118 + CSW01_15420 0.59 -0.3 311,246 + +0.5 311,246 + -0.5 311,355 + CSW01_15425 0.67 +0.6 311,381 + CSW01_15425 0.84 +0.7 311,396 + +0.4 311,396 + +0.4 311,396 + -0.6 311,404 - -0.0 311,406 + +0.1 311,456 - +0.4 311,461 - -0.1 311,551 - CSW01_15430 0.19 -0.2 311,557 + CSW01_15430 0.22 +1.1 311,596 - CSW01_15430 0.43 -0.2 311,689 - +1.3 311,689 - -0.1 311,793 - +0.6 311,844 + +0.0 311,876 + -0.3 312,871 + +0.7 312,871 + +0.7 312,871 + +0.4 312,871 + +1.8 312,992 + CSW01_15455 0.21 +0.1 312,992 + CSW01_15455 0.21 +0.6 313,140 - CSW01_15455 0.55 -0.7 313,145 - CSW01_15455 0.56 +0.2 313,145 - CSW01_15455 0.56 +0.8 313,176 + CSW01_15455 0.63 +0.3 313,201 - CSW01_15455 0.68 -2.7 313,212 - CSW01_15455 0.71 +1.2 313,249 + CSW01_15455 0.79 -0.4
Or see this region's nucleotide sequence