Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15185

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15175 and CSW01_15180 are separated by 11 nucleotidesCSW01_15180 and CSW01_15185 are separated by 5 nucleotidesCSW01_15185 and CSW01_15190 are separated by 5 nucleotidesCSW01_15190 and CSW01_15195 are separated by 8 nucleotides CSW01_15175: CSW01_15175 - xylulose 5-phosphate 3-epimerase, at 261,634 to 262,518 _15175 CSW01_15180: CSW01_15180 - 3-keto-L-gulonate-6-phosphate decarboxylase, at 262,530 to 263,177 _15180 CSW01_15185: CSW01_15185 - Cof-type HAD-IIB family hydrolase, at 263,183 to 264,004 _15185 CSW01_15190: CSW01_15190 - L-ribulose-5-phosphate 4-epimerase, at 264,010 to 264,702 _15190 CSW01_15195: CSW01_15195 - PTS ascorbate-specific transporter subunit IIA, at 264,711 to 265,217 _15195 Position (kb) 263 264 265Strain fitness (log2 ratio) -2 -1 0 1 2at 262.210 kb on - strand, within CSW01_15175at 262.280 kb on + strand, within CSW01_15175at 262.310 kb on + strand, within CSW01_15175at 262.337 kb on + strand, within CSW01_15175at 262.425 kb on + strand, within CSW01_15175at 262.433 kb on - strandat 262.566 kb on - strandat 262.641 kb on - strand, within CSW01_15180at 262.682 kb on + strand, within CSW01_15180at 262.682 kb on + strand, within CSW01_15180at 262.690 kb on - strand, within CSW01_15180at 263.213 kb on + strandat 263.226 kb on - strandat 263.242 kb on + strandat 263.250 kb on - strandat 263.280 kb on + strand, within CSW01_15185at 263.288 kb on - strand, within CSW01_15185at 263.307 kb on + strand, within CSW01_15185at 263.317 kb on + strand, within CSW01_15185at 263.319 kb on + strand, within CSW01_15185at 263.387 kb on + strand, within CSW01_15185at 263.404 kb on + strand, within CSW01_15185at 263.406 kb on + strand, within CSW01_15185at 263.407 kb on - strand, within CSW01_15185at 263.412 kb on - strand, within CSW01_15185at 263.460 kb on + strand, within CSW01_15185at 263.460 kb on + strand, within CSW01_15185at 263.503 kb on + strand, within CSW01_15185at 263.508 kb on - strand, within CSW01_15185at 263.656 kb on - strand, within CSW01_15185at 263.792 kb on + strand, within CSW01_15185at 263.792 kb on + strand, within CSW01_15185at 263.792 kb on + strand, within CSW01_15185at 263.800 kb on - strand, within CSW01_15185at 263.850 kb on + strand, within CSW01_15185at 263.850 kb on + strand, within CSW01_15185at 263.868 kb on + strand, within CSW01_15185at 263.873 kb on - strand, within CSW01_15185at 263.893 kb on + strand, within CSW01_15185at 263.896 kb on + strand, within CSW01_15185at 263.906 kb on - strand, within CSW01_15185at 263.914 kb on - strand, within CSW01_15185at 263.914 kb on - strand, within CSW01_15185at 263.968 kb on - strandat 263.973 kb on - strandat 263.980 kb on + strandat 264.021 kb on - strandat 264.051 kb on + strandat 264.146 kb on + strand, within CSW01_15190at 264.154 kb on - strand, within CSW01_15190at 264.208 kb on - strand, within CSW01_15190at 264.362 kb on - strand, within CSW01_15190at 264.362 kb on - strand, within CSW01_15190at 264.418 kb on + strand, within CSW01_15190at 264.418 kb on + strand, within CSW01_15190at 264.426 kb on - strand, within CSW01_15190at 264.426 kb on - strand, within CSW01_15190at 264.426 kb on - strand, within CSW01_15190at 264.426 kb on - strand, within CSW01_15190at 264.447 kb on - strand, within CSW01_15190at 264.454 kb on + strand, within CSW01_15190at 264.467 kb on - strand, within CSW01_15190at 264.540 kb on - strand, within CSW01_15190at 264.627 kb on + strand, within CSW01_15190at 264.637 kb on - strandat 264.692 kb on - strandat 264.699 kb on + strandat 264.706 kb on - strandat 264.716 kb on - strandat 264.816 kb on - strand, within CSW01_15195at 264.821 kb on - strand, within CSW01_15195at 264.846 kb on + strand, within CSW01_15195at 264.967 kb on - strand, within CSW01_15195

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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262,210 - CSW01_15175 0.65 -0.7
262,280 + CSW01_15175 0.73 +0.2
262,310 + CSW01_15175 0.76 +1.2
262,337 + CSW01_15175 0.79 +0.4
262,425 + CSW01_15175 0.89 +0.8
262,433 - -1.1
262,566 - -0.3
262,641 - CSW01_15180 0.17 -1.7
262,682 + CSW01_15180 0.23 -0.7
262,682 + CSW01_15180 0.23 +2.0
262,690 - CSW01_15180 0.25 -1.7
263,213 + -0.3
263,226 - +0.2
263,242 + -0.9
263,250 - -0.6
263,280 + CSW01_15185 0.12 -1.9
263,288 - CSW01_15185 0.13 -0.7
263,307 + CSW01_15185 0.15 +0.2
263,317 + CSW01_15185 0.16 +0.5
263,319 + CSW01_15185 0.17 -1.2
263,387 + CSW01_15185 0.25 +0.1
263,404 + CSW01_15185 0.27 -0.9
263,406 + CSW01_15185 0.27 -0.7
263,407 - CSW01_15185 0.27 +0.3
263,412 - CSW01_15185 0.28 +1.3
263,460 + CSW01_15185 0.34 -0.4
263,460 + CSW01_15185 0.34 -1.3
263,503 + CSW01_15185 0.39 -1.1
263,508 - CSW01_15185 0.40 +0.1
263,656 - CSW01_15185 0.58 -1.4
263,792 + CSW01_15185 0.74 -0.3
263,792 + CSW01_15185 0.74 +0.4
263,792 + CSW01_15185 0.74 +0.3
263,800 - CSW01_15185 0.75 +0.2
263,850 + CSW01_15185 0.81 +0.0
263,850 + CSW01_15185 0.81 +0.1
263,868 + CSW01_15185 0.83 -0.9
263,873 - CSW01_15185 0.84 +0.2
263,893 + CSW01_15185 0.86 -0.4
263,896 + CSW01_15185 0.87 +0.1
263,906 - CSW01_15185 0.88 +0.9
263,914 - CSW01_15185 0.89 +0.2
263,914 - CSW01_15185 0.89 +0.4
263,968 - -0.2
263,973 - +0.4
263,980 + +0.4
264,021 - +0.6
264,051 + +0.2
264,146 + CSW01_15190 0.20 +1.7
264,154 - CSW01_15190 0.21 -0.4
264,208 - CSW01_15190 0.29 +0.1
264,362 - CSW01_15190 0.51 +0.4
264,362 - CSW01_15190 0.51 -0.1
264,418 + CSW01_15190 0.59 +0.1
264,418 + CSW01_15190 0.59 +1.9
264,426 - CSW01_15190 0.60 +0.3
264,426 - CSW01_15190 0.60 -2.0
264,426 - CSW01_15190 0.60 +0.0
264,426 - CSW01_15190 0.60 +1.3
264,447 - CSW01_15190 0.63 -0.5
264,454 + CSW01_15190 0.64 -0.5
264,467 - CSW01_15190 0.66 +0.3
264,540 - CSW01_15190 0.76 +0.7
264,627 + CSW01_15190 0.89 -0.0
264,637 - -0.4
264,692 - +0.6
264,699 + -0.3
264,706 - +0.0
264,716 - +0.0
264,816 - CSW01_15195 0.21 +1.5
264,821 - CSW01_15195 0.22 -0.2
264,846 + CSW01_15195 0.27 +0.4
264,967 - CSW01_15195 0.50 +0.4

Or see this region's nucleotide sequence