Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15170 and CSW01_15175 overlap by 41 nucleotides CSW01_15175 and CSW01_15180 are separated by 11 nucleotides CSW01_15180 and CSW01_15185 are separated by 5 nucleotides CSW01_15185 and CSW01_15190 are separated by 5 nucleotides
CSW01_15170: CSW01_15170 - hypothetical protein, at 261,045 to 261,674
_15170
CSW01_15175: CSW01_15175 - xylulose 5-phosphate 3-epimerase, at 261,634 to 262,518
_15175
CSW01_15180: CSW01_15180 - 3-keto-L-gulonate-6-phosphate decarboxylase, at 262,530 to 263,177
_15180
CSW01_15185: CSW01_15185 - Cof-type HAD-IIB family hydrolase, at 263,183 to 264,004
_15185
CSW01_15190: CSW01_15190 - L-ribulose-5-phosphate 4-epimerase, at 264,010 to 264,702
_15190
Position (kb)
262
263
264 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 261.624 kb on + strand at 261.624 kb on + strand at 261.624 kb on + strand at 261.632 kb on - strand at 261.632 kb on - strand at 261.632 kb on - strand at 261.703 kb on + strand at 261.709 kb on - strand at 261.709 kb on - strand at 261.747 kb on - strand, within CSW01_15175 at 261.761 kb on + strand, within CSW01_15175 at 261.764 kb on - strand, within CSW01_15175 at 261.769 kb on - strand, within CSW01_15175 at 261.784 kb on + strand, within CSW01_15175 at 261.861 kb on + strand, within CSW01_15175 at 261.869 kb on - strand, within CSW01_15175 at 261.869 kb on - strand, within CSW01_15175 at 261.891 kb on - strand, within CSW01_15175 at 261.965 kb on - strand, within CSW01_15175 at 262.013 kb on - strand, within CSW01_15175 at 262.013 kb on - strand, within CSW01_15175 at 262.029 kb on + strand, within CSW01_15175 at 262.037 kb on - strand, within CSW01_15175 at 262.060 kb on + strand, within CSW01_15175 at 262.093 kb on + strand, within CSW01_15175 at 262.210 kb on - strand, within CSW01_15175 at 262.280 kb on + strand, within CSW01_15175 at 262.310 kb on + strand, within CSW01_15175 at 262.337 kb on + strand, within CSW01_15175 at 262.425 kb on + strand, within CSW01_15175 at 262.433 kb on - strand at 262.566 kb on - strand at 262.641 kb on - strand, within CSW01_15180 at 262.682 kb on + strand, within CSW01_15180 at 262.682 kb on + strand, within CSW01_15180 at 262.690 kb on - strand, within CSW01_15180 at 263.213 kb on + strand at 263.226 kb on - strand at 263.242 kb on + strand at 263.250 kb on - strand at 263.280 kb on + strand, within CSW01_15185 at 263.288 kb on - strand, within CSW01_15185 at 263.307 kb on + strand, within CSW01_15185 at 263.317 kb on + strand, within CSW01_15185 at 263.319 kb on + strand, within CSW01_15185 at 263.387 kb on + strand, within CSW01_15185 at 263.404 kb on + strand, within CSW01_15185 at 263.406 kb on + strand, within CSW01_15185 at 263.407 kb on - strand, within CSW01_15185 at 263.412 kb on - strand, within CSW01_15185 at 263.460 kb on + strand, within CSW01_15185 at 263.460 kb on + strand, within CSW01_15185 at 263.503 kb on + strand, within CSW01_15185 at 263.508 kb on - strand, within CSW01_15185 at 263.656 kb on - strand, within CSW01_15185 at 263.792 kb on + strand, within CSW01_15185 at 263.792 kb on + strand, within CSW01_15185 at 263.792 kb on + strand, within CSW01_15185 at 263.800 kb on - strand, within CSW01_15185 at 263.850 kb on + strand, within CSW01_15185 at 263.850 kb on + strand, within CSW01_15185 at 263.868 kb on + strand, within CSW01_15185 at 263.873 kb on - strand, within CSW01_15185 at 263.893 kb on + strand, within CSW01_15185 at 263.896 kb on + strand, within CSW01_15185 at 263.906 kb on - strand, within CSW01_15185 at 263.914 kb on - strand, within CSW01_15185 at 263.914 kb on - strand, within CSW01_15185 at 263.968 kb on - strand at 263.973 kb on - strand at 263.980 kb on + strand at 264.021 kb on - strand at 264.051 kb on + strand at 264.146 kb on + strand, within CSW01_15190 at 264.154 kb on - strand, within CSW01_15190
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B remove 261,624 + -0.2 261,624 + -0.6 261,624 + -0.0 261,632 - -0.7 261,632 - -0.7 261,632 - -0.9 261,703 + -0.6 261,709 - +0.2 261,709 - -0.2 261,747 - CSW01_15175 0.13 +1.0 261,761 + CSW01_15175 0.14 +0.9 261,764 - CSW01_15175 0.15 +1.7 261,769 - CSW01_15175 0.15 -0.4 261,784 + CSW01_15175 0.17 +3.2 261,861 + CSW01_15175 0.26 +0.4 261,869 - CSW01_15175 0.27 -1.8 261,869 - CSW01_15175 0.27 +1.1 261,891 - CSW01_15175 0.29 +1.7 261,965 - CSW01_15175 0.37 +0.4 262,013 - CSW01_15175 0.43 -1.5 262,013 - CSW01_15175 0.43 -1.1 262,029 + CSW01_15175 0.45 -0.8 262,037 - CSW01_15175 0.46 -0.8 262,060 + CSW01_15175 0.48 +0.1 262,093 + CSW01_15175 0.52 -0.2 262,210 - CSW01_15175 0.65 -0.7 262,280 + CSW01_15175 0.73 +0.2 262,310 + CSW01_15175 0.76 +1.2 262,337 + CSW01_15175 0.79 +0.4 262,425 + CSW01_15175 0.89 +0.8 262,433 - -1.1 262,566 - -0.3 262,641 - CSW01_15180 0.17 -1.7 262,682 + CSW01_15180 0.23 -0.7 262,682 + CSW01_15180 0.23 +2.0 262,690 - CSW01_15180 0.25 -1.7 263,213 + -0.3 263,226 - +0.2 263,242 + -0.9 263,250 - -0.6 263,280 + CSW01_15185 0.12 -1.9 263,288 - CSW01_15185 0.13 -0.7 263,307 + CSW01_15185 0.15 +0.2 263,317 + CSW01_15185 0.16 +0.5 263,319 + CSW01_15185 0.17 -1.2 263,387 + CSW01_15185 0.25 +0.1 263,404 + CSW01_15185 0.27 -0.9 263,406 + CSW01_15185 0.27 -0.7 263,407 - CSW01_15185 0.27 +0.3 263,412 - CSW01_15185 0.28 +1.3 263,460 + CSW01_15185 0.34 -0.4 263,460 + CSW01_15185 0.34 -1.3 263,503 + CSW01_15185 0.39 -1.1 263,508 - CSW01_15185 0.40 +0.1 263,656 - CSW01_15185 0.58 -1.4 263,792 + CSW01_15185 0.74 -0.3 263,792 + CSW01_15185 0.74 +0.4 263,792 + CSW01_15185 0.74 +0.3 263,800 - CSW01_15185 0.75 +0.2 263,850 + CSW01_15185 0.81 +0.0 263,850 + CSW01_15185 0.81 +0.1 263,868 + CSW01_15185 0.83 -0.9 263,873 - CSW01_15185 0.84 +0.2 263,893 + CSW01_15185 0.86 -0.4 263,896 + CSW01_15185 0.87 +0.1 263,906 - CSW01_15185 0.88 +0.9 263,914 - CSW01_15185 0.89 +0.2 263,914 - CSW01_15185 0.89 +0.4 263,968 - -0.2 263,973 - +0.4 263,980 + +0.4 264,021 - +0.6 264,051 + +0.2 264,146 + CSW01_15190 0.20 +1.7 264,154 - CSW01_15190 0.21 -0.4
Or see this region's nucleotide sequence