Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14975

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14970 and CSW01_14975 are separated by 323 nucleotidesCSW01_14975 and CSW01_14980 are separated by 123 nucleotides CSW01_14970: CSW01_14970 - guanosine monophosphate reductase, at 213,202 to 214,245 _14970 CSW01_14975: CSW01_14975 - DNA cytosine methyltransferase, at 214,569 to 215,720 _14975 CSW01_14980: CSW01_14980 - DUF262 domain-containing protein, at 215,844 to 217,760 _14980 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 213.597 kb on + strand, within CSW01_14970at 213.610 kb on - strand, within CSW01_14970at 213.675 kb on + strand, within CSW01_14970at 213.683 kb on - strand, within CSW01_14970at 213.701 kb on + strand, within CSW01_14970at 213.715 kb on + strand, within CSW01_14970at 213.756 kb on + strand, within CSW01_14970at 213.756 kb on - strand, within CSW01_14970at 213.788 kb on + strand, within CSW01_14970at 213.791 kb on - strand, within CSW01_14970at 213.805 kb on + strand, within CSW01_14970at 213.815 kb on - strand, within CSW01_14970at 213.833 kb on + strand, within CSW01_14970at 213.841 kb on - strand, within CSW01_14970at 213.900 kb on - strand, within CSW01_14970at 213.987 kb on - strand, within CSW01_14970at 214.104 kb on + strand, within CSW01_14970at 214.122 kb on - strand, within CSW01_14970at 214.152 kb on - strandat 214.346 kb on + strandat 214.556 kb on - strandat 215.437 kb on - strand, within CSW01_14975at 215.749 kb on + strandat 215.760 kb on - strandat 215.762 kb on - strandat 215.774 kb on + strandat 215.777 kb on + strandat 215.866 kb on - strandat 215.867 kb on - strandat 215.869 kb on + strandat 215.869 kb on + strandat 215.869 kb on + strandat 215.869 kb on + strandat 215.933 kb on + strandat 215.933 kb on + strandat 215.940 kb on - strandat 215.970 kb on + strandat 216.042 kb on - strand, within CSW01_14980at 216.056 kb on - strand, within CSW01_14980at 216.058 kb on + strand, within CSW01_14980at 216.058 kb on + strand, within CSW01_14980at 216.069 kb on + strand, within CSW01_14980at 216.071 kb on - strand, within CSW01_14980at 216.080 kb on - strand, within CSW01_14980at 216.082 kb on - strand, within CSW01_14980at 216.084 kb on + strand, within CSW01_14980at 216.084 kb on + strand, within CSW01_14980at 216.092 kb on - strand, within CSW01_14980at 216.125 kb on + strand, within CSW01_14980at 216.130 kb on - strand, within CSW01_14980at 216.130 kb on - strand, within CSW01_14980at 216.138 kb on - strand, within CSW01_14980at 216.202 kb on - strand, within CSW01_14980at 216.211 kb on + strand, within CSW01_14980at 216.383 kb on - strand, within CSW01_14980at 216.383 kb on - strand, within CSW01_14980at 216.436 kb on + strand, within CSW01_14980at 216.436 kb on + strand, within CSW01_14980at 216.436 kb on + strand, within CSW01_14980at 216.480 kb on - strand, within CSW01_14980at 216.493 kb on + strand, within CSW01_14980at 216.500 kb on - strand, within CSW01_14980at 216.502 kb on - strand, within CSW01_14980at 216.523 kb on + strand, within CSW01_14980at 216.531 kb on - strand, within CSW01_14980at 216.571 kb on + strand, within CSW01_14980at 216.571 kb on + strand, within CSW01_14980at 216.571 kb on + strand, within CSW01_14980at 216.571 kb on + strand, within CSW01_14980at 216.571 kb on + strand, within CSW01_14980at 216.579 kb on - strand, within CSW01_14980at 216.591 kb on + strand, within CSW01_14980at 216.591 kb on + strand, within CSW01_14980at 216.591 kb on + strand, within CSW01_14980at 216.596 kb on + strand, within CSW01_14980at 216.604 kb on - strand, within CSW01_14980at 216.604 kb on - strand, within CSW01_14980at 216.609 kb on - strand, within CSW01_14980at 216.615 kb on + strand, within CSW01_14980at 216.618 kb on + strand, within CSW01_14980at 216.623 kb on - strand, within CSW01_14980at 216.623 kb on - strand, within CSW01_14980at 216.625 kb on + strand, within CSW01_14980at 216.630 kb on + strand, within CSW01_14980at 216.638 kb on - strand, within CSW01_14980at 216.657 kb on + strand, within CSW01_14980at 216.704 kb on - strand, within CSW01_14980

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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213,597 + CSW01_14970 0.38 -0.1
213,610 - CSW01_14970 0.39 +0.2
213,675 + CSW01_14970 0.45 -0.1
213,683 - CSW01_14970 0.46 -0.6
213,701 + CSW01_14970 0.48 +0.0
213,715 + CSW01_14970 0.49 -0.0
213,756 + CSW01_14970 0.53 -1.5
213,756 - CSW01_14970 0.53 -0.5
213,788 + CSW01_14970 0.56 +0.1
213,791 - CSW01_14970 0.56 +1.2
213,805 + CSW01_14970 0.58 +0.1
213,815 - CSW01_14970 0.59 -0.0
213,833 + CSW01_14970 0.60 +0.3
213,841 - CSW01_14970 0.61 -0.3
213,900 - CSW01_14970 0.67 +0.3
213,987 - CSW01_14970 0.75 +0.0
214,104 + CSW01_14970 0.86 +1.0
214,122 - CSW01_14970 0.88 -0.2
214,152 - -0.1
214,346 + +0.4
214,556 - +0.2
215,437 - CSW01_14975 0.75 -2.5
215,749 + +0.2
215,760 - -0.7
215,762 - +0.3
215,774 + +0.5
215,777 + +0.2
215,866 - -0.2
215,867 - +0.2
215,869 + -0.8
215,869 + -0.1
215,869 + +0.7
215,869 + -0.3
215,933 + -0.1
215,933 + -0.0
215,940 - -0.4
215,970 + -1.7
216,042 - CSW01_14980 0.10 +0.3
216,056 - CSW01_14980 0.11 -0.2
216,058 + CSW01_14980 0.11 +0.3
216,058 + CSW01_14980 0.11 -0.3
216,069 + CSW01_14980 0.12 +0.2
216,071 - CSW01_14980 0.12 +1.0
216,080 - CSW01_14980 0.12 -0.5
216,082 - CSW01_14980 0.12 -0.2
216,084 + CSW01_14980 0.13 +0.1
216,084 + CSW01_14980 0.13 -0.9
216,092 - CSW01_14980 0.13 -1.2
216,125 + CSW01_14980 0.15 +0.1
216,130 - CSW01_14980 0.15 +0.5
216,130 - CSW01_14980 0.15 -0.0
216,138 - CSW01_14980 0.15 -1.2
216,202 - CSW01_14980 0.19 -0.4
216,211 + CSW01_14980 0.19 +1.4
216,383 - CSW01_14980 0.28 -0.8
216,383 - CSW01_14980 0.28 -0.2
216,436 + CSW01_14980 0.31 -0.7
216,436 + CSW01_14980 0.31 +0.9
216,436 + CSW01_14980 0.31 -0.5
216,480 - CSW01_14980 0.33 +0.1
216,493 + CSW01_14980 0.34 -0.9
216,500 - CSW01_14980 0.34 +1.5
216,502 - CSW01_14980 0.34 -0.4
216,523 + CSW01_14980 0.35 -0.0
216,531 - CSW01_14980 0.36 +0.4
216,571 + CSW01_14980 0.38 +1.4
216,571 + CSW01_14980 0.38 +0.5
216,571 + CSW01_14980 0.38 -0.9
216,571 + CSW01_14980 0.38 +0.2
216,571 + CSW01_14980 0.38 +0.9
216,579 - CSW01_14980 0.38 -0.2
216,591 + CSW01_14980 0.39 +0.3
216,591 + CSW01_14980 0.39 -0.6
216,591 + CSW01_14980 0.39 -1.1
216,596 + CSW01_14980 0.39 -0.1
216,604 - CSW01_14980 0.40 -0.3
216,604 - CSW01_14980 0.40 +2.4
216,609 - CSW01_14980 0.40 -0.9
216,615 + CSW01_14980 0.40 +0.1
216,618 + CSW01_14980 0.40 -0.2
216,623 - CSW01_14980 0.41 +1.1
216,623 - CSW01_14980 0.41 -1.2
216,625 + CSW01_14980 0.41 -0.5
216,630 + CSW01_14980 0.41 -0.2
216,638 - CSW01_14980 0.41 +0.3
216,657 + CSW01_14980 0.42 +1.0
216,704 - CSW01_14980 0.45 -0.6

Or see this region's nucleotide sequence