Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14755

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14745 and CSW01_14750 are separated by 147 nucleotidesCSW01_14750 and CSW01_14755 are separated by 128 nucleotidesCSW01_14755 and CSW01_14760 are separated by 74 nucleotidesCSW01_14760 and CSW01_14765 overlap by 1 nucleotidesCSW01_14765 and CSW01_14770 overlap by 41 nucleotides CSW01_14745: CSW01_14745 - peptidase M66, at 164,093 to 167,836 _14745 CSW01_14750: CSW01_14750 - peptide deformylase, at 167,984 to 168,490 _14750 CSW01_14755: CSW01_14755 - oxidoreductase, at 168,619 to 169,971 _14755 CSW01_14760: CSW01_14760 - Na+/H+ antiporter subunit G, at 170,046 to 170,369 _14760 CSW01_14765: CSW01_14765 - cation:proton antiporter, at 170,369 to 170,680 _14765 CSW01_14770: CSW01_14770 - sodium:proton antiporter, at 170,640 to 171,116 _14770 Position (kb) 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 167.630 kb on - strandat 167.638 kb on + strandat 167.674 kb on + strandat 167.679 kb on + strandat 167.679 kb on + strandat 167.679 kb on + strandat 167.679 kb on + strandat 167.687 kb on - strandat 167.687 kb on - strandat 167.687 kb on - strandat 167.697 kb on - strandat 167.730 kb on - strandat 167.812 kb on - strandat 167.921 kb on - strandat 167.946 kb on - strandat 167.946 kb on - strandat 167.980 kb on + strandat 168.015 kb on + strandat 168.043 kb on + strand, within CSW01_14750at 168.051 kb on - strand, within CSW01_14750at 168.051 kb on - strand, within CSW01_14750at 168.058 kb on - strand, within CSW01_14750at 168.062 kb on + strand, within CSW01_14750at 168.077 kb on - strand, within CSW01_14750at 168.085 kb on + strand, within CSW01_14750at 168.085 kb on + strand, within CSW01_14750at 168.085 kb on + strand, within CSW01_14750at 168.093 kb on - strand, within CSW01_14750at 168.093 kb on - strand, within CSW01_14750at 168.097 kb on + strand, within CSW01_14750at 168.188 kb on - strand, within CSW01_14750at 168.197 kb on + strand, within CSW01_14750at 168.281 kb on + strand, within CSW01_14750at 168.289 kb on + strand, within CSW01_14750at 168.289 kb on + strand, within CSW01_14750at 168.289 kb on + strand, within CSW01_14750at 168.289 kb on - strand, within CSW01_14750at 168.297 kb on - strand, within CSW01_14750at 168.297 kb on - strand, within CSW01_14750at 168.328 kb on + strand, within CSW01_14750at 168.328 kb on + strand, within CSW01_14750at 168.336 kb on - strand, within CSW01_14750at 168.336 kb on - strand, within CSW01_14750at 168.489 kb on + strandat 168.647 kb on + strandat 168.647 kb on + strandat 168.655 kb on - strandat 168.673 kb on - strandat 168.673 kb on - strandat 168.690 kb on + strandat 168.698 kb on - strandat 168.698 kb on - strandat 168.704 kb on - strandat 168.710 kb on - strandat 168.725 kb on - strandat 168.778 kb on - strand, within CSW01_14755at 168.813 kb on - strand, within CSW01_14755at 168.816 kb on + strand, within CSW01_14755at 168.827 kb on + strand, within CSW01_14755at 168.860 kb on - strand, within CSW01_14755at 168.959 kb on - strand, within CSW01_14755at 169.049 kb on - strand, within CSW01_14755at 169.185 kb on - strand, within CSW01_14755at 169.185 kb on - strand, within CSW01_14755at 169.195 kb on - strand, within CSW01_14755at 169.247 kb on + strand, within CSW01_14755at 169.260 kb on + strand, within CSW01_14755at 169.268 kb on - strand, within CSW01_14755at 169.366 kb on - strand, within CSW01_14755at 169.386 kb on + strand, within CSW01_14755at 169.386 kb on + strand, within CSW01_14755at 169.386 kb on + strand, within CSW01_14755at 169.394 kb on - strand, within CSW01_14755at 169.394 kb on - strand, within CSW01_14755at 169.394 kb on - strand, within CSW01_14755at 169.404 kb on - strand, within CSW01_14755at 169.411 kb on - strand, within CSW01_14755at 169.479 kb on - strand, within CSW01_14755at 169.534 kb on - strand, within CSW01_14755at 169.572 kb on - strand, within CSW01_14755at 169.843 kb on + strandat 169.931 kb on + strandat 169.974 kb on - strandat 169.984 kb on + strandat 169.992 kb on - strandat 169.992 kb on - strandat 169.994 kb on + strandat 170.017 kb on - strandat 170.116 kb on + strand, within CSW01_14760at 170.116 kb on + strand, within CSW01_14760at 170.116 kb on + strand, within CSW01_14760at 170.165 kb on + strand, within CSW01_14760at 170.170 kb on + strand, within CSW01_14760at 170.178 kb on - strand, within CSW01_14760at 170.203 kb on + strand, within CSW01_14760at 170.203 kb on + strand, within CSW01_14760at 170.221 kb on + strand, within CSW01_14760at 170.226 kb on + strand, within CSW01_14760at 170.435 kb on + strand, within CSW01_14765at 170.435 kb on + strand, within CSW01_14765at 170.435 kb on + strand, within CSW01_14765at 170.441 kb on + strand, within CSW01_14765at 170.443 kb on - strand, within CSW01_14765at 170.443 kb on - strand, within CSW01_14765at 170.449 kb on - strand, within CSW01_14765at 170.558 kb on + strand, within CSW01_14765at 170.558 kb on + strand, within CSW01_14765at 170.558 kb on + strand, within CSW01_14765at 170.558 kb on + strand, within CSW01_14765at 170.566 kb on - strand, within CSW01_14765at 170.566 kb on - strand, within CSW01_14765at 170.566 kb on - strand, within CSW01_14765at 170.566 kb on - strand, within CSW01_14765at 170.581 kb on - strand, within CSW01_14765at 170.640 kb on - strandat 170.713 kb on + strand, within CSW01_14770at 170.713 kb on + strand, within CSW01_14770at 170.723 kb on - strand, within CSW01_14770at 170.807 kb on - strand, within CSW01_14770at 170.859 kb on - strand, within CSW01_14770at 170.870 kb on + strand, within CSW01_14770at 170.898 kb on - strand, within CSW01_14770

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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167,630 - -0.9
167,638 + +0.7
167,674 + -0.3
167,679 + +0.6
167,679 + -1.7
167,679 + -0.1
167,679 + -0.1
167,687 - -0.1
167,687 - -0.2
167,687 - +2.2
167,697 - +1.0
167,730 - +0.5
167,812 - +0.2
167,921 - -0.3
167,946 - +0.6
167,946 - -1.5
167,980 + +1.3
168,015 + +1.5
168,043 + CSW01_14750 0.12 +0.7
168,051 - CSW01_14750 0.13 -1.9
168,051 - CSW01_14750 0.13 -0.2
168,058 - CSW01_14750 0.15 -0.2
168,062 + CSW01_14750 0.15 -0.0
168,077 - CSW01_14750 0.18 +0.2
168,085 + CSW01_14750 0.20 +1.2
168,085 + CSW01_14750 0.20 -0.4
168,085 + CSW01_14750 0.20 -0.8
168,093 - CSW01_14750 0.21 -0.0
168,093 - CSW01_14750 0.21 -0.2
168,097 + CSW01_14750 0.22 -0.6
168,188 - CSW01_14750 0.40 -0.8
168,197 + CSW01_14750 0.42 -0.7
168,281 + CSW01_14750 0.59 +0.2
168,289 + CSW01_14750 0.60 -0.2
168,289 + CSW01_14750 0.60 +0.2
168,289 + CSW01_14750 0.60 +0.0
168,289 - CSW01_14750 0.60 -0.2
168,297 - CSW01_14750 0.62 +0.7
168,297 - CSW01_14750 0.62 +1.7
168,328 + CSW01_14750 0.68 +0.2
168,328 + CSW01_14750 0.68 +0.3
168,336 - CSW01_14750 0.69 -0.3
168,336 - CSW01_14750 0.69 +0.1
168,489 + -0.8
168,647 + -0.7
168,647 + +0.9
168,655 - +0.7
168,673 - +0.3
168,673 - -0.1
168,690 + -0.5
168,698 - -0.3
168,698 - +0.2
168,704 - -0.4
168,710 - +0.5
168,725 - -0.4
168,778 - CSW01_14755 0.12 -0.3
168,813 - CSW01_14755 0.14 -0.3
168,816 + CSW01_14755 0.15 +1.2
168,827 + CSW01_14755 0.15 +0.2
168,860 - CSW01_14755 0.18 -0.4
168,959 - CSW01_14755 0.25 +0.0
169,049 - CSW01_14755 0.32 -0.7
169,185 - CSW01_14755 0.42 +0.6
169,185 - CSW01_14755 0.42 -0.7
169,195 - CSW01_14755 0.43 -0.5
169,247 + CSW01_14755 0.46 -0.4
169,260 + CSW01_14755 0.47 -0.9
169,268 - CSW01_14755 0.48 -0.3
169,366 - CSW01_14755 0.55 -1.1
169,386 + CSW01_14755 0.57 +1.3
169,386 + CSW01_14755 0.57 +0.2
169,386 + CSW01_14755 0.57 -0.7
169,394 - CSW01_14755 0.57 +0.3
169,394 - CSW01_14755 0.57 +0.2
169,394 - CSW01_14755 0.57 -0.1
169,404 - CSW01_14755 0.58 -0.4
169,411 - CSW01_14755 0.59 -0.8
169,479 - CSW01_14755 0.64 +0.1
169,534 - CSW01_14755 0.68 +0.6
169,572 - CSW01_14755 0.70 +0.1
169,843 + -0.4
169,931 + -0.1
169,974 - -0.2
169,984 + -0.3
169,992 - +0.5
169,992 - +1.0
169,994 + +0.6
170,017 - -0.3
170,116 + CSW01_14760 0.22 +0.3
170,116 + CSW01_14760 0.22 +0.8
170,116 + CSW01_14760 0.22 -0.3
170,165 + CSW01_14760 0.37 -0.8
170,170 + CSW01_14760 0.38 +1.7
170,178 - CSW01_14760 0.41 -0.7
170,203 + CSW01_14760 0.48 +0.0
170,203 + CSW01_14760 0.48 -0.1
170,221 + CSW01_14760 0.54 -0.2
170,226 + CSW01_14760 0.56 -0.2
170,435 + CSW01_14765 0.21 +0.2
170,435 + CSW01_14765 0.21 +0.0
170,435 + CSW01_14765 0.21 +0.2
170,441 + CSW01_14765 0.23 -1.3
170,443 - CSW01_14765 0.24 -0.1
170,443 - CSW01_14765 0.24 -0.6
170,449 - CSW01_14765 0.26 +1.3
170,558 + CSW01_14765 0.61 -0.7
170,558 + CSW01_14765 0.61 -0.5
170,558 + CSW01_14765 0.61 +0.6
170,558 + CSW01_14765 0.61 +0.3
170,566 - CSW01_14765 0.63 -0.3
170,566 - CSW01_14765 0.63 +0.2
170,566 - CSW01_14765 0.63 -2.8
170,566 - CSW01_14765 0.63 -0.2
170,581 - CSW01_14765 0.68 +0.6
170,640 - +0.2
170,713 + CSW01_14770 0.15 -0.6
170,713 + CSW01_14770 0.15 -0.3
170,723 - CSW01_14770 0.17 -0.3
170,807 - CSW01_14770 0.35 -0.3
170,859 - CSW01_14770 0.46 -0.3
170,870 + CSW01_14770 0.48 +0.3
170,898 - CSW01_14770 0.54 -0.1

Or see this region's nucleotide sequence