Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12415

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
2,665,021	+		CSW01_12410	0.38	-0.1
2,665,080	+		CSW01_12410	0.42	+0.7
2,665,088	-		CSW01_12410	0.43	-0.3
2,665,130	+		CSW01_12410	0.46	-0.4
2,665,138	-		CSW01_12410	0.47	-0.3
2,665,165	+		CSW01_12410	0.49	-0.3
2,665,173	+		CSW01_12410	0.49	-0.7
2,665,181	-		CSW01_12410	0.50	-0.4
2,665,227	+		CSW01_12410	0.53	+1.1
2,665,275	-		CSW01_12410	0.57	+0.8
2,665,275	-		CSW01_12410	0.57	+0.2
2,665,416	+		CSW01_12410	0.68	+0.2
2,665,421	+		CSW01_12410	0.68	+0.9
2,665,459	+		CSW01_12410	0.71	-0.5
2,665,478	+		CSW01_12410	0.72	+0.1
2,665,478	+		CSW01_12410	0.72	+1.0
2,665,478	+		CSW01_12410	0.72	+0.3
2,665,478	+		CSW01_12410	0.72	+0.3
2,665,478	+		CSW01_12410	0.72	-0.2
2,665,485	+		CSW01_12410	0.73	+0.2
2,665,486	-		CSW01_12410	0.73	+0.6
2,665,486	-		CSW01_12410	0.73	-0.2
2,665,486	-		CSW01_12410	0.73	-1.3
2,665,486	-		CSW01_12410	0.73	-0.4
2,665,486	-		CSW01_12410	0.73	-1.6
2,665,486	-		CSW01_12410	0.73	-0.4
2,665,491	-		CSW01_12410	0.73	+0.1
2,665,493	-		CSW01_12410	0.73	-1.4
2,665,514	+		CSW01_12410	0.75	-0.8
2,665,523	-		CSW01_12410	0.76	-1.1
2,665,539	+		CSW01_12410	0.77	-0.4
2,665,636	+		CSW01_12410	0.84	-0.3
2,665,668	-		CSW01_12410	0.87	-0.2
2,665,670	+		CSW01_12410	0.87	-0.1
2,665,775	+				-1.0
2,665,783	-				+0.1
2,665,802	+				+0.7
2,665,838	+				+0.5
2,665,848	-				+0.3
2,665,850	+				+0.6
2,665,850	+				-0.0
2,665,852	+				-0.6
2,665,858	-				+0.3
2,665,858	-				-0.6
2,665,897	-				+0.8
2,665,899	+				+0.5
2,665,931	+				+0.3
2,665,997	+				+0.1
2,666,013	+				-0.4
2,666,057	+				+2.7
2,666,141	+				+0.1
2,666,236	+				+0.7
2,666,311	-		CSW01_12415	0.11	-0.9
2,666,354	+		CSW01_12415	0.12	+1.5
2,666,447	-		CSW01_12415	0.15	-0.2
2,666,488	-		CSW01_12415	0.17	+0.1
2,666,518	+		CSW01_12415	0.18	+0.3
2,666,550	+		CSW01_12415	0.19	+0.4
2,666,550	+		CSW01_12415	0.19	+0.1
2,666,550	+		CSW01_12415	0.19	-1.3
2,666,668	+		CSW01_12415	0.23	-0.6
2,666,694	+		CSW01_12415	0.24	+0.1
2,666,812	+		CSW01_12415	0.29	-0.4
2,666,812	+		CSW01_12415	0.29	+0.4
2,666,820	-		CSW01_12415	0.29	+0.9
2,666,820	-		CSW01_12415	0.29	+0.3
2,666,820	-		CSW01_12415	0.29	-0.2
2,666,820	-		CSW01_12415	0.29	-0.3
2,666,820	-		CSW01_12415	0.29	+0.2
2,666,911	+		CSW01_12415	0.32	-0.7
2,666,919	-		CSW01_12415	0.32	+1.6
2,666,930	+		CSW01_12415	0.33	+1.1
2,666,930	+		CSW01_12415	0.33	+1.5
2,666,984	+		CSW01_12415	0.35	-0.8
2,667,182	+		CSW01_12415	0.42	-0.9
2,667,276	-		CSW01_12415	0.45	+0.1
2,667,295	-		CSW01_12415	0.46	+0.7
2,667,338	-		CSW01_12415	0.47	+0.5
2,667,396	+		CSW01_12415	0.50	+0.3
2,667,456	+		CSW01_12415	0.52	+0.1
2,667,464	-		CSW01_12415	0.52	-0.9
2,667,464	-		CSW01_12415	0.52	+1.7
2,667,475	+		CSW01_12415	0.52	+0.2
2,667,490	+		CSW01_12415	0.53	+0.2
2,667,533	+		CSW01_12415	0.54	+0.1
2,667,542	-		CSW01_12415	0.55	+0.5
2,667,542	-		CSW01_12415	0.55	+0.6
2,667,555	-		CSW01_12415	0.55	+0.1
2,667,555	-		CSW01_12415	0.55	+1.2
2,667,555	-		CSW01_12415	0.55	+0.9
2,667,568	+		CSW01_12415	0.56	+1.6
2,667,568	+		CSW01_12415	0.56	+2.4
2,667,568	+		CSW01_12415	0.56	+1.6
2,667,568	+		CSW01_12415	0.56	-0.2
2,667,576	-		CSW01_12415	0.56	-0.2
2,667,576	-		CSW01_12415	0.56	+0.3
2,667,576	-		CSW01_12415	0.56	-0.2
2,667,586	-		CSW01_12415	0.56	+0.5
2,667,742	+		CSW01_12415	0.62	-0.2
2,667,747	-		CSW01_12415	0.62	-0.0
2,667,747	-		CSW01_12415	0.62	-0.3
2,667,747	-		CSW01_12415	0.62	+0.0
2,667,749	+		CSW01_12415	0.62	+0.7
2,667,762	-		CSW01_12415	0.63	+0.4
2,667,823	+		CSW01_12415	0.65	-0.2
2,667,858	-		CSW01_12415	0.66	+0.3
2,667,863	-		CSW01_12415	0.66	+1.6
2,667,863	-		CSW01_12415	0.66	+0.1
2,668,133	-		CSW01_12415	0.76	+0.2
2,668,211	+		CSW01_12415	0.79	+0.8
2,668,211	+		CSW01_12415	0.79	+1.2
2,668,219	-		CSW01_12415	0.79	+0.7
2,668,256	+		CSW01_12415	0.80	+1.0
2,668,264	-		CSW01_12415	0.81	+0.6
2,668,326	+		CSW01_12415	0.83	+0.4
2,668,436	-		CSW01_12415	0.87	-1.1
2,668,436	-		CSW01_12415	0.87	-0.0
2,668,436	-		CSW01_12415	0.87	+1.2
2,668,458	-		CSW01_12415	0.88	-0.2
2,668,565	+				+0.3
2,668,565	+				+1.3
2,668,565	+				+0.3
2,668,595	-				+0.3
2,668,700	+				-0.3
2,668,798	+				+0.2
2,668,802	+				+1.1
2,668,838	+				-0.6
2,668,870	+				+0.9
2,668,880	+				+0.1
2,668,892	+				-2.0
2,668,892	+				-0.6
2,668,900	-				-0.9
2,668,900	-				+0.1
2,668,908	+				-1.3
2,668,954	-		CSW01_12420	0.13	-0.0
2,668,954	-		CSW01_12420	0.13	-0.1
2,668,988	+		CSW01_12420	0.16	+0.4
2,668,996	-		CSW01_12420	0.16	-0.6
2,669,003	+		CSW01_12420	0.17	+0.3
2,669,008	+		CSW01_12420	0.17	-0.5
2,669,008	+		CSW01_12420	0.17	+0.5
2,669,016	-		CSW01_12420	0.18	-1.4
2,669,016	-		CSW01_12420	0.18	-0.2
2,669,018	+		CSW01_12420	0.18	+0.1
2,669,021	-		CSW01_12420	0.18	-0.4
2,669,103	-		CSW01_12420	0.24	-1.1
2,669,212	-		CSW01_12420	0.33	+0.0
2,669,218	+		CSW01_12420	0.33	-0.2
2,669,218	+		CSW01_12420	0.33	-0.0
2,669,218	+		CSW01_12420	0.33	-0.4
2,669,226	-		CSW01_12420	0.34	-1.7
2,669,226	-		CSW01_12420	0.34	+1.8
2,669,226	-		CSW01_12420	0.34	+0.5
2,669,327	+		CSW01_12420	0.42	+2.1
2,669,396	-		CSW01_12420	0.47	+0.2
2,669,545	-		CSW01_12420	0.59	-0.2
2,669,568	+		CSW01_12420	0.60	-0.1
2,669,576	-		CSW01_12420	0.61	+0.6
2,669,729	+		CSW01_12420	0.73	-3.5
2,669,755	-		CSW01_12420	0.75	-1.3
2,669,783	+		CSW01_12420	0.77	+0.8