Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11400

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
2,421,392	+		CSW01_11390	0.85	+0.1
2,421,392	+		CSW01_11390	0.85	-0.1
2,421,405	-		CSW01_11390	0.87	-0.2
2,421,407	+		CSW01_11390	0.87	+0.5
2,421,407	+		CSW01_11390	0.87	-0.6
2,421,415	-		CSW01_11390	0.88	+0.4
2,421,415	-		CSW01_11390	0.88	+0.1
2,421,475	+				-0.4
2,421,631	+		CSW01_11395	0.12	-0.7
2,421,631	+		CSW01_11395	0.12	-0.2
2,421,631	+		CSW01_11395	0.12	+1.2
2,421,631	+		CSW01_11395	0.12	+0.1
2,421,639	-		CSW01_11395	0.13	+0.3
2,421,639	-		CSW01_11395	0.13	-0.7
2,421,639	-		CSW01_11395	0.13	+0.5
2,421,652	+		CSW01_11395	0.15	-0.6
2,421,674	+		CSW01_11395	0.18	+0.9
2,421,774	-		CSW01_11395	0.31	-0.3
2,421,779	-		CSW01_11395	0.32	-0.1
2,421,871	+		CSW01_11395	0.44	-0.1
2,421,871	+		CSW01_11395	0.44	+0.8
2,421,871	+		CSW01_11395	0.44	+0.2
2,421,871	+		CSW01_11395	0.44	+0.2
2,421,871	+		CSW01_11395	0.44	-0.7
2,421,871	+		CSW01_11395	0.44	+0.9
2,421,871	+		CSW01_11395	0.44	-1.5
2,421,871	+		CSW01_11395	0.44	+1.5
2,421,871	+		CSW01_11395	0.44	+0.2
2,421,871	+		CSW01_11395	0.44	-0.4
2,421,871	+		CSW01_11395	0.44	-0.2
2,421,872	-		CSW01_11395	0.44	+1.2
2,421,879	-		CSW01_11395	0.45	+0.4
2,421,879	-		CSW01_11395	0.45	-1.0
2,421,879	-		CSW01_11395	0.45	+0.3
2,421,879	-		CSW01_11395	0.45	+0.1
2,421,879	-		CSW01_11395	0.45	-0.7
2,421,879	-		CSW01_11395	0.45	-1.1
2,421,879	-		CSW01_11395	0.45	-0.1
2,421,879	-		CSW01_11395	0.45	-0.5
2,421,879	-		CSW01_11395	0.45	+0.4
2,421,879	-		CSW01_11395	0.45	+0.7
2,421,916	-		CSW01_11395	0.50	+0.8
2,421,979	-		CSW01_11395	0.58	+0.0
2,421,981	+		CSW01_11395	0.58	+1.2
2,422,005	+		CSW01_11395	0.62	-1.7
2,422,012	-		CSW01_11395	0.63	+0.0
2,422,032	+		CSW01_11395	0.65	-0.9
2,422,032	+		CSW01_11395	0.65	-0.4
2,422,034	+		CSW01_11395	0.65	-0.2
2,422,040	-		CSW01_11395	0.66	-0.9
2,422,040	-		CSW01_11395	0.66	+0.6
2,422,163	-		CSW01_11395	0.82	+0.8
2,422,195	+		CSW01_11395	0.87	-0.1
2,422,195	+		CSW01_11395	0.87	+0.2
2,422,203	-		CSW01_11395	0.88	+0.2
2,422,203	-		CSW01_11395	0.88	+1.0
2,422,203	-		CSW01_11395	0.88	-0.5
2,422,203	-		CSW01_11395	0.88	+0.5
2,422,274	-				-0.2
2,422,355	+				-0.2
2,422,396	-				+0.5
2,422,465	-				-0.0
2,422,487	-				+0.0
2,422,588	-		CSW01_11400	0.14	-0.7
2,422,607	+		CSW01_11400	0.15	+0.6
2,422,615	+		CSW01_11400	0.16	+0.5
2,422,637	+		CSW01_11400	0.17	-0.0
2,422,714	+		CSW01_11400	0.22	-0.0
2,422,844	-		CSW01_11400	0.30	-1.5
2,422,875	-		CSW01_11400	0.32	-1.1
2,422,901	-		CSW01_11400	0.33	-0.5
2,422,939	+		CSW01_11400	0.36	-0.4
2,422,939	+		CSW01_11400	0.36	+0.1
2,422,939	+		CSW01_11400	0.36	-0.3
2,422,947	-		CSW01_11400	0.36	+0.3
2,422,952	+		CSW01_11400	0.37	-0.5
2,422,952	+		CSW01_11400	0.37	+0.0
2,422,952	+		CSW01_11400	0.37	-0.8
2,422,960	-		CSW01_11400	0.37	+1.1
2,422,960	-		CSW01_11400	0.37	+0.8
2,422,960	-		CSW01_11400	0.37	+1.3
2,422,966	+		CSW01_11400	0.37	+0.4
2,423,005	-		CSW01_11400	0.40	-0.4
2,423,015	-		CSW01_11400	0.41	-0.2
2,423,017	-		CSW01_11400	0.41	+0.3
2,423,017	-		CSW01_11400	0.41	+0.3
2,423,017	-		CSW01_11400	0.41	-0.5
2,423,017	-		CSW01_11400	0.41	-1.7
2,423,100	+		CSW01_11400	0.46	+0.2
2,423,103	+		CSW01_11400	0.46	-0.7
2,423,111	-		CSW01_11400	0.47	-0.2
2,423,123	+		CSW01_11400	0.47	-0.4
2,423,192	+		CSW01_11400	0.52	-1.3
2,423,192	+		CSW01_11400	0.52	-0.1
2,423,192	+		CSW01_11400	0.52	-2.5
2,423,192	+		CSW01_11400	0.52	-0.7
2,423,192	+		CSW01_11400	0.52	-3.4
2,423,200	-		CSW01_11400	0.52	+0.2
2,423,200	-		CSW01_11400	0.52	+0.2
2,423,200	-		CSW01_11400	0.52	-0.5
2,423,200	-		CSW01_11400	0.52	+0.2
2,423,200	-		CSW01_11400	0.52	+0.5
2,423,202	+		CSW01_11400	0.52	-0.4
2,423,245	+		CSW01_11400	0.55	-0.5
2,423,277	+		CSW01_11400	0.57	-0.1
2,423,277	+		CSW01_11400	0.57	+0.6
2,423,277	+		CSW01_11400	0.57	-0.5
2,423,277	+		CSW01_11400	0.57	+0.0
2,423,277	+		CSW01_11400	0.57	-0.4
2,423,277	+		CSW01_11400	0.57	+0.9
2,423,277	+		CSW01_11400	0.57	+0.3
2,423,277	+		CSW01_11400	0.57	-0.2
2,423,277	+		CSW01_11400	0.57	-1.1
2,423,285	-		CSW01_11400	0.57	+0.2
2,423,285	-		CSW01_11400	0.57	-0.3
2,423,285	-		CSW01_11400	0.57	-0.1
2,423,285	-		CSW01_11400	0.57	+2.9
2,423,285	-		CSW01_11400	0.57	+1.0
2,423,285	-		CSW01_11400	0.57	+0.0
2,423,285	-		CSW01_11400	0.57	+1.2
2,423,285	-		CSW01_11400	0.57	-0.5
2,423,286	-		CSW01_11400	0.57	+1.5
2,423,286	-		CSW01_11400	0.57	-1.1
2,423,286	-		CSW01_11400	0.57	-0.8
2,423,288	+		CSW01_11400	0.58	-0.2
2,423,288	+		CSW01_11400	0.58	-0.3
2,423,296	-		CSW01_11400	0.58	-0.5
2,423,340	-		CSW01_11400	0.61	-0.3
2,423,375	+		CSW01_11400	0.63	-0.4
2,423,394	+		CSW01_11400	0.64	+0.2
2,423,455	+		CSW01_11400	0.68	+0.8
2,423,455	+		CSW01_11400	0.68	+0.9
2,423,455	+		CSW01_11400	0.68	+0.2
2,423,463	-		CSW01_11400	0.69	-2.0
2,423,513	+		CSW01_11400	0.72	-0.3
2,423,562	+		CSW01_11400	0.75	+0.2
2,423,591	+		CSW01_11400	0.77	-0.9
2,423,599	-		CSW01_11400	0.77	-0.1
2,423,604	-		CSW01_11400	0.77	-0.4
2,423,656	+		CSW01_11400	0.81	-0.3
2,423,656	-		CSW01_11400	0.81	-0.9
2,423,664	-		CSW01_11400	0.81	+0.7
2,423,677	+		CSW01_11400	0.82	-0.7
2,423,677	+		CSW01_11400	0.82	-0.3
2,423,737	+		CSW01_11400	0.86	-0.3
2,423,737	+		CSW01_11400	0.86	-0.1
2,423,737	+		CSW01_11400	0.86	+0.1
2,423,737	+		CSW01_11400	0.86	-1.7
2,423,745	-		CSW01_11400	0.86	+0.1
2,423,745	-		CSW01_11400	0.86	+0.9
2,423,745	-		CSW01_11400	0.86	-0.2
2,423,745	-		CSW01_11400	0.86	-1.7
2,423,888	+				-0.0
2,423,958	+				-0.0
2,423,960	+				+0.1
2,423,960	+				-0.8
2,423,965	+				+0.2
2,423,968	-				+0.7
2,423,970	+				+1.3
2,423,973	-				-0.4
2,423,978	-				+0.9
2,423,988	-				-1.2
2,424,090	+		CSW01_11405	0.13	-0.5
2,424,161	+		CSW01_11405	0.21	-0.9
2,424,164	+		CSW01_11405	0.22	+0.1
2,424,166	+		CSW01_11405	0.22	-0.5
2,424,166	+		CSW01_11405	0.22	+0.6
2,424,166	+		CSW01_11405	0.22	+0.1
2,424,169	-		CSW01_11405	0.22	-0.7
2,424,174	-		CSW01_11405	0.23	+0.0
2,424,174	-		CSW01_11405	0.23	-0.6
2,424,174	-		CSW01_11405	0.23	-0.1
2,424,338	-		CSW01_11405	0.42	+0.9
2,424,392	-		CSW01_11405	0.48	-0.6
2,424,399	-		CSW01_11405	0.49	+0.8
2,424,409	+		CSW01_11405	0.50	+0.5
2,424,448	+		CSW01_11405	0.55	+0.1
2,424,521	+		CSW01_11405	0.64	-0.8
2,424,601	-		CSW01_11405	0.73	-1.0
2,424,601	-		CSW01_11405	0.73	+1.5
2,424,601	-		CSW01_11405	0.73	-0.4
2,424,719	+		CSW01_11405	0.87	-4.0
2,424,719	+		CSW01_11405	0.87	+0.3
2,424,727	-		CSW01_11405	0.88	-0.2
2,424,905	+				+1.2