Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_09245 and CSW01_09250 are separated by 96 nucleotides CSW01_09250 and CSW01_09255 are separated by 87 nucleotides CSW01_09255 and CSW01_09260 are separated by 145 nucleotides CSW01_09260 and CSW01_09265 are separated by 40 nucleotides
CSW01_09245: CSW01_09245 - Holliday junction branch migration protein RuvA, at 1,984,718 to 1,985,332
_09245
CSW01_09250: CSW01_09250 - crossover junction endodeoxyribonuclease RuvC, at 1,985,429 to 1,985,950
_09250
CSW01_09255: CSW01_09255 - cysteine--tRNA ligase, at 1,986,038 to 1,987,417
_09255
CSW01_09260: CSW01_09260 - peptidylprolyl isomerase, at 1,987,563 to 1,988,057
_09260
CSW01_09265: CSW01_09265 - UDP-2,3-diacylglucosamine diphosphatase, at 1,988,098 to 1,988,827
_09265
Position (kb) 1986
1987
1988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1985.081 kb on - strand, within CSW01_09245 at 1985.100 kb on + strand, within CSW01_09245 at 1985.112 kb on + strand, within CSW01_09245 at 1985.139 kb on - strand, within CSW01_09245 at 1985.161 kb on - strand, within CSW01_09245 at 1985.176 kb on + strand, within CSW01_09245 at 1985.219 kb on - strand, within CSW01_09245 at 1985.462 kb on - strand at 1985.515 kb on + strand, within CSW01_09250 at 1985.538 kb on + strand, within CSW01_09250 at 1985.538 kb on + strand, within CSW01_09250 at 1985.546 kb on - strand, within CSW01_09250 at 1985.587 kb on - strand, within CSW01_09250 at 1985.876 kb on + strand, within CSW01_09250 at 1985.955 kb on - strand at 1985.987 kb on - strand at 1986.007 kb on + strand at 1987.457 kb on + strand at 1987.457 kb on + strand at 1987.553 kb on + strand at 1987.562 kb on + strand at 1987.680 kb on + strand, within CSW01_09260 at 1987.729 kb on + strand, within CSW01_09260 at 1987.729 kb on + strand, within CSW01_09260 at 1987.729 kb on + strand, within CSW01_09260 at 1987.729 kb on + strand, within CSW01_09260 at 1987.729 kb on + strand, within CSW01_09260 at 1987.780 kb on + strand, within CSW01_09260 at 1987.792 kb on + strand, within CSW01_09260 at 1988.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B remove 1,985,081 - CSW01_09245 0.59 -1.4 1,985,100 + CSW01_09245 0.62 -2.7 1,985,112 + CSW01_09245 0.64 +1.0 1,985,139 - CSW01_09245 0.68 -1.9 1,985,161 - CSW01_09245 0.72 +0.2 1,985,176 + CSW01_09245 0.74 -0.8 1,985,219 - CSW01_09245 0.81 -3.1 1,985,462 - -1.0 1,985,515 + CSW01_09250 0.16 -2.8 1,985,538 + CSW01_09250 0.21 +0.2 1,985,538 + CSW01_09250 0.21 +0.2 1,985,546 - CSW01_09250 0.22 +1.8 1,985,587 - CSW01_09250 0.30 +0.2 1,985,876 + CSW01_09250 0.86 -1.8 1,985,955 - -0.3 1,985,987 - -0.9 1,986,007 + +0.6 1,987,457 + -1.1 1,987,457 + -0.1 1,987,553 + -0.1 1,987,562 + +0.3 1,987,680 + CSW01_09260 0.24 -0.4 1,987,729 + CSW01_09260 0.34 -0.1 1,987,729 + CSW01_09260 0.34 -0.3 1,987,729 + CSW01_09260 0.34 -1.4 1,987,729 + CSW01_09260 0.34 -0.3 1,987,729 + CSW01_09260 0.34 +0.3 1,987,780 + CSW01_09260 0.44 +0.2 1,987,792 + CSW01_09260 0.46 -0.0 1,988,052 + +0.2
Or see this region's nucleotide sequence