Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_08770 and CSW01_08775 are separated by 76 nucleotides CSW01_08775 and CSW01_08780 overlap by 101 nucleotides CSW01_08780 and CSW01_08785 are separated by 10 nucleotides
CSW01_08765: CSW01_08765 - TetR/AcrR family transcriptional regulator, at 1,880,479 to 1,881,108
_08765
CSW01_08770: CSW01_08770 - hypothetical protein, at 1,881,034 to 1,881,258
_08770
CSW01_08775: CSW01_08775 - hypothetical protein, at 1,881,335 to 1,882,159
_08775
CSW01_08780: CSW01_08780 - hypothetical protein, at 1,882,059 to 1,883,285
_08780
CSW01_08785: CSW01_08785 - DUF4056 domain-containing protein, at 1,883,296 to 1,884,417
_08785
Position (kb)
1882
1883
1884 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1881.214 kb on + strand, within CSW01_08770 at 1881.294 kb on + strand at 1881.319 kb on + strand at 1881.319 kb on + strand at 1881.384 kb on + strand at 1881.392 kb on - strand at 1881.465 kb on + strand, within CSW01_08775 at 1881.473 kb on - strand, within CSW01_08775 at 1881.602 kb on + strand, within CSW01_08775 at 1881.634 kb on - strand, within CSW01_08775 at 1881.643 kb on - strand, within CSW01_08775 at 1881.669 kb on - strand, within CSW01_08775 at 1881.695 kb on + strand, within CSW01_08775 at 1881.703 kb on - strand, within CSW01_08775 at 1881.748 kb on + strand, within CSW01_08775 at 1881.763 kb on + strand, within CSW01_08775 at 1881.771 kb on - strand, within CSW01_08775 at 1881.778 kb on + strand, within CSW01_08775 at 1881.798 kb on + strand, within CSW01_08775 at 1881.827 kb on - strand, within CSW01_08775 at 1881.840 kb on + strand, within CSW01_08775 at 1881.848 kb on - strand, within CSW01_08775 at 1881.872 kb on + strand, within CSW01_08775 at 1881.992 kb on + strand, within CSW01_08775 at 1882.094 kb on - strand at 1882.144 kb on + strand at 1882.152 kb on - strand at 1882.355 kb on - strand, within CSW01_08780 at 1882.355 kb on - strand, within CSW01_08780 at 1882.383 kb on - strand, within CSW01_08780 at 1882.412 kb on + strand, within CSW01_08780 at 1882.521 kb on + strand, within CSW01_08780 at 1882.531 kb on + strand, within CSW01_08780 at 1882.531 kb on + strand, within CSW01_08780 at 1882.619 kb on + strand, within CSW01_08780 at 1882.644 kb on - strand, within CSW01_08780 at 1882.741 kb on - strand, within CSW01_08780 at 1882.773 kb on + strand, within CSW01_08780 at 1882.781 kb on - strand, within CSW01_08780 at 1882.781 kb on - strand, within CSW01_08780 at 1882.884 kb on + strand, within CSW01_08780 at 1882.950 kb on - strand, within CSW01_08780 at 1882.970 kb on + strand, within CSW01_08780 at 1883.048 kb on + strand, within CSW01_08780 at 1883.061 kb on - strand, within CSW01_08780 at 1883.103 kb on + strand, within CSW01_08780 at 1883.117 kb on - strand, within CSW01_08780 at 1883.311 kb on + strand at 1883.311 kb on + strand at 1883.347 kb on + strand at 1883.347 kb on + strand at 1883.355 kb on - strand at 1883.355 kb on - strand at 1883.360 kb on - strand at 1883.377 kb on - strand at 1883.377 kb on - strand at 1883.451 kb on + strand, within CSW01_08785 at 1883.511 kb on - strand, within CSW01_08785 at 1883.537 kb on + strand, within CSW01_08785 at 1883.539 kb on - strand, within CSW01_08785 at 1883.595 kb on + strand, within CSW01_08785 at 1883.595 kb on + strand, within CSW01_08785 at 1883.603 kb on - strand, within CSW01_08785 at 1883.633 kb on + strand, within CSW01_08785 at 1883.662 kb on + strand, within CSW01_08785 at 1883.744 kb on + strand, within CSW01_08785 at 1883.752 kb on - strand, within CSW01_08785 at 1883.752 kb on - strand, within CSW01_08785 at 1883.827 kb on + strand, within CSW01_08785 at 1883.828 kb on + strand, within CSW01_08785 at 1883.829 kb on - strand, within CSW01_08785 at 1883.892 kb on + strand, within CSW01_08785 at 1883.933 kb on - strand, within CSW01_08785 at 1884.009 kb on + strand, within CSW01_08785 at 1884.009 kb on + strand, within CSW01_08785 at 1884.009 kb on + strand, within CSW01_08785 at 1884.050 kb on + strand, within CSW01_08785 at 1884.082 kb on - strand, within CSW01_08785 at 1884.104 kb on - strand, within CSW01_08785 at 1884.104 kb on - strand, within CSW01_08785 at 1884.135 kb on - strand, within CSW01_08785 at 1884.141 kb on + strand, within CSW01_08785 at 1884.149 kb on - strand, within CSW01_08785 at 1884.282 kb on + strand, within CSW01_08785 at 1884.282 kb on + strand, within CSW01_08785
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B remove 1,881,214 + CSW01_08770 0.80 -1.7 1,881,294 + +1.9 1,881,319 + +0.1 1,881,319 + +2.5 1,881,384 + -0.4 1,881,392 - +1.4 1,881,465 + CSW01_08775 0.16 -1.3 1,881,473 - CSW01_08775 0.17 -0.1 1,881,602 + CSW01_08775 0.32 +1.7 1,881,634 - CSW01_08775 0.36 -0.2 1,881,643 - CSW01_08775 0.37 -0.0 1,881,669 - CSW01_08775 0.40 +0.3 1,881,695 + CSW01_08775 0.44 +1.1 1,881,703 - CSW01_08775 0.45 -0.2 1,881,748 + CSW01_08775 0.50 -0.3 1,881,763 + CSW01_08775 0.52 +0.3 1,881,771 - CSW01_08775 0.53 -1.3 1,881,778 + CSW01_08775 0.54 +0.3 1,881,798 + CSW01_08775 0.56 -0.0 1,881,827 - CSW01_08775 0.60 -0.8 1,881,840 + CSW01_08775 0.61 -1.0 1,881,848 - CSW01_08775 0.62 +0.1 1,881,872 + CSW01_08775 0.65 +0.0 1,881,992 + CSW01_08775 0.80 +1.0 1,882,094 - -0.1 1,882,144 + +0.3 1,882,152 - +0.5 1,882,355 - CSW01_08780 0.24 -0.3 1,882,355 - CSW01_08780 0.24 +0.7 1,882,383 - CSW01_08780 0.26 -0.4 1,882,412 + CSW01_08780 0.29 +0.0 1,882,521 + CSW01_08780 0.38 -0.3 1,882,531 + CSW01_08780 0.38 +0.6 1,882,531 + CSW01_08780 0.38 +0.6 1,882,619 + CSW01_08780 0.46 -0.5 1,882,644 - CSW01_08780 0.48 -0.2 1,882,741 - CSW01_08780 0.56 -1.2 1,882,773 + CSW01_08780 0.58 -0.5 1,882,781 - CSW01_08780 0.59 -0.7 1,882,781 - CSW01_08780 0.59 -0.4 1,882,884 + CSW01_08780 0.67 +0.8 1,882,950 - CSW01_08780 0.73 +0.1 1,882,970 + CSW01_08780 0.74 +0.1 1,883,048 + CSW01_08780 0.81 -0.8 1,883,061 - CSW01_08780 0.82 -1.5 1,883,103 + CSW01_08780 0.85 -0.9 1,883,117 - CSW01_08780 0.86 +0.8 1,883,311 + -2.5 1,883,311 + +0.0 1,883,347 + -0.5 1,883,347 + -1.1 1,883,355 - -0.1 1,883,355 - -1.7 1,883,360 - -0.3 1,883,377 - -1.6 1,883,377 - +0.4 1,883,451 + CSW01_08785 0.14 -0.2 1,883,511 - CSW01_08785 0.19 -0.4 1,883,537 + CSW01_08785 0.21 -0.1 1,883,539 - CSW01_08785 0.22 +0.1 1,883,595 + CSW01_08785 0.27 -1.4 1,883,595 + CSW01_08785 0.27 -0.4 1,883,603 - CSW01_08785 0.27 +0.4 1,883,633 + CSW01_08785 0.30 -0.0 1,883,662 + CSW01_08785 0.33 +0.3 1,883,744 + CSW01_08785 0.40 -0.3 1,883,752 - CSW01_08785 0.41 -0.4 1,883,752 - CSW01_08785 0.41 -0.7 1,883,827 + CSW01_08785 0.47 -0.2 1,883,828 + CSW01_08785 0.47 -0.2 1,883,829 - CSW01_08785 0.48 -0.8 1,883,892 + CSW01_08785 0.53 -0.3 1,883,933 - CSW01_08785 0.57 -2.4 1,884,009 + CSW01_08785 0.64 -0.2 1,884,009 + CSW01_08785 0.64 +0.6 1,884,009 + CSW01_08785 0.64 -1.1 1,884,050 + CSW01_08785 0.67 +0.8 1,884,082 - CSW01_08785 0.70 -0.8 1,884,104 - CSW01_08785 0.72 -1.4 1,884,104 - CSW01_08785 0.72 +0.7 1,884,135 - CSW01_08785 0.75 -1.3 1,884,141 + CSW01_08785 0.75 -0.8 1,884,149 - CSW01_08785 0.76 -0.8 1,884,282 + CSW01_08785 0.88 -0.6 1,884,282 + CSW01_08785 0.88 +0.6
Or see this region's nucleotide sequence