Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08780

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_08770 and CSW01_08775 are separated by 76 nucleotidesCSW01_08775 and CSW01_08780 overlap by 101 nucleotidesCSW01_08780 and CSW01_08785 are separated by 10 nucleotides CSW01_08765: CSW01_08765 - TetR/AcrR family transcriptional regulator, at 1,880,479 to 1,881,108 _08765 CSW01_08770: CSW01_08770 - hypothetical protein, at 1,881,034 to 1,881,258 _08770 CSW01_08775: CSW01_08775 - hypothetical protein, at 1,881,335 to 1,882,159 _08775 CSW01_08780: CSW01_08780 - hypothetical protein, at 1,882,059 to 1,883,285 _08780 CSW01_08785: CSW01_08785 - DUF4056 domain-containing protein, at 1,883,296 to 1,884,417 _08785 Position (kb) 1882 1883 1884Strain fitness (log2 ratio) -2 -1 0 1 2at 1881.214 kb on + strand, within CSW01_08770at 1881.294 kb on + strandat 1881.319 kb on + strandat 1881.319 kb on + strandat 1881.384 kb on + strandat 1881.392 kb on - strandat 1881.465 kb on + strand, within CSW01_08775at 1881.473 kb on - strand, within CSW01_08775at 1881.602 kb on + strand, within CSW01_08775at 1881.634 kb on - strand, within CSW01_08775at 1881.643 kb on - strand, within CSW01_08775at 1881.669 kb on - strand, within CSW01_08775at 1881.695 kb on + strand, within CSW01_08775at 1881.703 kb on - strand, within CSW01_08775at 1881.748 kb on + strand, within CSW01_08775at 1881.763 kb on + strand, within CSW01_08775at 1881.771 kb on - strand, within CSW01_08775at 1881.778 kb on + strand, within CSW01_08775at 1881.798 kb on + strand, within CSW01_08775at 1881.827 kb on - strand, within CSW01_08775at 1881.840 kb on + strand, within CSW01_08775at 1881.848 kb on - strand, within CSW01_08775at 1881.872 kb on + strand, within CSW01_08775at 1881.992 kb on + strand, within CSW01_08775at 1882.094 kb on - strandat 1882.144 kb on + strandat 1882.152 kb on - strandat 1882.355 kb on - strand, within CSW01_08780at 1882.355 kb on - strand, within CSW01_08780at 1882.383 kb on - strand, within CSW01_08780at 1882.412 kb on + strand, within CSW01_08780at 1882.521 kb on + strand, within CSW01_08780at 1882.531 kb on + strand, within CSW01_08780at 1882.531 kb on + strand, within CSW01_08780at 1882.619 kb on + strand, within CSW01_08780at 1882.644 kb on - strand, within CSW01_08780at 1882.741 kb on - strand, within CSW01_08780at 1882.773 kb on + strand, within CSW01_08780at 1882.781 kb on - strand, within CSW01_08780at 1882.781 kb on - strand, within CSW01_08780at 1882.884 kb on + strand, within CSW01_08780at 1882.950 kb on - strand, within CSW01_08780at 1882.970 kb on + strand, within CSW01_08780at 1883.048 kb on + strand, within CSW01_08780at 1883.061 kb on - strand, within CSW01_08780at 1883.103 kb on + strand, within CSW01_08780at 1883.117 kb on - strand, within CSW01_08780at 1883.311 kb on + strandat 1883.311 kb on + strandat 1883.347 kb on + strandat 1883.347 kb on + strandat 1883.355 kb on - strandat 1883.355 kb on - strandat 1883.360 kb on - strandat 1883.377 kb on - strandat 1883.377 kb on - strandat 1883.451 kb on + strand, within CSW01_08785at 1883.511 kb on - strand, within CSW01_08785at 1883.537 kb on + strand, within CSW01_08785at 1883.539 kb on - strand, within CSW01_08785at 1883.595 kb on + strand, within CSW01_08785at 1883.595 kb on + strand, within CSW01_08785at 1883.603 kb on - strand, within CSW01_08785at 1883.633 kb on + strand, within CSW01_08785at 1883.662 kb on + strand, within CSW01_08785at 1883.744 kb on + strand, within CSW01_08785at 1883.752 kb on - strand, within CSW01_08785at 1883.752 kb on - strand, within CSW01_08785at 1883.827 kb on + strand, within CSW01_08785at 1883.828 kb on + strand, within CSW01_08785at 1883.829 kb on - strand, within CSW01_08785at 1883.892 kb on + strand, within CSW01_08785at 1883.933 kb on - strand, within CSW01_08785at 1884.009 kb on + strand, within CSW01_08785at 1884.009 kb on + strand, within CSW01_08785at 1884.009 kb on + strand, within CSW01_08785at 1884.050 kb on + strand, within CSW01_08785at 1884.082 kb on - strand, within CSW01_08785at 1884.104 kb on - strand, within CSW01_08785at 1884.104 kb on - strand, within CSW01_08785at 1884.135 kb on - strand, within CSW01_08785at 1884.141 kb on + strand, within CSW01_08785at 1884.149 kb on - strand, within CSW01_08785at 1884.282 kb on + strand, within CSW01_08785at 1884.282 kb on + strand, within CSW01_08785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
remove
1,881,214 + CSW01_08770 0.80 -1.7
1,881,294 + +1.9
1,881,319 + +0.1
1,881,319 + +2.5
1,881,384 + -0.4
1,881,392 - +1.4
1,881,465 + CSW01_08775 0.16 -1.3
1,881,473 - CSW01_08775 0.17 -0.1
1,881,602 + CSW01_08775 0.32 +1.7
1,881,634 - CSW01_08775 0.36 -0.2
1,881,643 - CSW01_08775 0.37 -0.0
1,881,669 - CSW01_08775 0.40 +0.3
1,881,695 + CSW01_08775 0.44 +1.1
1,881,703 - CSW01_08775 0.45 -0.2
1,881,748 + CSW01_08775 0.50 -0.3
1,881,763 + CSW01_08775 0.52 +0.3
1,881,771 - CSW01_08775 0.53 -1.3
1,881,778 + CSW01_08775 0.54 +0.3
1,881,798 + CSW01_08775 0.56 -0.0
1,881,827 - CSW01_08775 0.60 -0.8
1,881,840 + CSW01_08775 0.61 -1.0
1,881,848 - CSW01_08775 0.62 +0.1
1,881,872 + CSW01_08775 0.65 +0.0
1,881,992 + CSW01_08775 0.80 +1.0
1,882,094 - -0.1
1,882,144 + +0.3
1,882,152 - +0.5
1,882,355 - CSW01_08780 0.24 -0.3
1,882,355 - CSW01_08780 0.24 +0.7
1,882,383 - CSW01_08780 0.26 -0.4
1,882,412 + CSW01_08780 0.29 +0.0
1,882,521 + CSW01_08780 0.38 -0.3
1,882,531 + CSW01_08780 0.38 +0.6
1,882,531 + CSW01_08780 0.38 +0.6
1,882,619 + CSW01_08780 0.46 -0.5
1,882,644 - CSW01_08780 0.48 -0.2
1,882,741 - CSW01_08780 0.56 -1.2
1,882,773 + CSW01_08780 0.58 -0.5
1,882,781 - CSW01_08780 0.59 -0.7
1,882,781 - CSW01_08780 0.59 -0.4
1,882,884 + CSW01_08780 0.67 +0.8
1,882,950 - CSW01_08780 0.73 +0.1
1,882,970 + CSW01_08780 0.74 +0.1
1,883,048 + CSW01_08780 0.81 -0.8
1,883,061 - CSW01_08780 0.82 -1.5
1,883,103 + CSW01_08780 0.85 -0.9
1,883,117 - CSW01_08780 0.86 +0.8
1,883,311 + -2.5
1,883,311 + +0.0
1,883,347 + -0.5
1,883,347 + -1.1
1,883,355 - -0.1
1,883,355 - -1.7
1,883,360 - -0.3
1,883,377 - -1.6
1,883,377 - +0.4
1,883,451 + CSW01_08785 0.14 -0.2
1,883,511 - CSW01_08785 0.19 -0.4
1,883,537 + CSW01_08785 0.21 -0.1
1,883,539 - CSW01_08785 0.22 +0.1
1,883,595 + CSW01_08785 0.27 -1.4
1,883,595 + CSW01_08785 0.27 -0.4
1,883,603 - CSW01_08785 0.27 +0.4
1,883,633 + CSW01_08785 0.30 -0.0
1,883,662 + CSW01_08785 0.33 +0.3
1,883,744 + CSW01_08785 0.40 -0.3
1,883,752 - CSW01_08785 0.41 -0.4
1,883,752 - CSW01_08785 0.41 -0.7
1,883,827 + CSW01_08785 0.47 -0.2
1,883,828 + CSW01_08785 0.47 -0.2
1,883,829 - CSW01_08785 0.48 -0.8
1,883,892 + CSW01_08785 0.53 -0.3
1,883,933 - CSW01_08785 0.57 -2.4
1,884,009 + CSW01_08785 0.64 -0.2
1,884,009 + CSW01_08785 0.64 +0.6
1,884,009 + CSW01_08785 0.64 -1.1
1,884,050 + CSW01_08785 0.67 +0.8
1,884,082 - CSW01_08785 0.70 -0.8
1,884,104 - CSW01_08785 0.72 -1.4
1,884,104 - CSW01_08785 0.72 +0.7
1,884,135 - CSW01_08785 0.75 -1.3
1,884,141 + CSW01_08785 0.75 -0.8
1,884,149 - CSW01_08785 0.76 -0.8
1,884,282 + CSW01_08785 0.88 -0.6
1,884,282 + CSW01_08785 0.88 +0.6

Or see this region's nucleotide sequence