Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_06265 and CSW01_06270 are separated by 8 nucleotides CSW01_06270 and CSW01_06275 are separated by 6 nucleotides CSW01_06275 and CSW01_06280 are separated by 315 nucleotides
CSW01_06265: CSW01_06265 - adenosylcobinamide-GDP ribazoletransferase, at 1,311,302 to 1,312,087
_06265
CSW01_06270: CSW01_06270 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 1,312,096 to 1,312,635
_06270
CSW01_06275: CSW01_06275 - alpha-ribazole phosphatase, at 1,312,642 to 1,313,244
_06275
CSW01_06280: CSW01_06280 - succinylglutamate desuccinylase, at 1,313,560 to 1,314,588
_06280
Position (kb)
1312
1313
1314 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1311.755 kb on - strand, within CSW01_06265 at 1311.760 kb on - strand, within CSW01_06265 at 1311.871 kb on - strand, within CSW01_06265 at 1311.875 kb on - strand, within CSW01_06265 at 1311.895 kb on + strand, within CSW01_06265 at 1312.016 kb on + strand at 1312.150 kb on + strand, within CSW01_06270 at 1312.179 kb on - strand, within CSW01_06270 at 1312.216 kb on + strand, within CSW01_06270 at 1312.268 kb on + strand, within CSW01_06270 at 1312.299 kb on + strand, within CSW01_06270 at 1312.307 kb on - strand, within CSW01_06270 at 1312.344 kb on - strand, within CSW01_06270 at 1312.401 kb on + strand, within CSW01_06270 at 1312.406 kb on + strand, within CSW01_06270 at 1312.409 kb on - strand, within CSW01_06270 at 1312.414 kb on - strand, within CSW01_06270 at 1312.415 kb on + strand, within CSW01_06270 at 1312.502 kb on - strand, within CSW01_06270 at 1312.685 kb on + strand at 1312.708 kb on - strand, within CSW01_06275 at 1312.874 kb on - strand, within CSW01_06275 at 1312.875 kb on + strand, within CSW01_06275 at 1312.880 kb on + strand, within CSW01_06275 at 1312.905 kb on - strand, within CSW01_06275 at 1312.973 kb on - strand, within CSW01_06275 at 1312.982 kb on - strand, within CSW01_06275 at 1313.065 kb on - strand, within CSW01_06275 at 1313.121 kb on + strand, within CSW01_06275 at 1313.127 kb on + strand, within CSW01_06275 at 1313.135 kb on + strand, within CSW01_06275 at 1313.182 kb on - strand, within CSW01_06275 at 1313.550 kb on + strand at 1313.600 kb on + strand at 1313.600 kb on + strand at 1313.624 kb on - strand at 1313.639 kb on + strand at 1313.649 kb on + strand at 1313.652 kb on - strand at 1313.657 kb on + strand at 1313.665 kb on - strand, within CSW01_06280 at 1313.677 kb on + strand, within CSW01_06280 at 1313.706 kb on - strand, within CSW01_06280 at 1313.839 kb on - strand, within CSW01_06280 at 1313.858 kb on - strand, within CSW01_06280 at 1313.924 kb on - strand, within CSW01_06280 at 1313.955 kb on + strand, within CSW01_06280 at 1313.955 kb on + strand, within CSW01_06280 at 1313.962 kb on + strand, within CSW01_06280 at 1313.963 kb on - strand, within CSW01_06280 at 1314.000 kb on - strand, within CSW01_06280 at 1314.034 kb on - strand, within CSW01_06280 at 1314.092 kb on + strand, within CSW01_06280 at 1314.100 kb on - strand, within CSW01_06280 at 1314.100 kb on - strand, within CSW01_06280 at 1314.100 kb on - strand, within CSW01_06280 at 1314.186 kb on + strand, within CSW01_06280 at 1314.186 kb on + strand, within CSW01_06280 at 1314.196 kb on + strand, within CSW01_06280
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B remove 1,311,755 - CSW01_06265 0.58 -0.5 1,311,760 - CSW01_06265 0.58 -2.0 1,311,871 - CSW01_06265 0.72 +1.5 1,311,875 - CSW01_06265 0.73 +0.8 1,311,895 + CSW01_06265 0.75 +0.8 1,312,016 + +0.2 1,312,150 + CSW01_06270 0.10 +0.3 1,312,179 - CSW01_06270 0.15 +0.7 1,312,216 + CSW01_06270 0.22 +0.2 1,312,268 + CSW01_06270 0.32 +2.2 1,312,299 + CSW01_06270 0.38 +0.0 1,312,307 - CSW01_06270 0.39 -0.1 1,312,344 - CSW01_06270 0.46 -1.7 1,312,401 + CSW01_06270 0.56 +1.6 1,312,406 + CSW01_06270 0.57 +0.3 1,312,409 - CSW01_06270 0.58 -0.1 1,312,414 - CSW01_06270 0.59 +1.7 1,312,415 + CSW01_06270 0.59 -0.5 1,312,502 - CSW01_06270 0.75 +0.7 1,312,685 + +0.6 1,312,708 - CSW01_06275 0.11 -0.3 1,312,874 - CSW01_06275 0.38 +0.1 1,312,875 + CSW01_06275 0.39 -0.4 1,312,880 + CSW01_06275 0.39 -0.1 1,312,905 - CSW01_06275 0.44 -0.2 1,312,973 - CSW01_06275 0.55 +0.5 1,312,982 - CSW01_06275 0.56 -0.0 1,313,065 - CSW01_06275 0.70 +0.6 1,313,121 + CSW01_06275 0.79 -0.3 1,313,127 + CSW01_06275 0.80 -0.1 1,313,135 + CSW01_06275 0.82 +0.1 1,313,182 - CSW01_06275 0.90 -3.7 1,313,550 + -0.5 1,313,600 + -0.8 1,313,600 + -0.3 1,313,624 - -0.3 1,313,639 + +1.2 1,313,649 + +1.9 1,313,652 - +0.4 1,313,657 + -1.4 1,313,665 - CSW01_06280 0.10 +0.7 1,313,677 + CSW01_06280 0.11 +0.5 1,313,706 - CSW01_06280 0.14 -0.5 1,313,839 - CSW01_06280 0.27 +1.6 1,313,858 - CSW01_06280 0.29 -0.3 1,313,924 - CSW01_06280 0.35 +0.0 1,313,955 + CSW01_06280 0.38 +0.5 1,313,955 + CSW01_06280 0.38 +1.3 1,313,962 + CSW01_06280 0.39 +1.5 1,313,963 - CSW01_06280 0.39 -0.3 1,314,000 - CSW01_06280 0.43 -1.2 1,314,034 - CSW01_06280 0.46 -0.8 1,314,092 + CSW01_06280 0.52 -0.5 1,314,100 - CSW01_06280 0.52 +1.8 1,314,100 - CSW01_06280 0.52 -0.8 1,314,100 - CSW01_06280 0.52 +1.0 1,314,186 + CSW01_06280 0.61 -1.3 1,314,186 + CSW01_06280 0.61 -0.3 1,314,196 + CSW01_06280 0.62 +0.5
Or see this region's nucleotide sequence