Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04785

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04780 and CSW01_04785 are separated by 489 nucleotidesCSW01_04785 and CSW01_04790 are separated by 70 nucleotides CSW01_04780: CSW01_04780 - hypothetical protein, at 996,887 to 997,492 _04780 CSW01_04785: CSW01_04785 - undecaprenyl-phosphate glucose phosphotransferase, at 997,982 to 999,379 _04785 CSW01_04790: CSW01_04790 - TetR family transcriptional regulator, at 999,450 to 1,000,646 _04790 Position (kb) 997 998 999 1000Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 997.004 kb on + strand, within CSW01_04780at 997.131 kb on + strand, within CSW01_04780at 997.164 kb on + strand, within CSW01_04780at 997.167 kb on - strand, within CSW01_04780at 997.172 kb on - strand, within CSW01_04780at 997.174 kb on - strand, within CSW01_04780at 997.255 kb on + strand, within CSW01_04780at 997.255 kb on + strand, within CSW01_04780at 997.255 kb on + strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.299 kb on + strand, within CSW01_04780at 997.336 kb on + strand, within CSW01_04780at 997.336 kb on + strand, within CSW01_04780at 997.336 kb on + strand, within CSW01_04780at 997.344 kb on - strand, within CSW01_04780at 997.359 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.369 kb on - strand, within CSW01_04780at 997.369 kb on - strand, within CSW01_04780at 997.370 kb on + strand, within CSW01_04780at 997.373 kb on + strand, within CSW01_04780at 997.375 kb on + strand, within CSW01_04780at 997.375 kb on + strand, within CSW01_04780at 997.375 kb on + strand, within CSW01_04780at 997.375 kb on + strand, within CSW01_04780at 997.377 kb on + strand, within CSW01_04780at 997.377 kb on + strand, within CSW01_04780at 997.377 kb on + strand, within CSW01_04780at 997.377 kb on + strand, within CSW01_04780at 997.378 kb on - strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.383 kb on + strand, within CSW01_04780at 997.383 kb on - strand, within CSW01_04780at 997.390 kb on - strand, within CSW01_04780at 997.390 kb on - strand, within CSW01_04780at 997.400 kb on - strand, within CSW01_04780at 997.400 kb on - strand, within CSW01_04780at 997.401 kb on - strand, within CSW01_04780at 997.460 kb on + strandat 997.463 kb on - strandat 997.468 kb on - strandat 997.479 kb on + strandat 997.567 kb on - strandat 997.809 kb on + strandat 997.967 kb on + strandat 997.967 kb on + strandat 997.967 kb on + strandat 997.975 kb on - strandat 997.975 kb on - strandat 997.975 kb on - strandat 997.975 kb on - strandat 997.977 kb on + strandat 997.977 kb on + strandat 998.088 kb on + strandat 998.110 kb on - strandat 998.177 kb on - strand, within CSW01_04785at 998.184 kb on - strand, within CSW01_04785at 998.187 kb on - strand, within CSW01_04785at 998.194 kb on - strand, within CSW01_04785at 998.206 kb on - strand, within CSW01_04785at 998.233 kb on + strand, within CSW01_04785at 998.233 kb on + strand, within CSW01_04785at 998.233 kb on + strand, within CSW01_04785at 998.241 kb on - strand, within CSW01_04785at 998.241 kb on - strand, within CSW01_04785at 998.255 kb on + strand, within CSW01_04785at 998.255 kb on + strand, within CSW01_04785at 998.255 kb on + strand, within CSW01_04785at 998.263 kb on - strand, within CSW01_04785at 998.263 kb on - strand, within CSW01_04785at 998.263 kb on - strand, within CSW01_04785at 998.269 kb on + strand, within CSW01_04785at 998.344 kb on + strand, within CSW01_04785at 998.444 kb on + strand, within CSW01_04785at 998.446 kb on - strand, within CSW01_04785at 998.549 kb on + strand, within CSW01_04785at 998.552 kb on - strand, within CSW01_04785at 998.557 kb on - strand, within CSW01_04785at 998.562 kb on - strand, within CSW01_04785at 998.570 kb on + strand, within CSW01_04785at 998.570 kb on + strand, within CSW01_04785at 998.570 kb on + strand, within CSW01_04785at 998.578 kb on - strand, within CSW01_04785at 998.578 kb on - strand, within CSW01_04785at 998.578 kb on - strand, within CSW01_04785at 998.578 kb on - strand, within CSW01_04785at 998.578 kb on - strand, within CSW01_04785at 998.578 kb on - strand, within CSW01_04785at 998.589 kb on - strand, within CSW01_04785at 998.693 kb on - strand, within CSW01_04785at 998.730 kb on - strand, within CSW01_04785at 998.737 kb on - strand, within CSW01_04785at 998.787 kb on - strand, within CSW01_04785at 998.791 kb on + strand, within CSW01_04785at 998.801 kb on + strand, within CSW01_04785at 998.822 kb on + strand, within CSW01_04785at 998.830 kb on - strand, within CSW01_04785at 998.830 kb on - strand, within CSW01_04785at 998.848 kb on + strand, within CSW01_04785at 998.858 kb on + strand, within CSW01_04785at 998.861 kb on - strand, within CSW01_04785at 998.861 kb on - strand, within CSW01_04785at 998.866 kb on - strand, within CSW01_04785at 998.880 kb on + strand, within CSW01_04785at 998.880 kb on + strand, within CSW01_04785at 998.888 kb on - strand, within CSW01_04785at 998.890 kb on + strand, within CSW01_04785at 998.978 kb on - strand, within CSW01_04785at 998.996 kb on + strand, within CSW01_04785at 999.057 kb on + strand, within CSW01_04785at 999.065 kb on + strand, within CSW01_04785at 999.174 kb on + strand, within CSW01_04785at 999.223 kb on + strand, within CSW01_04785at 999.223 kb on + strand, within CSW01_04785at 999.223 kb on + strand, within CSW01_04785at 999.231 kb on - strand, within CSW01_04785at 999.292 kb on - strandat 999.382 kb on - strandat 999.382 kb on - strandat 999.382 kb on - strandat 999.469 kb on + strandat 999.500 kb on + strandat 999.508 kb on - strandat 999.508 kb on - strandat 999.508 kb on - strandat 999.508 kb on - strandat 999.516 kb on + strandat 999.518 kb on + strandat 999.524 kb on - strandat 999.745 kb on - strand, within CSW01_04790at 999.775 kb on + strand, within CSW01_04790at 999.775 kb on + strand, within CSW01_04790at 999.775 kb on + strand, within CSW01_04790at 999.783 kb on - strand, within CSW01_04790at 999.783 kb on - strand, within CSW01_04790at 999.783 kb on - strand, within CSW01_04790at 999.836 kb on - strand, within CSW01_04790at 999.840 kb on + strand, within CSW01_04790at 999.840 kb on + strand, within CSW01_04790at 999.856 kb on + strand, within CSW01_04790at 999.861 kb on + strand, within CSW01_04790at 999.869 kb on + strand, within CSW01_04790at 1000.017 kb on - strand, within CSW01_04790at 1000.033 kb on - strand, within CSW01_04790at 1000.051 kb on - strand, within CSW01_04790at 1000.117 kb on + strand, within CSW01_04790at 1000.125 kb on - strand, within CSW01_04790at 1000.208 kb on - strand, within CSW01_04790at 1000.224 kb on - strand, within CSW01_04790at 1000.300 kb on + strand, within CSW01_04790at 1000.313 kb on + strand, within CSW01_04790at 1000.313 kb on + strand, within CSW01_04790at 1000.321 kb on - strand, within CSW01_04790at 1000.321 kb on - strand, within CSW01_04790

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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997,004 + CSW01_04780 0.19 +0.2
997,131 + CSW01_04780 0.40 +0.1
997,164 + CSW01_04780 0.46 +1.3
997,167 - CSW01_04780 0.46 +0.2
997,172 - CSW01_04780 0.47 -0.4
997,174 - CSW01_04780 0.47 -0.1
997,255 + CSW01_04780 0.61 +0.9
997,255 + CSW01_04780 0.61 +0.4
997,255 + CSW01_04780 0.61 +0.4
997,263 - CSW01_04780 0.62 -0.7
997,263 - CSW01_04780 0.62 -0.7
997,263 - CSW01_04780 0.62 -0.1
997,263 - CSW01_04780 0.62 -0.5
997,263 - CSW01_04780 0.62 -0.6
997,263 - CSW01_04780 0.62 -0.6
997,263 - CSW01_04780 0.62 +0.5
997,299 + CSW01_04780 0.68 -0.2
997,336 + CSW01_04780 0.74 -3.6
997,336 + CSW01_04780 0.74 -0.2
997,336 + CSW01_04780 0.74 +0.6
997,344 - CSW01_04780 0.75 +1.0
997,359 + CSW01_04780 0.78 -0.1
997,361 + CSW01_04780 0.78 -0.0
997,361 + CSW01_04780 0.78 -0.1
997,361 + CSW01_04780 0.78 +0.4
997,361 + CSW01_04780 0.78 +0.5
997,361 + CSW01_04780 0.78 +0.1
997,369 - CSW01_04780 0.80 -1.0
997,369 - CSW01_04780 0.80 +0.2
997,370 + CSW01_04780 0.80 +0.4
997,373 + CSW01_04780 0.80 -0.4
997,375 + CSW01_04780 0.81 +1.5
997,375 + CSW01_04780 0.81 +0.0
997,375 + CSW01_04780 0.81 -1.2
997,375 + CSW01_04780 0.81 -0.1
997,377 + CSW01_04780 0.81 +0.2
997,377 + CSW01_04780 0.81 -0.0
997,377 + CSW01_04780 0.81 -0.2
997,377 + CSW01_04780 0.81 +0.4
997,378 - CSW01_04780 0.81 +0.6
997,382 + CSW01_04780 0.82 +0.2
997,382 + CSW01_04780 0.82 -0.1
997,382 + CSW01_04780 0.82 +1.4
997,382 + CSW01_04780 0.82 +0.2
997,382 + CSW01_04780 0.82 +0.1
997,382 + CSW01_04780 0.82 +0.3
997,382 + CSW01_04780 0.82 -0.2
997,382 + CSW01_04780 0.82 +0.1
997,383 + CSW01_04780 0.82 -0.4
997,383 - CSW01_04780 0.82 +0.1
997,390 - CSW01_04780 0.83 +1.9
997,390 - CSW01_04780 0.83 +0.5
997,400 - CSW01_04780 0.85 -0.2
997,400 - CSW01_04780 0.85 -0.1
997,401 - CSW01_04780 0.85 -0.6
997,460 + +0.0
997,463 - -0.1
997,468 - -0.6
997,479 + +0.1
997,567 - +0.1
997,809 + -0.1
997,967 + -0.5
997,967 + -0.6
997,967 + -1.9
997,975 - +1.0
997,975 - +0.4
997,975 - -0.7
997,975 - +0.7
997,977 + +0.1
997,977 + -0.1
998,088 + -0.6
998,110 - -0.1
998,177 - CSW01_04785 0.14 +0.5
998,184 - CSW01_04785 0.14 -0.3
998,187 - CSW01_04785 0.15 -0.3
998,194 - CSW01_04785 0.15 -1.0
998,206 - CSW01_04785 0.16 +0.0
998,233 + CSW01_04785 0.18 -0.6
998,233 + CSW01_04785 0.18 +1.2
998,233 + CSW01_04785 0.18 -0.7
998,241 - CSW01_04785 0.19 +0.4
998,241 - CSW01_04785 0.19 +1.1
998,255 + CSW01_04785 0.20 -0.3
998,255 + CSW01_04785 0.20 +0.2
998,255 + CSW01_04785 0.20 +0.2
998,263 - CSW01_04785 0.20 +0.9
998,263 - CSW01_04785 0.20 -0.1
998,263 - CSW01_04785 0.20 -1.0
998,269 + CSW01_04785 0.21 +1.5
998,344 + CSW01_04785 0.26 -0.1
998,444 + CSW01_04785 0.33 +0.5
998,446 - CSW01_04785 0.33 -1.1
998,549 + CSW01_04785 0.41 -0.9
998,552 - CSW01_04785 0.41 +0.5
998,557 - CSW01_04785 0.41 +0.3
998,562 - CSW01_04785 0.41 -0.2
998,570 + CSW01_04785 0.42 +0.2
998,570 + CSW01_04785 0.42 +0.4
998,570 + CSW01_04785 0.42 +0.3
998,578 - CSW01_04785 0.43 -0.0
998,578 - CSW01_04785 0.43 -0.0
998,578 - CSW01_04785 0.43 -0.4
998,578 - CSW01_04785 0.43 -1.5
998,578 - CSW01_04785 0.43 +0.3
998,578 - CSW01_04785 0.43 +0.5
998,589 - CSW01_04785 0.43 -0.1
998,693 - CSW01_04785 0.51 -1.9
998,730 - CSW01_04785 0.54 +0.8
998,737 - CSW01_04785 0.54 +0.2
998,787 - CSW01_04785 0.58 +0.1
998,791 + CSW01_04785 0.58 -1.5
998,801 + CSW01_04785 0.59 +1.3
998,822 + CSW01_04785 0.60 -0.2
998,830 - CSW01_04785 0.61 +0.0
998,830 - CSW01_04785 0.61 +0.5
998,848 + CSW01_04785 0.62 +1.1
998,858 + CSW01_04785 0.63 +0.6
998,861 - CSW01_04785 0.63 +1.9
998,861 - CSW01_04785 0.63 +0.4
998,866 - CSW01_04785 0.63 +0.1
998,880 + CSW01_04785 0.64 -0.1
998,880 + CSW01_04785 0.64 -1.2
998,888 - CSW01_04785 0.65 -0.2
998,890 + CSW01_04785 0.65 +0.3
998,978 - CSW01_04785 0.71 -1.1
998,996 + CSW01_04785 0.73 +0.5
999,057 + CSW01_04785 0.77 -0.1
999,065 + CSW01_04785 0.77 +0.9
999,174 + CSW01_04785 0.85 -1.2
999,223 + CSW01_04785 0.89 -0.5
999,223 + CSW01_04785 0.89 -0.5
999,223 + CSW01_04785 0.89 -1.1
999,231 - CSW01_04785 0.89 -0.1
999,292 - +0.5
999,382 - +0.0
999,382 - +0.3
999,382 - +0.3
999,469 + +0.9
999,500 + -2.0
999,508 - -0.5
999,508 - +0.6
999,508 - -0.2
999,508 - +0.5
999,516 + -0.7
999,518 + -0.9
999,524 - -0.4
999,745 - CSW01_04790 0.25 +0.6
999,775 + CSW01_04790 0.27 -0.5
999,775 + CSW01_04790 0.27 +0.8
999,775 + CSW01_04790 0.27 +0.4
999,783 - CSW01_04790 0.28 -0.3
999,783 - CSW01_04790 0.28 +0.5
999,783 - CSW01_04790 0.28 -0.4
999,836 - CSW01_04790 0.32 +1.4
999,840 + CSW01_04790 0.33 +1.2
999,840 + CSW01_04790 0.33 -0.2
999,856 + CSW01_04790 0.34 +0.3
999,861 + CSW01_04790 0.34 +0.7
999,869 + CSW01_04790 0.35 -0.2
1,000,017 - CSW01_04790 0.47 -0.2
1,000,033 - CSW01_04790 0.49 -0.3
1,000,051 - CSW01_04790 0.50 -1.1
1,000,117 + CSW01_04790 0.56 -0.1
1,000,125 - CSW01_04790 0.56 -0.7
1,000,208 - CSW01_04790 0.63 -0.5
1,000,224 - CSW01_04790 0.65 +0.5
1,000,300 + CSW01_04790 0.71 +0.5
1,000,313 + CSW01_04790 0.72 -0.0
1,000,313 + CSW01_04790 0.72 -1.2
1,000,321 - CSW01_04790 0.73 -0.8
1,000,321 - CSW01_04790 0.73 -0.2

Or see this region's nucleotide sequence