Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04295

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04285 and CSW01_04290 overlap by 13 nucleotidesCSW01_04290 and CSW01_04295 are separated by 15 nucleotidesCSW01_04295 and CSW01_04300 overlap by 11 nucleotides CSW01_04285: CSW01_04285 - toxin coregulated pilus biosynthesis protein R, at 893,151 to 893,606 _04285 CSW01_04290: CSW01_04290 - toxin coregulated pilus biosynthesis protein D, at 893,594 to 894,430 _04290 CSW01_04295: CSW01_04295 - toxin coregulated pilus biosynthesis protein S, at 894,446 to 894,904 _04295 CSW01_04300: CSW01_04300 - toxin coregulated pilus biosynthesis protein T, at 894,894 to 896,405 _04300 Position (kb) 894 895Strain fitness (log2 ratio) -2 -1 0 1 2at 893.462 kb on + strand, within CSW01_04285at 893.462 kb on + strand, within CSW01_04285at 893.470 kb on - strand, within CSW01_04285at 893.508 kb on - strand, within CSW01_04285at 893.514 kb on - strand, within CSW01_04285at 893.630 kb on - strandat 893.723 kb on + strand, within CSW01_04290at 893.740 kb on - strand, within CSW01_04290at 893.764 kb on + strand, within CSW01_04290at 893.805 kb on + strand, within CSW01_04290at 893.805 kb on - strand, within CSW01_04290at 893.849 kb on + strand, within CSW01_04290at 893.857 kb on - strand, within CSW01_04290at 893.872 kb on - strand, within CSW01_04290at 893.887 kb on + strand, within CSW01_04290at 893.887 kb on + strand, within CSW01_04290at 893.887 kb on + strand, within CSW01_04290at 893.887 kb on + strand, within CSW01_04290at 893.887 kb on + strand, within CSW01_04290at 893.887 kb on + strand, within CSW01_04290at 893.887 kb on + strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.895 kb on - strand, within CSW01_04290at 893.943 kb on + strand, within CSW01_04290at 893.943 kb on + strand, within CSW01_04290at 893.944 kb on + strand, within CSW01_04290at 893.952 kb on - strand, within CSW01_04290at 893.991 kb on + strand, within CSW01_04290at 893.999 kb on - strand, within CSW01_04290at 894.016 kb on + strand, within CSW01_04290at 894.026 kb on + strand, within CSW01_04290at 894.062 kb on - strand, within CSW01_04290at 894.119 kb on + strand, within CSW01_04290at 894.123 kb on - strand, within CSW01_04290at 894.127 kb on - strand, within CSW01_04290at 894.147 kb on + strand, within CSW01_04290at 894.157 kb on + strand, within CSW01_04290at 894.157 kb on + strand, within CSW01_04290at 894.165 kb on - strand, within CSW01_04290at 894.257 kb on + strand, within CSW01_04290at 894.257 kb on + strand, within CSW01_04290at 894.265 kb on - strand, within CSW01_04290at 894.265 kb on - strand, within CSW01_04290at 894.372 kb on + strandat 894.373 kb on + strandat 894.381 kb on - strandat 894.535 kb on + strand, within CSW01_04295at 894.535 kb on + strand, within CSW01_04295at 894.594 kb on + strand, within CSW01_04295at 894.621 kb on + strand, within CSW01_04295at 894.646 kb on + strand, within CSW01_04295at 894.663 kb on - strand, within CSW01_04295at 894.671 kb on - strand, within CSW01_04295at 894.673 kb on - strand, within CSW01_04295at 894.721 kb on - strand, within CSW01_04295at 894.811 kb on + strand, within CSW01_04295at 894.811 kb on + strand, within CSW01_04295at 894.811 kb on + strand, within CSW01_04295at 894.927 kb on + strandat 894.935 kb on - strandat 894.935 kb on - strandat 894.935 kb on - strandat 894.936 kb on + strandat 894.990 kb on + strandat 894.992 kb on + strandat 894.999 kb on + strandat 895.007 kb on - strandat 895.137 kb on + strand, within CSW01_04300at 895.137 kb on + strand, within CSW01_04300at 895.145 kb on - strand, within CSW01_04300at 895.145 kb on - strand, within CSW01_04300at 895.182 kb on + strand, within CSW01_04300at 895.182 kb on + strand, within CSW01_04300at 895.187 kb on + strand, within CSW01_04300at 895.188 kb on + strand, within CSW01_04300at 895.195 kb on + strand, within CSW01_04300at 895.195 kb on - strand, within CSW01_04300at 895.195 kb on - strand, within CSW01_04300at 895.200 kb on + strand, within CSW01_04300at 895.201 kb on + strand, within CSW01_04300at 895.203 kb on - strand, within CSW01_04300at 895.208 kb on - strand, within CSW01_04300at 895.209 kb on + strand, within CSW01_04300at 895.209 kb on + strand, within CSW01_04300at 895.213 kb on - strand, within CSW01_04300at 895.213 kb on - strand, within CSW01_04300at 895.214 kb on + strand, within CSW01_04300at 895.217 kb on - strand, within CSW01_04300at 895.231 kb on - strand, within CSW01_04300at 895.271 kb on - strand, within CSW01_04300at 895.309 kb on + strand, within CSW01_04300at 895.314 kb on + strand, within CSW01_04300at 895.314 kb on + strand, within CSW01_04300at 895.317 kb on - strand, within CSW01_04300at 895.319 kb on + strand, within CSW01_04300at 895.322 kb on - strand, within CSW01_04300at 895.322 kb on - strand, within CSW01_04300at 895.322 kb on - strand, within CSW01_04300at 895.327 kb on - strand, within CSW01_04300at 895.328 kb on + strand, within CSW01_04300at 895.344 kb on - strand, within CSW01_04300at 895.350 kb on + strand, within CSW01_04300at 895.406 kb on + strand, within CSW01_04300at 895.436 kb on - strand, within CSW01_04300at 895.460 kb on - strand, within CSW01_04300at 895.473 kb on - strand, within CSW01_04300at 895.527 kb on + strand, within CSW01_04300at 895.527 kb on + strand, within CSW01_04300at 895.528 kb on + strand, within CSW01_04300at 895.528 kb on + strand, within CSW01_04300at 895.532 kb on + strand, within CSW01_04300at 895.535 kb on - strand, within CSW01_04300at 895.535 kb on - strand, within CSW01_04300at 895.551 kb on - strand, within CSW01_04300at 895.627 kb on - strand, within CSW01_04300at 895.690 kb on + strand, within CSW01_04300at 895.690 kb on + strand, within CSW01_04300at 895.728 kb on + strand, within CSW01_04300at 895.728 kb on + strand, within CSW01_04300at 895.728 kb on + strand, within CSW01_04300at 895.735 kb on + strand, within CSW01_04300at 895.736 kb on - strand, within CSW01_04300at 895.782 kb on - strand, within CSW01_04300at 895.792 kb on + strand, within CSW01_04300at 895.792 kb on + strand, within CSW01_04300at 895.792 kb on + strand, within CSW01_04300at 895.792 kb on + strand, within CSW01_04300at 895.792 kb on + strand, within CSW01_04300at 895.797 kb on + strand, within CSW01_04300at 895.798 kb on - strand, within CSW01_04300at 895.800 kb on - strand, within CSW01_04300at 895.804 kb on + strand, within CSW01_04300at 895.804 kb on + strand, within CSW01_04300at 895.812 kb on - strand, within CSW01_04300at 895.847 kb on + strand, within CSW01_04300at 895.847 kb on + strand, within CSW01_04300at 895.860 kb on - strand, within CSW01_04300at 895.865 kb on + strand, within CSW01_04300at 895.868 kb on - strand, within CSW01_04300at 895.871 kb on - strand, within CSW01_04300at 895.871 kb on - strand, within CSW01_04300at 895.873 kb on - strand, within CSW01_04300at 895.873 kb on - strand, within CSW01_04300at 895.878 kb on - strand, within CSW01_04300at 895.883 kb on - strand, within CSW01_04300at 895.889 kb on + strand, within CSW01_04300at 895.889 kb on + strand, within CSW01_04300at 895.895 kb on + strand, within CSW01_04300at 895.897 kb on - strand, within CSW01_04300at 895.897 kb on - strand, within CSW01_04300at 895.897 kb on - strand, within CSW01_04300at 895.903 kb on - strand, within CSW01_04300

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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893,462 + CSW01_04285 0.68 +0.5
893,462 + CSW01_04285 0.68 -0.3
893,470 - CSW01_04285 0.70 -0.4
893,508 - CSW01_04285 0.78 +1.8
893,514 - CSW01_04285 0.80 -0.1
893,630 - -1.2
893,723 + CSW01_04290 0.15 -0.7
893,740 - CSW01_04290 0.17 +0.6
893,764 + CSW01_04290 0.20 -0.5
893,805 + CSW01_04290 0.25 +0.4
893,805 - CSW01_04290 0.25 +0.6
893,849 + CSW01_04290 0.30 +1.0
893,857 - CSW01_04290 0.31 +0.1
893,872 - CSW01_04290 0.33 -0.1
893,887 + CSW01_04290 0.35 +0.1
893,887 + CSW01_04290 0.35 -0.8
893,887 + CSW01_04290 0.35 +0.5
893,887 + CSW01_04290 0.35 -0.5
893,887 + CSW01_04290 0.35 +0.8
893,887 + CSW01_04290 0.35 +0.0
893,887 + CSW01_04290 0.35 -0.0
893,895 - CSW01_04290 0.36 -0.3
893,895 - CSW01_04290 0.36 +0.4
893,895 - CSW01_04290 0.36 -0.2
893,895 - CSW01_04290 0.36 -0.6
893,895 - CSW01_04290 0.36 -0.4
893,895 - CSW01_04290 0.36 -1.2
893,895 - CSW01_04290 0.36 -1.3
893,895 - CSW01_04290 0.36 +1.1
893,895 - CSW01_04290 0.36 -0.7
893,895 - CSW01_04290 0.36 -0.7
893,895 - CSW01_04290 0.36 -0.0
893,895 - CSW01_04290 0.36 -2.0
893,895 - CSW01_04290 0.36 +0.3
893,943 + CSW01_04290 0.42 +0.2
893,943 + CSW01_04290 0.42 +0.7
893,944 + CSW01_04290 0.42 -0.6
893,952 - CSW01_04290 0.43 +1.5
893,991 + CSW01_04290 0.47 -0.2
893,999 - CSW01_04290 0.48 +0.2
894,016 + CSW01_04290 0.50 +1.0
894,026 + CSW01_04290 0.52 +1.6
894,062 - CSW01_04290 0.56 +0.9
894,119 + CSW01_04290 0.63 -1.1
894,123 - CSW01_04290 0.63 -0.9
894,127 - CSW01_04290 0.64 -1.6
894,147 + CSW01_04290 0.66 +0.8
894,157 + CSW01_04290 0.67 -0.9
894,157 + CSW01_04290 0.67 +0.6
894,165 - CSW01_04290 0.68 -0.7
894,257 + CSW01_04290 0.79 +1.5
894,257 + CSW01_04290 0.79 -0.3
894,265 - CSW01_04290 0.80 -0.0
894,265 - CSW01_04290 0.80 -1.7
894,372 + +0.1
894,373 + -0.1
894,381 - -0.2
894,535 + CSW01_04295 0.19 -0.3
894,535 + CSW01_04295 0.19 +0.9
894,594 + CSW01_04295 0.32 +0.6
894,621 + CSW01_04295 0.38 -1.2
894,646 + CSW01_04295 0.44 -0.1
894,663 - CSW01_04295 0.47 -0.8
894,671 - CSW01_04295 0.49 -1.3
894,673 - CSW01_04295 0.49 -0.6
894,721 - CSW01_04295 0.60 -0.0
894,811 + CSW01_04295 0.80 -0.2
894,811 + CSW01_04295 0.80 -0.8
894,811 + CSW01_04295 0.80 -0.7
894,927 + +1.0
894,935 - -1.3
894,935 - -0.5
894,935 - -1.2
894,936 + +0.3
894,990 + +1.2
894,992 + -0.6
894,999 + -0.1
895,007 - +0.5
895,137 + CSW01_04300 0.16 -1.3
895,137 + CSW01_04300 0.16 +0.6
895,145 - CSW01_04300 0.17 +0.4
895,145 - CSW01_04300 0.17 +0.8
895,182 + CSW01_04300 0.19 +0.4
895,182 + CSW01_04300 0.19 +0.0
895,187 + CSW01_04300 0.19 +1.0
895,188 + CSW01_04300 0.19 -0.5
895,195 + CSW01_04300 0.20 +0.2
895,195 - CSW01_04300 0.20 +0.4
895,195 - CSW01_04300 0.20 +0.2
895,200 + CSW01_04300 0.20 +0.2
895,201 + CSW01_04300 0.20 +0.1
895,203 - CSW01_04300 0.20 -0.1
895,208 - CSW01_04300 0.21 -0.2
895,209 + CSW01_04300 0.21 +1.5
895,209 + CSW01_04300 0.21 -2.4
895,213 - CSW01_04300 0.21 -0.1
895,213 - CSW01_04300 0.21 +0.7
895,214 + CSW01_04300 0.21 +0.1
895,217 - CSW01_04300 0.21 +0.4
895,231 - CSW01_04300 0.22 +0.3
895,271 - CSW01_04300 0.25 -2.4
895,309 + CSW01_04300 0.27 +0.3
895,314 + CSW01_04300 0.28 +0.8
895,314 + CSW01_04300 0.28 -0.4
895,317 - CSW01_04300 0.28 +0.7
895,319 + CSW01_04300 0.28 +0.1
895,322 - CSW01_04300 0.28 -0.0
895,322 - CSW01_04300 0.28 +0.3
895,322 - CSW01_04300 0.28 +0.7
895,327 - CSW01_04300 0.29 +1.1
895,328 + CSW01_04300 0.29 +0.2
895,344 - CSW01_04300 0.30 -0.0
895,350 + CSW01_04300 0.30 -0.0
895,406 + CSW01_04300 0.34 +0.2
895,436 - CSW01_04300 0.36 +0.4
895,460 - CSW01_04300 0.37 +0.1
895,473 - CSW01_04300 0.38 -1.7
895,527 + CSW01_04300 0.42 +0.8
895,527 + CSW01_04300 0.42 -0.0
895,528 + CSW01_04300 0.42 +0.1
895,528 + CSW01_04300 0.42 -0.4
895,532 + CSW01_04300 0.42 +0.2
895,535 - CSW01_04300 0.42 +1.0
895,535 - CSW01_04300 0.42 -0.9
895,551 - CSW01_04300 0.43 -0.7
895,627 - CSW01_04300 0.48 +0.3
895,690 + CSW01_04300 0.53 +0.1
895,690 + CSW01_04300 0.53 -0.2
895,728 + CSW01_04300 0.55 -0.2
895,728 + CSW01_04300 0.55 -0.5
895,728 + CSW01_04300 0.55 +0.3
895,735 + CSW01_04300 0.56 +0.5
895,736 - CSW01_04300 0.56 +0.6
895,782 - CSW01_04300 0.59 +0.0
895,792 + CSW01_04300 0.59 -0.8
895,792 + CSW01_04300 0.59 -0.7
895,792 + CSW01_04300 0.59 +0.7
895,792 + CSW01_04300 0.59 +0.3
895,792 + CSW01_04300 0.59 -0.2
895,797 + CSW01_04300 0.60 +0.4
895,798 - CSW01_04300 0.60 -1.1
895,800 - CSW01_04300 0.60 -0.7
895,804 + CSW01_04300 0.60 -0.7
895,804 + CSW01_04300 0.60 -0.2
895,812 - CSW01_04300 0.61 -0.3
895,847 + CSW01_04300 0.63 -1.5
895,847 + CSW01_04300 0.63 -2.2
895,860 - CSW01_04300 0.64 +1.1
895,865 + CSW01_04300 0.64 +1.1
895,868 - CSW01_04300 0.64 +0.0
895,871 - CSW01_04300 0.65 +0.4
895,871 - CSW01_04300 0.65 +0.2
895,873 - CSW01_04300 0.65 -1.2
895,873 - CSW01_04300 0.65 +0.4
895,878 - CSW01_04300 0.65 +0.1
895,883 - CSW01_04300 0.65 -0.0
895,889 + CSW01_04300 0.66 -0.9
895,889 + CSW01_04300 0.66 +0.3
895,895 + CSW01_04300 0.66 -1.0
895,897 - CSW01_04300 0.66 +0.1
895,897 - CSW01_04300 0.66 -1.7
895,897 - CSW01_04300 0.66 +1.1
895,903 - CSW01_04300 0.67 -1.4

Or see this region's nucleotide sequence