Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03335 and CSW01_03340 are separated by 119 nucleotides CSW01_03340 and CSW01_03345 are separated by 100 nucleotides CSW01_03345 and CSW01_03350 are separated by 66 nucleotides CSW01_03350 and CSW01_03355 are separated by 25 nucleotides
CSW01_03335: CSW01_03335 - ribosome assembly RNA-binding protein YhbY, at 675,702 to 675,998
_03335
CSW01_03340: CSW01_03340 - ribosomal RNA large subunit methyltransferase E, at 676,118 to 676,747
_03340
CSW01_03345: CSW01_03345 - ATP-dependent zinc metalloprotease FtsH, at 676,848 to 678,803
_03345
CSW01_03350: CSW01_03350 - dihydropteroate synthase, at 678,870 to 679,706
_03350
CSW01_03355: CSW01_03355 - phosphoglucosamine mutase, at 679,732 to 681,072
_03355
Position (kb) 676
677
678
679 Strain fitness (log2 ratio) -1
0
1 at 675.904 kb on + strand, within CSW01_03335 at 675.935 kb on - strand, within CSW01_03335 at 675.935 kb on - strand, within CSW01_03335 at 675.935 kb on - strand, within CSW01_03335 at 675.953 kb on + strand, within CSW01_03335 at 676.085 kb on + strand at 676.090 kb on + strand at 676.126 kb on + strand at 676.155 kb on + strand at 676.163 kb on - strand at 676.198 kb on + strand, within CSW01_03340 at 676.346 kb on + strand, within CSW01_03340 at 676.427 kb on + strand, within CSW01_03340 at 676.440 kb on - strand, within CSW01_03340 at 676.440 kb on - strand, within CSW01_03340 at 676.440 kb on - strand, within CSW01_03340 at 676.561 kb on + strand, within CSW01_03340 at 676.692 kb on + strand at 676.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B remove 675,904 + CSW01_03335 0.68 +0.3 675,935 - CSW01_03335 0.78 -0.5 675,935 - CSW01_03335 0.78 +0.2 675,935 - CSW01_03335 0.78 -0.4 675,953 + CSW01_03335 0.85 -0.1 676,085 + +0.3 676,090 + +0.3 676,126 + -0.3 676,155 + -0.8 676,163 - +0.4 676,198 + CSW01_03340 0.13 +0.3 676,346 + CSW01_03340 0.36 -0.7 676,427 + CSW01_03340 0.49 +0.4 676,440 - CSW01_03340 0.51 +1.1 676,440 - CSW01_03340 0.51 +0.8 676,440 - CSW01_03340 0.51 -0.8 676,561 + CSW01_03340 0.70 -0.1 676,692 + -0.4 676,700 - +0.1
Or see this region's nucleotide sequence