Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03310

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03305 and CSW01_03310 are separated by 81 nucleotidesCSW01_03310 and CSW01_03315 are separated by 130 nucleotides CSW01_03305: CSW01_03305 - AcrB/AcrD/AcrF family protein, at 666,141 to 669,260 _03305 CSW01_03310: CSW01_03310 - peptidase M23, at 669,342 to 670,643 _03310 CSW01_03315: CSW01_03315 - Tyrosine--tRNA ligase 2, at 670,774 to 671,961 _03315 Position (kb) 669 670 671Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 668.475 kb on - strand, within CSW01_03305at 668.488 kb on - strand, within CSW01_03305at 668.495 kb on + strand, within CSW01_03305at 668.563 kb on - strand, within CSW01_03305at 668.577 kb on + strand, within CSW01_03305at 668.577 kb on + strand, within CSW01_03305at 668.577 kb on + strand, within CSW01_03305at 668.585 kb on - strand, within CSW01_03305at 668.585 kb on - strand, within CSW01_03305at 668.587 kb on - strand, within CSW01_03305at 668.605 kb on + strand, within CSW01_03305at 668.719 kb on - strand, within CSW01_03305at 668.756 kb on + strand, within CSW01_03305at 668.756 kb on + strand, within CSW01_03305at 668.764 kb on - strand, within CSW01_03305at 668.764 kb on - strand, within CSW01_03305at 668.764 kb on - strand, within CSW01_03305at 668.791 kb on - strand, within CSW01_03305at 668.906 kb on + strand, within CSW01_03305at 668.906 kb on + strand, within CSW01_03305at 668.976 kb on - strandat 669.014 kb on - strandat 669.108 kb on + strandat 669.108 kb on + strandat 669.116 kb on - strandat 669.116 kb on - strandat 669.126 kb on - strandat 669.147 kb on + strandat 669.155 kb on - strandat 669.155 kb on - strandat 669.165 kb on + strandat 669.165 kb on + strandat 669.165 kb on + strandat 669.165 kb on + strandat 669.165 kb on + strandat 669.165 kb on + strandat 669.165 kb on + strandat 669.172 kb on + strandat 669.172 kb on + strandat 669.172 kb on + strandat 669.173 kb on - strandat 669.173 kb on - strandat 669.180 kb on - strandat 669.180 kb on - strandat 669.180 kb on - strandat 669.180 kb on - strandat 669.180 kb on - strandat 669.180 kb on - strandat 669.199 kb on + strandat 669.199 kb on + strandat 669.207 kb on - strandat 669.207 kb on - strandat 669.220 kb on + strandat 669.254 kb on + strandat 669.262 kb on - strandat 669.285 kb on - strandat 669.415 kb on - strandat 669.433 kb on + strandat 669.443 kb on - strandat 669.463 kb on - strandat 669.597 kb on - strand, within CSW01_03310at 669.631 kb on - strand, within CSW01_03310at 669.631 kb on - strand, within CSW01_03310at 669.747 kb on - strand, within CSW01_03310at 669.751 kb on + strand, within CSW01_03310at 669.759 kb on - strand, within CSW01_03310at 669.787 kb on + strand, within CSW01_03310at 669.865 kb on + strand, within CSW01_03310at 669.873 kb on - strand, within CSW01_03310at 669.945 kb on + strand, within CSW01_03310at 670.070 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.078 kb on - strand, within CSW01_03310at 670.078 kb on - strand, within CSW01_03310at 670.083 kb on - strand, within CSW01_03310at 670.085 kb on - strand, within CSW01_03310at 670.090 kb on - strand, within CSW01_03310at 670.131 kb on + strand, within CSW01_03310at 670.209 kb on + strand, within CSW01_03310at 670.220 kb on + strand, within CSW01_03310at 670.220 kb on + strand, within CSW01_03310at 670.220 kb on + strand, within CSW01_03310at 670.220 kb on + strand, within CSW01_03310at 670.228 kb on - strand, within CSW01_03310at 670.228 kb on - strand, within CSW01_03310at 670.228 kb on - strand, within CSW01_03310at 670.228 kb on - strand, within CSW01_03310at 670.290 kb on - strand, within CSW01_03310at 670.340 kb on - strand, within CSW01_03310at 670.398 kb on - strand, within CSW01_03310at 670.406 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.445 kb on - strand, within CSW01_03310at 670.473 kb on - strand, within CSW01_03310at 670.503 kb on - strand, within CSW01_03310at 670.533 kb on + strandat 670.596 kb on + strandat 670.604 kb on - strandat 670.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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668,475 - CSW01_03305 0.75 +0.2
668,488 - CSW01_03305 0.75 +0.2
668,495 + CSW01_03305 0.75 -1.1
668,563 - CSW01_03305 0.78 +0.6
668,577 + CSW01_03305 0.78 +0.2
668,577 + CSW01_03305 0.78 +0.3
668,577 + CSW01_03305 0.78 -2.2
668,585 - CSW01_03305 0.78 +0.4
668,585 - CSW01_03305 0.78 -0.1
668,587 - CSW01_03305 0.78 +0.8
668,605 + CSW01_03305 0.79 +0.7
668,719 - CSW01_03305 0.83 +0.9
668,756 + CSW01_03305 0.84 +0.1
668,756 + CSW01_03305 0.84 +0.2
668,764 - CSW01_03305 0.84 -0.1
668,764 - CSW01_03305 0.84 +0.6
668,764 - CSW01_03305 0.84 -1.2
668,791 - CSW01_03305 0.85 -0.3
668,906 + CSW01_03305 0.89 +0.1
668,906 + CSW01_03305 0.89 +0.0
668,976 - +0.1
669,014 - -1.0
669,108 + +0.7
669,108 + +0.3
669,116 - +0.1
669,116 - +1.7
669,126 - +1.6
669,147 + +0.2
669,155 - -0.1
669,155 - +0.5
669,165 + +1.3
669,165 + +0.0
669,165 + -0.2
669,165 + +0.1
669,165 + +0.4
669,165 + +0.1
669,165 + -0.6
669,172 + -0.3
669,172 + +0.1
669,172 + -0.3
669,173 - -0.6
669,173 - -3.1
669,180 - -0.7
669,180 - +0.6
669,180 - -1.8
669,180 - -0.5
669,180 - -0.7
669,180 - -0.6
669,199 + -0.0
669,199 + +1.5
669,207 - -0.0
669,207 - -1.0
669,220 + -0.2
669,254 + -0.2
669,262 - +0.3
669,285 - -0.5
669,415 - -0.0
669,433 + +0.0
669,443 - +0.2
669,463 - +0.2
669,597 - CSW01_03310 0.20 -1.3
669,631 - CSW01_03310 0.22 -0.4
669,631 - CSW01_03310 0.22 +0.2
669,747 - CSW01_03310 0.31 +1.9
669,751 + CSW01_03310 0.31 +0.4
669,759 - CSW01_03310 0.32 -0.7
669,787 + CSW01_03310 0.34 +0.2
669,865 + CSW01_03310 0.40 -0.2
669,873 - CSW01_03310 0.41 +0.3
669,945 + CSW01_03310 0.46 -0.0
670,070 + CSW01_03310 0.56 +1.1
670,075 + CSW01_03310 0.56 +0.4
670,075 + CSW01_03310 0.56 -0.0
670,075 + CSW01_03310 0.56 -0.4
670,075 + CSW01_03310 0.56 -0.1
670,075 + CSW01_03310 0.56 +0.3
670,075 + CSW01_03310 0.56 +0.5
670,078 - CSW01_03310 0.57 -0.7
670,078 - CSW01_03310 0.57 +1.2
670,083 - CSW01_03310 0.57 +1.9
670,085 - CSW01_03310 0.57 +0.2
670,090 - CSW01_03310 0.57 +1.2
670,131 + CSW01_03310 0.61 -0.1
670,209 + CSW01_03310 0.67 +0.5
670,220 + CSW01_03310 0.67 +0.6
670,220 + CSW01_03310 0.67 +0.8
670,220 + CSW01_03310 0.67 -0.6
670,220 + CSW01_03310 0.67 +0.9
670,228 - CSW01_03310 0.68 +0.1
670,228 - CSW01_03310 0.68 -0.1
670,228 - CSW01_03310 0.68 +1.2
670,228 - CSW01_03310 0.68 -0.2
670,290 - CSW01_03310 0.73 +0.7
670,340 - CSW01_03310 0.77 +1.3
670,398 - CSW01_03310 0.81 +0.1
670,406 + CSW01_03310 0.82 +0.2
670,427 + CSW01_03310 0.83 +0.3
670,427 + CSW01_03310 0.83 -1.8
670,427 + CSW01_03310 0.83 +0.3
670,427 + CSW01_03310 0.83 -0.2
670,427 + CSW01_03310 0.83 -1.5
670,427 + CSW01_03310 0.83 -0.4
670,427 + CSW01_03310 0.83 -0.4
670,427 + CSW01_03310 0.83 -0.7
670,427 + CSW01_03310 0.83 +0.6
670,427 + CSW01_03310 0.83 -0.1
670,427 + CSW01_03310 0.83 -0.2
670,427 + CSW01_03310 0.83 +1.7
670,427 + CSW01_03310 0.83 +1.1
670,435 - CSW01_03310 0.84 -0.4
670,435 - CSW01_03310 0.84 +0.2
670,435 - CSW01_03310 0.84 -0.7
670,435 - CSW01_03310 0.84 -0.8
670,435 - CSW01_03310 0.84 -2.5
670,435 - CSW01_03310 0.84 -0.3
670,435 - CSW01_03310 0.84 +0.4
670,435 - CSW01_03310 0.84 +0.6
670,435 - CSW01_03310 0.84 +0.0
670,435 - CSW01_03310 0.84 +0.0
670,435 - CSW01_03310 0.84 -0.3
670,445 - CSW01_03310 0.85 +0.2
670,473 - CSW01_03310 0.87 -0.1
670,503 - CSW01_03310 0.89 -0.8
670,533 + +0.2
670,596 + -0.1
670,604 - -1.0
670,642 - -2.1

Or see this region's nucleotide sequence