Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02860

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02850 and CSW01_02855 are separated by 76 nucleotidesCSW01_02855 and CSW01_02860 are separated by 10 nucleotidesCSW01_02860 and CSW01_02865 overlap by 4 nucleotides CSW01_02850: CSW01_02850 - sulfate ABC transporter substrate-binding protein, at 568,700 to 569,701 _02850 CSW01_02855: CSW01_02855 - sulfate/thiosulfate ABC transporter permease CysT, at 569,778 to 570,629 _02855 CSW01_02860: CSW01_02860 - sulfate ABC transporter permease subunit CysW, at 570,640 to 571,503 _02860 CSW01_02865: CSW01_02865 - sulfate/thiosulfate import ATP-binding protein CysA, at 571,500 to 572,630 _02865 Position (kb) 570 571 572Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 569.743 kb on + strandat 569.751 kb on - strandat 569.751 kb on - strandat 569.788 kb on + strandat 569.893 kb on - strand, within CSW01_02855at 569.898 kb on - strand, within CSW01_02855at 569.979 kb on - strand, within CSW01_02855at 570.019 kb on - strand, within CSW01_02855at 570.092 kb on + strand, within CSW01_02855at 570.113 kb on + strand, within CSW01_02855at 570.121 kb on - strand, within CSW01_02855at 570.172 kb on + strand, within CSW01_02855at 570.194 kb on - strand, within CSW01_02855at 570.228 kb on - strand, within CSW01_02855at 570.245 kb on - strand, within CSW01_02855at 570.270 kb on + strand, within CSW01_02855at 570.273 kb on - strand, within CSW01_02855at 570.315 kb on + strand, within CSW01_02855at 570.322 kb on + strand, within CSW01_02855at 570.330 kb on - strand, within CSW01_02855at 570.365 kb on - strand, within CSW01_02855at 570.402 kb on - strand, within CSW01_02855at 570.407 kb on - strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.428 kb on + strand, within CSW01_02855at 570.428 kb on + strand, within CSW01_02855at 570.428 kb on + strand, within CSW01_02855at 570.436 kb on - strand, within CSW01_02855at 570.470 kb on - strand, within CSW01_02855at 570.598 kb on + strandat 570.598 kb on + strandat 570.606 kb on - strandat 570.606 kb on - strandat 570.648 kb on + strandat 570.648 kb on + strandat 570.656 kb on - strandat 570.656 kb on - strandat 570.738 kb on - strand, within CSW01_02860at 570.774 kb on + strand, within CSW01_02860at 570.784 kb on - strand, within CSW01_02860at 570.805 kb on - strand, within CSW01_02860at 570.830 kb on + strand, within CSW01_02860at 570.888 kb on + strand, within CSW01_02860at 571.024 kb on + strand, within CSW01_02860at 571.025 kb on + strand, within CSW01_02860at 571.058 kb on + strand, within CSW01_02860at 571.078 kb on + strand, within CSW01_02860at 571.081 kb on - strand, within CSW01_02860at 571.208 kb on + strand, within CSW01_02860at 571.218 kb on + strand, within CSW01_02860at 571.226 kb on - strand, within CSW01_02860at 571.247 kb on - strand, within CSW01_02860at 571.273 kb on + strand, within CSW01_02860at 571.279 kb on - strand, within CSW01_02860at 571.281 kb on - strand, within CSW01_02860at 571.289 kb on - strand, within CSW01_02860at 571.319 kb on - strand, within CSW01_02860at 571.331 kb on - strand, within CSW01_02860at 571.381 kb on + strand, within CSW01_02860at 571.438 kb on + strandat 571.496 kb on + strandat 571.605 kb on - strandat 571.606 kb on - strandat 571.744 kb on + strand, within CSW01_02865at 571.786 kb on + strand, within CSW01_02865at 571.819 kb on + strand, within CSW01_02865at 571.825 kb on - strand, within CSW01_02865at 571.892 kb on + strand, within CSW01_02865at 571.907 kb on + strand, within CSW01_02865at 571.915 kb on - strand, within CSW01_02865at 571.915 kb on - strand, within CSW01_02865at 571.915 kb on - strand, within CSW01_02865at 571.968 kb on + strand, within CSW01_02865at 572.097 kb on + strand, within CSW01_02865at 572.097 kb on + strand, within CSW01_02865at 572.098 kb on + strand, within CSW01_02865at 572.099 kb on - strand, within CSW01_02865at 572.106 kb on + strand, within CSW01_02865at 572.106 kb on - strand, within CSW01_02865at 572.168 kb on + strand, within CSW01_02865at 572.168 kb on + strand, within CSW01_02865at 572.176 kb on - strand, within CSW01_02865at 572.176 kb on - strand, within CSW01_02865at 572.178 kb on + strand, within CSW01_02865at 572.225 kb on + strand, within CSW01_02865at 572.233 kb on - strand, within CSW01_02865at 572.263 kb on - strand, within CSW01_02865at 572.337 kb on - strand, within CSW01_02865at 572.337 kb on - strand, within CSW01_02865at 572.343 kb on - strand, within CSW01_02865at 572.371 kb on - strand, within CSW01_02865at 572.378 kb on - strand, within CSW01_02865at 572.407 kb on + strand, within CSW01_02865at 572.407 kb on + strand, within CSW01_02865at 572.415 kb on - strand, within CSW01_02865at 572.415 kb on - strand, within CSW01_02865at 572.424 kb on + strand, within CSW01_02865at 572.432 kb on - strand, within CSW01_02865at 572.449 kb on + strand, within CSW01_02865at 572.449 kb on + strand, within CSW01_02865at 572.449 kb on + strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865at 572.457 kb on - strand, within CSW01_02865

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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569,743 + -0.2
569,751 - -0.1
569,751 - -0.0
569,788 + +0.8
569,893 - CSW01_02855 0.13 +1.3
569,898 - CSW01_02855 0.14 +0.5
569,979 - CSW01_02855 0.24 -1.7
570,019 - CSW01_02855 0.28 -0.2
570,092 + CSW01_02855 0.37 +0.0
570,113 + CSW01_02855 0.39 +0.5
570,121 - CSW01_02855 0.40 -0.7
570,172 + CSW01_02855 0.46 -0.2
570,194 - CSW01_02855 0.49 -0.1
570,228 - CSW01_02855 0.53 -0.1
570,245 - CSW01_02855 0.55 +0.3
570,270 + CSW01_02855 0.58 -0.1
570,273 - CSW01_02855 0.58 -0.1
570,315 + CSW01_02855 0.63 +0.4
570,322 + CSW01_02855 0.64 -0.0
570,330 - CSW01_02855 0.65 +1.6
570,365 - CSW01_02855 0.69 -0.2
570,402 - CSW01_02855 0.73 -1.0
570,407 - CSW01_02855 0.74 -0.5
570,418 + CSW01_02855 0.75 +1.5
570,418 + CSW01_02855 0.75 +0.4
570,418 + CSW01_02855 0.75 +0.7
570,418 + CSW01_02855 0.75 -0.6
570,418 + CSW01_02855 0.75 -0.3
570,418 + CSW01_02855 0.75 +0.8
570,418 + CSW01_02855 0.75 +1.3
570,418 + CSW01_02855 0.75 +0.7
570,418 + CSW01_02855 0.75 -0.5
570,418 + CSW01_02855 0.75 -0.8
570,418 + CSW01_02855 0.75 +0.3
570,426 - CSW01_02855 0.76 -0.3
570,426 - CSW01_02855 0.76 -0.2
570,426 - CSW01_02855 0.76 -0.9
570,426 - CSW01_02855 0.76 -1.3
570,426 - CSW01_02855 0.76 -1.0
570,426 - CSW01_02855 0.76 -3.2
570,426 - CSW01_02855 0.76 +0.7
570,426 - CSW01_02855 0.76 -0.9
570,426 - CSW01_02855 0.76 +0.6
570,426 - CSW01_02855 0.76 -0.8
570,426 - CSW01_02855 0.76 -0.6
570,426 - CSW01_02855 0.76 -0.9
570,426 - CSW01_02855 0.76 -0.1
570,428 + CSW01_02855 0.76 -0.7
570,428 + CSW01_02855 0.76 -1.0
570,428 + CSW01_02855 0.76 +1.2
570,436 - CSW01_02855 0.77 -0.2
570,470 - CSW01_02855 0.81 +0.9
570,598 + -0.8
570,598 + +1.3
570,606 - -0.6
570,606 - -0.5
570,648 + -0.4
570,648 + -0.2
570,656 - -0.0
570,656 - +0.8
570,738 - CSW01_02860 0.11 +2.2
570,774 + CSW01_02860 0.16 +0.2
570,784 - CSW01_02860 0.17 -0.1
570,805 - CSW01_02860 0.19 +1.0
570,830 + CSW01_02860 0.22 -0.3
570,888 + CSW01_02860 0.29 +0.2
571,024 + CSW01_02860 0.44 +0.3
571,025 + CSW01_02860 0.45 +1.5
571,058 + CSW01_02860 0.48 -0.5
571,078 + CSW01_02860 0.51 +0.2
571,081 - CSW01_02860 0.51 -0.5
571,208 + CSW01_02860 0.66 +0.7
571,218 + CSW01_02860 0.67 +0.3
571,226 - CSW01_02860 0.68 +0.6
571,247 - CSW01_02860 0.70 -0.7
571,273 + CSW01_02860 0.73 -0.1
571,279 - CSW01_02860 0.74 +0.9
571,281 - CSW01_02860 0.74 +0.1
571,289 - CSW01_02860 0.75 -0.6
571,319 - CSW01_02860 0.79 +0.5
571,331 - CSW01_02860 0.80 +0.5
571,381 + CSW01_02860 0.86 +0.5
571,438 + +0.6
571,496 + -0.4
571,605 - +0.5
571,606 - +0.4
571,744 + CSW01_02865 0.22 +1.5
571,786 + CSW01_02865 0.25 +1.6
571,819 + CSW01_02865 0.28 -0.4
571,825 - CSW01_02865 0.29 -0.5
571,892 + CSW01_02865 0.35 +1.0
571,907 + CSW01_02865 0.36 -0.8
571,915 - CSW01_02865 0.37 +0.4
571,915 - CSW01_02865 0.37 +2.6
571,915 - CSW01_02865 0.37 +0.3
571,968 + CSW01_02865 0.41 -1.1
572,097 + CSW01_02865 0.53 +1.9
572,097 + CSW01_02865 0.53 +0.3
572,098 + CSW01_02865 0.53 -0.8
572,099 - CSW01_02865 0.53 -1.0
572,106 + CSW01_02865 0.54 +0.4
572,106 - CSW01_02865 0.54 -2.3
572,168 + CSW01_02865 0.59 +0.9
572,168 + CSW01_02865 0.59 -0.3
572,176 - CSW01_02865 0.60 -0.9
572,176 - CSW01_02865 0.60 -0.5
572,178 + CSW01_02865 0.60 -0.2
572,225 + CSW01_02865 0.64 +0.2
572,233 - CSW01_02865 0.65 +0.2
572,263 - CSW01_02865 0.67 +0.3
572,337 - CSW01_02865 0.74 +0.9
572,337 - CSW01_02865 0.74 +0.7
572,343 - CSW01_02865 0.75 -0.7
572,371 - CSW01_02865 0.77 -0.3
572,378 - CSW01_02865 0.78 -2.4
572,407 + CSW01_02865 0.80 -1.3
572,407 + CSW01_02865 0.80 +0.5
572,415 - CSW01_02865 0.81 +0.5
572,415 - CSW01_02865 0.81 -0.7
572,424 + CSW01_02865 0.82 +0.1
572,432 - CSW01_02865 0.82 -0.4
572,449 + CSW01_02865 0.84 +0.5
572,449 + CSW01_02865 0.84 +0.2
572,449 + CSW01_02865 0.84 -0.1
572,457 - CSW01_02865 0.85 +0.1
572,457 - CSW01_02865 0.85 -1.2
572,457 - CSW01_02865 0.85 +0.5
572,457 - CSW01_02865 0.85 +1.0

Or see this region's nucleotide sequence