Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01455

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01450 and CSW01_01455 are separated by 234 nucleotidesCSW01_01455 and CSW01_01460 are separated by 20 nucleotides CSW01_01450: CSW01_01450 - methyl-accepting chemotaxis protein, at 288,092 to 289,762 _01450 CSW01_01455: CSW01_01455 - peptidase, at 289,997 to 290,674 _01455 CSW01_01460: CSW01_01460 - TonB-dependent siderophore receptor, at 290,695 to 292,737 _01460 Position (kb) 289 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 289.033 kb on - strand, within CSW01_01450at 289.075 kb on + strand, within CSW01_01450at 289.083 kb on - strand, within CSW01_01450at 289.145 kb on - strand, within CSW01_01450at 289.145 kb on - strand, within CSW01_01450at 289.145 kb on - strand, within CSW01_01450at 289.147 kb on + strand, within CSW01_01450at 289.147 kb on + strand, within CSW01_01450at 289.155 kb on - strand, within CSW01_01450at 289.155 kb on - strand, within CSW01_01450at 289.224 kb on + strand, within CSW01_01450at 289.224 kb on + strand, within CSW01_01450at 289.224 kb on + strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.232 kb on - strand, within CSW01_01450at 289.283 kb on - strand, within CSW01_01450at 289.294 kb on + strand, within CSW01_01450at 289.294 kb on + strand, within CSW01_01450at 289.294 kb on + strand, within CSW01_01450at 289.302 kb on - strand, within CSW01_01450at 289.340 kb on + strand, within CSW01_01450at 289.348 kb on - strand, within CSW01_01450at 289.348 kb on - strand, within CSW01_01450at 289.363 kb on + strand, within CSW01_01450at 289.363 kb on + strand, within CSW01_01450at 289.363 kb on + strand, within CSW01_01450at 289.363 kb on + strand, within CSW01_01450at 289.363 kb on + strand, within CSW01_01450at 289.363 kb on + strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.371 kb on - strand, within CSW01_01450at 289.381 kb on - strand, within CSW01_01450at 289.381 kb on - strand, within CSW01_01450at 289.403 kb on + strand, within CSW01_01450at 289.469 kb on + strand, within CSW01_01450at 289.504 kb on - strand, within CSW01_01450at 289.523 kb on + strand, within CSW01_01450at 289.523 kb on + strand, within CSW01_01450at 289.523 kb on + strand, within CSW01_01450at 289.531 kb on - strand, within CSW01_01450at 289.531 kb on - strand, within CSW01_01450at 289.531 kb on - strand, within CSW01_01450at 289.537 kb on + strand, within CSW01_01450at 289.537 kb on + strand, within CSW01_01450at 289.542 kb on + strand, within CSW01_01450at 289.542 kb on + strand, within CSW01_01450at 289.547 kb on + strand, within CSW01_01450at 289.550 kb on - strand, within CSW01_01450at 289.569 kb on - strand, within CSW01_01450at 289.625 kb on + strandat 289.717 kb on + strandat 289.717 kb on + strandat 289.717 kb on + strandat 289.725 kb on - strandat 289.728 kb on + strandat 289.743 kb on + strandat 289.751 kb on - strandat 289.780 kb on + strandat 289.835 kb on + strandat 289.843 kb on + strandat 289.843 kb on + strandat 289.879 kb on + strandat 289.925 kb on + strandat 289.934 kb on + strandat 289.949 kb on - strandat 290.017 kb on + strandat 290.077 kb on - strand, within CSW01_01455at 290.077 kb on - strand, within CSW01_01455at 290.089 kb on + strand, within CSW01_01455at 290.094 kb on + strand, within CSW01_01455at 290.104 kb on + strand, within CSW01_01455at 290.153 kb on + strand, within CSW01_01455at 290.160 kb on + strand, within CSW01_01455at 290.161 kb on - strand, within CSW01_01455at 290.184 kb on + strand, within CSW01_01455at 290.186 kb on + strand, within CSW01_01455at 290.231 kb on - strand, within CSW01_01455at 290.272 kb on - strand, within CSW01_01455at 290.275 kb on + strand, within CSW01_01455at 290.287 kb on - strand, within CSW01_01455at 290.320 kb on + strand, within CSW01_01455at 290.320 kb on + strand, within CSW01_01455at 290.328 kb on - strand, within CSW01_01455at 290.380 kb on + strand, within CSW01_01455at 290.385 kb on + strand, within CSW01_01455at 290.393 kb on - strand, within CSW01_01455at 290.393 kb on - strand, within CSW01_01455at 290.393 kb on - strand, within CSW01_01455at 290.398 kb on - strand, within CSW01_01455at 290.414 kb on - strand, within CSW01_01455at 290.428 kb on - strand, within CSW01_01455at 290.517 kb on + strand, within CSW01_01455at 290.525 kb on - strand, within CSW01_01455at 290.525 kb on - strand, within CSW01_01455at 290.539 kb on + strand, within CSW01_01455at 290.585 kb on - strand, within CSW01_01455at 290.585 kb on - strand, within CSW01_01455at 290.596 kb on - strand, within CSW01_01455at 290.596 kb on - strand, within CSW01_01455at 290.596 kb on - strand, within CSW01_01455at 290.607 kb on - strandat 290.632 kb on + strandat 290.637 kb on + strandat 290.642 kb on + strandat 290.648 kb on + strandat 290.654 kb on + strandat 290.654 kb on - strandat 290.701 kb on - strandat 290.739 kb on - strandat 290.801 kb on + strandat 290.803 kb on + strandat 290.811 kb on - strandat 290.811 kb on - strandat 290.864 kb on - strandat 290.871 kb on + strandat 290.879 kb on - strandat 290.879 kb on - strandat 290.928 kb on + strand, within CSW01_01460at 290.936 kb on - strand, within CSW01_01460at 290.960 kb on + strand, within CSW01_01460at 290.968 kb on - strand, within CSW01_01460at 290.975 kb on + strand, within CSW01_01460at 290.975 kb on + strand, within CSW01_01460at 290.975 kb on + strand, within CSW01_01460at 290.983 kb on - strand, within CSW01_01460at 290.983 kb on - strand, within CSW01_01460at 290.983 kb on - strand, within CSW01_01460at 291.090 kb on + strand, within CSW01_01460at 291.090 kb on + strand, within CSW01_01460at 291.090 kb on + strand, within CSW01_01460at 291.090 kb on + strand, within CSW01_01460at 291.090 kb on + strand, within CSW01_01460at 291.098 kb on - strand, within CSW01_01460at 291.098 kb on - strand, within CSW01_01460at 291.098 kb on - strand, within CSW01_01460at 291.098 kb on - strand, within CSW01_01460at 291.103 kb on - strand, within CSW01_01460at 291.105 kb on + strand, within CSW01_01460at 291.105 kb on + strand, within CSW01_01460at 291.105 kb on + strand, within CSW01_01460at 291.105 kb on + strand, within CSW01_01460at 291.105 kb on + strand, within CSW01_01460at 291.105 kb on + strand, within CSW01_01460at 291.113 kb on - strand, within CSW01_01460at 291.113 kb on - strand, within CSW01_01460at 291.113 kb on - strand, within CSW01_01460at 291.113 kb on - strand, within CSW01_01460at 291.113 kb on - strand, within CSW01_01460at 291.113 kb on - strand, within CSW01_01460at 291.138 kb on + strand, within CSW01_01460at 291.138 kb on + strand, within CSW01_01460at 291.201 kb on + strand, within CSW01_01460at 291.233 kb on - strand, within CSW01_01460at 291.233 kb on - strand, within CSW01_01460at 291.251 kb on + strand, within CSW01_01460at 291.259 kb on - strand, within CSW01_01460at 291.261 kb on + strand, within CSW01_01460at 291.269 kb on - strand, within CSW01_01460at 291.271 kb on - strand, within CSW01_01460at 291.285 kb on + strand, within CSW01_01460at 291.361 kb on - strand, within CSW01_01460at 291.370 kb on + strand, within CSW01_01460at 291.370 kb on + strand, within CSW01_01460at 291.378 kb on - strand, within CSW01_01460at 291.378 kb on - strand, within CSW01_01460at 291.378 kb on - strand, within CSW01_01460at 291.382 kb on + strand, within CSW01_01460at 291.383 kb on + strand, within CSW01_01460at 291.391 kb on - strand, within CSW01_01460at 291.402 kb on - strand, within CSW01_01460at 291.402 kb on - strand, within CSW01_01460at 291.413 kb on - strand, within CSW01_01460at 291.413 kb on - strand, within CSW01_01460at 291.413 kb on - strand, within CSW01_01460at 291.413 kb on - strand, within CSW01_01460at 291.413 kb on - strand, within CSW01_01460at 291.435 kb on - strand, within CSW01_01460at 291.486 kb on + strand, within CSW01_01460at 291.509 kb on + strand, within CSW01_01460at 291.531 kb on + strand, within CSW01_01460at 291.539 kb on - strand, within CSW01_01460at 291.544 kb on + strand, within CSW01_01460at 291.595 kb on - strand, within CSW01_01460at 291.611 kb on + strand, within CSW01_01460at 291.611 kb on + strand, within CSW01_01460at 291.611 kb on + strand, within CSW01_01460at 291.621 kb on + strand, within CSW01_01460at 291.622 kb on - strand, within CSW01_01460at 291.629 kb on - strand, within CSW01_01460at 291.657 kb on - strand, within CSW01_01460

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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289,033 - CSW01_01450 0.56 +0.3
289,075 + CSW01_01450 0.59 +1.6
289,083 - CSW01_01450 0.59 -0.4
289,145 - CSW01_01450 0.63 +0.4
289,145 - CSW01_01450 0.63 +0.1
289,145 - CSW01_01450 0.63 +0.1
289,147 + CSW01_01450 0.63 -1.2
289,147 + CSW01_01450 0.63 -0.2
289,155 - CSW01_01450 0.64 +0.1
289,155 - CSW01_01450 0.64 +0.2
289,224 + CSW01_01450 0.68 +0.6
289,224 + CSW01_01450 0.68 -0.1
289,224 + CSW01_01450 0.68 -0.1
289,232 - CSW01_01450 0.68 +0.3
289,232 - CSW01_01450 0.68 +1.0
289,232 - CSW01_01450 0.68 -0.6
289,232 - CSW01_01450 0.68 +0.1
289,232 - CSW01_01450 0.68 -0.1
289,232 - CSW01_01450 0.68 +0.4
289,232 - CSW01_01450 0.68 +0.2
289,232 - CSW01_01450 0.68 -0.1
289,283 - CSW01_01450 0.71 -0.4
289,294 + CSW01_01450 0.72 +1.6
289,294 + CSW01_01450 0.72 -1.2
289,294 + CSW01_01450 0.72 +0.1
289,302 - CSW01_01450 0.72 -0.2
289,340 + CSW01_01450 0.75 -0.2
289,348 - CSW01_01450 0.75 +0.4
289,348 - CSW01_01450 0.75 -0.7
289,363 + CSW01_01450 0.76 +0.4
289,363 + CSW01_01450 0.76 +0.1
289,363 + CSW01_01450 0.76 -0.3
289,363 + CSW01_01450 0.76 +3.0
289,363 + CSW01_01450 0.76 -0.0
289,363 + CSW01_01450 0.76 +0.1
289,371 - CSW01_01450 0.77 +0.3
289,371 - CSW01_01450 0.77 -0.5
289,371 - CSW01_01450 0.77 +0.2
289,371 - CSW01_01450 0.77 -0.5
289,371 - CSW01_01450 0.77 -0.4
289,371 - CSW01_01450 0.77 -0.5
289,371 - CSW01_01450 0.77 +0.8
289,371 - CSW01_01450 0.77 -0.7
289,371 - CSW01_01450 0.77 -0.1
289,381 - CSW01_01450 0.77 -0.2
289,381 - CSW01_01450 0.77 -0.4
289,403 + CSW01_01450 0.78 -0.2
289,469 + CSW01_01450 0.82 -0.1
289,504 - CSW01_01450 0.85 +0.8
289,523 + CSW01_01450 0.86 +0.6
289,523 + CSW01_01450 0.86 +0.6
289,523 + CSW01_01450 0.86 -0.8
289,531 - CSW01_01450 0.86 -0.9
289,531 - CSW01_01450 0.86 +0.0
289,531 - CSW01_01450 0.86 +0.3
289,537 + CSW01_01450 0.86 +0.1
289,537 + CSW01_01450 0.86 -0.1
289,542 + CSW01_01450 0.87 +0.1
289,542 + CSW01_01450 0.87 -0.4
289,547 + CSW01_01450 0.87 +0.1
289,550 - CSW01_01450 0.87 -0.1
289,569 - CSW01_01450 0.88 +0.1
289,625 + -0.5
289,717 + +0.2
289,717 + +1.1
289,717 + -0.3
289,725 - +0.3
289,728 + -0.1
289,743 + -0.0
289,751 - -0.3
289,780 + +0.4
289,835 + -0.2
289,843 + +1.7
289,843 + -0.2
289,879 + +0.0
289,925 + -0.2
289,934 + -0.6
289,949 - -0.7
290,017 + +1.3
290,077 - CSW01_01455 0.12 -2.3
290,077 - CSW01_01455 0.12 -0.1
290,089 + CSW01_01455 0.14 +0.1
290,094 + CSW01_01455 0.14 +0.1
290,104 + CSW01_01455 0.16 +0.6
290,153 + CSW01_01455 0.23 -0.6
290,160 + CSW01_01455 0.24 +0.9
290,161 - CSW01_01455 0.24 -0.6
290,184 + CSW01_01455 0.28 -0.9
290,186 + CSW01_01455 0.28 -0.6
290,231 - CSW01_01455 0.35 -1.0
290,272 - CSW01_01455 0.41 -0.3
290,275 + CSW01_01455 0.41 +0.7
290,287 - CSW01_01455 0.43 +0.6
290,320 + CSW01_01455 0.48 -0.4
290,320 + CSW01_01455 0.48 -0.2
290,328 - CSW01_01455 0.49 +0.7
290,380 + CSW01_01455 0.56 -0.9
290,385 + CSW01_01455 0.57 +0.1
290,393 - CSW01_01455 0.58 -0.4
290,393 - CSW01_01455 0.58 -0.6
290,393 - CSW01_01455 0.58 -0.2
290,398 - CSW01_01455 0.59 +0.0
290,414 - CSW01_01455 0.62 +0.2
290,428 - CSW01_01455 0.64 +0.4
290,517 + CSW01_01455 0.77 +0.3
290,525 - CSW01_01455 0.78 +0.5
290,525 - CSW01_01455 0.78 -0.4
290,539 + CSW01_01455 0.80 -0.3
290,585 - CSW01_01455 0.87 -0.3
290,585 - CSW01_01455 0.87 -0.2
290,596 - CSW01_01455 0.88 -0.4
290,596 - CSW01_01455 0.88 -0.1
290,596 - CSW01_01455 0.88 +0.4
290,607 - -0.8
290,632 + +1.0
290,637 + +0.2
290,642 + -0.7
290,648 + -1.8
290,654 + +0.1
290,654 - -0.0
290,701 - -0.4
290,739 - +0.2
290,801 + +0.6
290,803 + +0.1
290,811 - -0.1
290,811 - +0.1
290,864 - +0.9
290,871 + +0.2
290,879 - +0.6
290,879 - -0.3
290,928 + CSW01_01460 0.11 +0.0
290,936 - CSW01_01460 0.12 +0.2
290,960 + CSW01_01460 0.13 +0.1
290,968 - CSW01_01460 0.13 -0.4
290,975 + CSW01_01460 0.14 -0.1
290,975 + CSW01_01460 0.14 +0.3
290,975 + CSW01_01460 0.14 -0.3
290,983 - CSW01_01460 0.14 -0.0
290,983 - CSW01_01460 0.14 +0.6
290,983 - CSW01_01460 0.14 -0.6
291,090 + CSW01_01460 0.19 +0.2
291,090 + CSW01_01460 0.19 -0.4
291,090 + CSW01_01460 0.19 +0.9
291,090 + CSW01_01460 0.19 -0.0
291,090 + CSW01_01460 0.19 +0.4
291,098 - CSW01_01460 0.20 -0.6
291,098 - CSW01_01460 0.20 -0.6
291,098 - CSW01_01460 0.20 -0.8
291,098 - CSW01_01460 0.20 +0.4
291,103 - CSW01_01460 0.20 -0.7
291,105 + CSW01_01460 0.20 -0.3
291,105 + CSW01_01460 0.20 +0.4
291,105 + CSW01_01460 0.20 -0.4
291,105 + CSW01_01460 0.20 -0.6
291,105 + CSW01_01460 0.20 +0.1
291,105 + CSW01_01460 0.20 -0.3
291,113 - CSW01_01460 0.20 -1.2
291,113 - CSW01_01460 0.20 +0.4
291,113 - CSW01_01460 0.20 -0.6
291,113 - CSW01_01460 0.20 -0.0
291,113 - CSW01_01460 0.20 -0.2
291,113 - CSW01_01460 0.20 -0.1
291,138 + CSW01_01460 0.22 -0.8
291,138 + CSW01_01460 0.22 +2.0
291,201 + CSW01_01460 0.25 -0.6
291,233 - CSW01_01460 0.26 +1.3
291,233 - CSW01_01460 0.26 +0.9
291,251 + CSW01_01460 0.27 +1.0
291,259 - CSW01_01460 0.28 -0.1
291,261 + CSW01_01460 0.28 -0.5
291,269 - CSW01_01460 0.28 -0.3
291,271 - CSW01_01460 0.28 -0.1
291,285 + CSW01_01460 0.29 -0.2
291,361 - CSW01_01460 0.33 +0.2
291,370 + CSW01_01460 0.33 -3.2
291,370 + CSW01_01460 0.33 +1.4
291,378 - CSW01_01460 0.33 +0.4
291,378 - CSW01_01460 0.33 -0.6
291,378 - CSW01_01460 0.33 -0.8
291,382 + CSW01_01460 0.34 +0.4
291,383 + CSW01_01460 0.34 -0.2
291,391 - CSW01_01460 0.34 -0.7
291,402 - CSW01_01460 0.35 +0.2
291,402 - CSW01_01460 0.35 +0.9
291,413 - CSW01_01460 0.35 -1.0
291,413 - CSW01_01460 0.35 +0.4
291,413 - CSW01_01460 0.35 -0.4
291,413 - CSW01_01460 0.35 -0.2
291,413 - CSW01_01460 0.35 -0.2
291,435 - CSW01_01460 0.36 +0.2
291,486 + CSW01_01460 0.39 -0.2
291,509 + CSW01_01460 0.40 +0.4
291,531 + CSW01_01460 0.41 +0.2
291,539 - CSW01_01460 0.41 -0.5
291,544 + CSW01_01460 0.42 -0.3
291,595 - CSW01_01460 0.44 -0.6
291,611 + CSW01_01460 0.45 -0.3
291,611 + CSW01_01460 0.45 +0.3
291,611 + CSW01_01460 0.45 +0.3
291,621 + CSW01_01460 0.45 -1.1
291,622 - CSW01_01460 0.45 -0.4
291,629 - CSW01_01460 0.46 -0.2
291,657 - CSW01_01460 0.47 -2.3

Or see this region's nucleotide sequence