Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00215

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00205 and CSW01_00210 are separated by 38 nucleotidesCSW01_00210 and CSW01_00215 overlap by 88 nucleotidesCSW01_00215 and CSW01_00220 are separated by 11 nucleotides CSW01_00205: CSW01_00205 - hemolysin III family protein, at 37,848 to 38,495 _00205 CSW01_00210: CSW01_00210 - DUF3157 domain-containing protein, at 38,534 to 39,190 _00210 CSW01_00215: CSW01_00215 - potassium uptake protein TrkH, at 39,103 to 40,548 _00215 CSW01_00220: CSW01_00220 - Trk system potassium transporter TrkA, at 40,560 to 41,936 _00220 Position (kb) 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.163 kb on + strand, within CSW01_00205at 38.171 kb on - strand, within CSW01_00205at 38.183 kb on - strand, within CSW01_00205at 38.183 kb on - strand, within CSW01_00205at 38.184 kb on + strand, within CSW01_00205at 38.187 kb on + strand, within CSW01_00205at 38.192 kb on - strand, within CSW01_00205at 38.205 kb on - strand, within CSW01_00205at 38.215 kb on - strand, within CSW01_00205at 38.328 kb on - strand, within CSW01_00205at 38.335 kb on + strand, within CSW01_00205at 38.358 kb on + strand, within CSW01_00205at 38.358 kb on + strand, within CSW01_00205at 38.431 kb on + strandat 38.431 kb on + strandat 38.439 kb on - strandat 38.439 kb on - strandat 38.441 kb on + strandat 38.587 kb on - strandat 38.593 kb on + strandat 38.593 kb on + strandat 38.594 kb on + strandat 38.594 kb on + strandat 38.601 kb on - strand, within CSW01_00210at 38.602 kb on - strand, within CSW01_00210at 38.617 kb on + strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.642 kb on + strand, within CSW01_00210at 38.694 kb on - strand, within CSW01_00210at 38.772 kb on + strand, within CSW01_00210at 38.775 kb on - strand, within CSW01_00210at 38.775 kb on - strand, within CSW01_00210at 38.777 kb on + strand, within CSW01_00210at 38.791 kb on + strand, within CSW01_00210at 38.888 kb on + strand, within CSW01_00210at 38.896 kb on - strand, within CSW01_00210at 38.909 kb on + strand, within CSW01_00210at 38.917 kb on - strand, within CSW01_00210at 38.917 kb on - strand, within CSW01_00210at 38.955 kb on + strand, within CSW01_00210at 39.009 kb on - strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.108 kb on - strandat 39.207 kb on - strandat 39.236 kb on + strandat 39.246 kb on + strandat 39.257 kb on + strand, within CSW01_00215at 39.265 kb on - strand, within CSW01_00215at 39.328 kb on + strand, within CSW01_00215at 39.347 kb on - strand, within CSW01_00215at 39.445 kb on - strand, within CSW01_00215at 39.446 kb on + strand, within CSW01_00215at 39.506 kb on - strand, within CSW01_00215at 39.520 kb on - strand, within CSW01_00215at 39.522 kb on - strand, within CSW01_00215at 39.522 kb on - strand, within CSW01_00215at 39.560 kb on + strand, within CSW01_00215at 39.629 kb on + strand, within CSW01_00215at 39.637 kb on - strand, within CSW01_00215at 39.687 kb on + strand, within CSW01_00215at 39.693 kb on - strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.757 kb on - strand, within CSW01_00215at 39.757 kb on - strand, within CSW01_00215at 39.757 kb on - strand, within CSW01_00215at 39.757 kb on - strand, within CSW01_00215at 39.796 kb on + strand, within CSW01_00215at 39.833 kb on + strand, within CSW01_00215at 39.833 kb on + strand, within CSW01_00215at 39.833 kb on + strand, within CSW01_00215at 39.846 kb on - strand, within CSW01_00215at 39.873 kb on + strand, within CSW01_00215at 39.877 kb on + strand, within CSW01_00215at 39.940 kb on + strand, within CSW01_00215at 40.036 kb on + strand, within CSW01_00215at 40.036 kb on + strand, within CSW01_00215at 40.036 kb on + strand, within CSW01_00215at 40.036 kb on + strand, within CSW01_00215at 40.040 kb on - strand, within CSW01_00215at 40.044 kb on - strand, within CSW01_00215at 40.074 kb on + strand, within CSW01_00215at 40.081 kb on - strand, within CSW01_00215at 40.088 kb on + strand, within CSW01_00215at 40.130 kb on - strand, within CSW01_00215at 40.196 kb on + strand, within CSW01_00215at 40.206 kb on + strand, within CSW01_00215at 40.211 kb on - strand, within CSW01_00215at 40.211 kb on - strand, within CSW01_00215at 40.263 kb on - strand, within CSW01_00215at 40.481 kb on + strandat 40.491 kb on + strandat 40.504 kb on - strandat 40.506 kb on + strandat 40.506 kb on + strandat 40.506 kb on + strandat 40.514 kb on - strandat 40.514 kb on - strandat 40.524 kb on + strandat 40.548 kb on - strandat 40.558 kb on - strandat 40.558 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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38,128 + CSW01_00205 0.43 +1.8
38,128 + CSW01_00205 0.43 -0.3
38,128 + CSW01_00205 0.43 -0.2
38,128 + CSW01_00205 0.43 +0.0
38,128 + CSW01_00205 0.43 +0.3
38,136 - CSW01_00205 0.44 -0.6
38,136 - CSW01_00205 0.44 -0.3
38,136 - CSW01_00205 0.44 +0.3
38,136 - CSW01_00205 0.44 -0.4
38,136 - CSW01_00205 0.44 +0.2
38,163 + CSW01_00205 0.49 +0.2
38,171 - CSW01_00205 0.50 -1.0
38,183 - CSW01_00205 0.52 -0.6
38,183 - CSW01_00205 0.52 -0.2
38,184 + CSW01_00205 0.52 +0.1
38,187 + CSW01_00205 0.52 -0.1
38,192 - CSW01_00205 0.53 +0.5
38,205 - CSW01_00205 0.55 +1.9
38,215 - CSW01_00205 0.57 -0.3
38,328 - CSW01_00205 0.74 +1.0
38,335 + CSW01_00205 0.75 -0.2
38,358 + CSW01_00205 0.79 +1.8
38,358 + CSW01_00205 0.79 +0.2
38,431 + -0.7
38,431 + +1.0
38,439 - -0.2
38,439 - +0.3
38,441 + +0.1
38,587 - -0.1
38,593 + +1.5
38,593 + +1.2
38,594 + -1.4
38,594 + -0.7
38,601 - CSW01_00210 0.10 +0.6
38,602 - CSW01_00210 0.10 +0.9
38,617 + CSW01_00210 0.13 +0.6
38,625 - CSW01_00210 0.14 -0.7
38,625 - CSW01_00210 0.14 -0.5
38,625 - CSW01_00210 0.14 +0.6
38,625 - CSW01_00210 0.14 +0.5
38,625 - CSW01_00210 0.14 -1.3
38,642 + CSW01_00210 0.16 +0.3
38,694 - CSW01_00210 0.24 +0.5
38,772 + CSW01_00210 0.36 +0.4
38,775 - CSW01_00210 0.37 -0.9
38,775 - CSW01_00210 0.37 +0.5
38,777 + CSW01_00210 0.37 +0.8
38,791 + CSW01_00210 0.39 +0.6
38,888 + CSW01_00210 0.54 -0.1
38,896 - CSW01_00210 0.55 -0.6
38,909 + CSW01_00210 0.57 -0.2
38,917 - CSW01_00210 0.58 -0.5
38,917 - CSW01_00210 0.58 +0.6
38,955 + CSW01_00210 0.64 +0.4
39,009 - CSW01_00210 0.72 -0.1
39,018 + CSW01_00210 0.74 -0.2
39,018 + CSW01_00210 0.74 -0.2
39,018 + CSW01_00210 0.74 +0.0
39,018 + CSW01_00210 0.74 +0.2
39,018 + CSW01_00210 0.74 +0.4
39,018 + CSW01_00210 0.74 +0.7
39,026 - CSW01_00210 0.75 -0.0
39,026 - CSW01_00210 0.75 -0.8
39,026 - CSW01_00210 0.75 +0.2
39,026 - CSW01_00210 0.75 -0.5
39,026 - CSW01_00210 0.75 +0.8
39,108 - -0.1
39,207 - +0.1
39,236 + +0.3
39,246 + -1.5
39,257 + CSW01_00215 0.11 -1.1
39,265 - CSW01_00215 0.11 -0.3
39,328 + CSW01_00215 0.16 +0.8
39,347 - CSW01_00215 0.17 -0.9
39,445 - CSW01_00215 0.24 +0.2
39,446 + CSW01_00215 0.24 +0.5
39,506 - CSW01_00215 0.28 -0.3
39,520 - CSW01_00215 0.29 -0.2
39,522 - CSW01_00215 0.29 -0.7
39,522 - CSW01_00215 0.29 -3.2
39,560 + CSW01_00215 0.32 +1.7
39,629 + CSW01_00215 0.36 -1.3
39,637 - CSW01_00215 0.37 -0.5
39,687 + CSW01_00215 0.40 +1.5
39,693 - CSW01_00215 0.41 -0.8
39,749 + CSW01_00215 0.45 -0.5
39,749 + CSW01_00215 0.45 -0.7
39,749 + CSW01_00215 0.45 +0.7
39,749 + CSW01_00215 0.45 -0.4
39,749 + CSW01_00215 0.45 +0.1
39,757 - CSW01_00215 0.45 -0.5
39,757 - CSW01_00215 0.45 -0.6
39,757 - CSW01_00215 0.45 -0.7
39,757 - CSW01_00215 0.45 +0.9
39,796 + CSW01_00215 0.48 +0.0
39,833 + CSW01_00215 0.50 -1.0
39,833 + CSW01_00215 0.50 -0.9
39,833 + CSW01_00215 0.50 -0.8
39,846 - CSW01_00215 0.51 -0.6
39,873 + CSW01_00215 0.53 +1.2
39,877 + CSW01_00215 0.54 +0.5
39,940 + CSW01_00215 0.58 +0.1
40,036 + CSW01_00215 0.65 -0.6
40,036 + CSW01_00215 0.65 +0.2
40,036 + CSW01_00215 0.65 +1.0
40,036 + CSW01_00215 0.65 -1.1
40,040 - CSW01_00215 0.65 -1.5
40,044 - CSW01_00215 0.65 -0.3
40,074 + CSW01_00215 0.67 -0.2
40,081 - CSW01_00215 0.68 -0.4
40,088 + CSW01_00215 0.68 -0.8
40,130 - CSW01_00215 0.71 +2.5
40,196 + CSW01_00215 0.76 +0.3
40,206 + CSW01_00215 0.76 -0.7
40,211 - CSW01_00215 0.77 -0.4
40,211 - CSW01_00215 0.77 -0.0
40,263 - CSW01_00215 0.80 -0.4
40,481 + -1.9
40,491 + +0.6
40,504 - -1.3
40,506 + +0.7
40,506 + +0.5
40,506 + +0.5
40,514 - +0.3
40,514 - +0.3
40,524 + -2.0
40,548 - -0.9
40,558 - -0.8
40,558 - +0.3

Or see this region's nucleotide sequence