Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00040 and CSW01_00045 overlap by 4 nucleotides CSW01_00045 and CSW01_00050 are separated by 77 nucleotides CSW01_00050 and CSW01_00055 are separated by 311 nucleotides
CSW01_00040: CSW01_00040 - amino acid ABC transporter ATP-binding protein, at 4,871 to 5,608
_00040
CSW01_00045: CSW01_00045 - amino acid ABC transporter permease, at 5,605 to 6,276
_00045
CSW01_00050: CSW01_00050 - amino acid ABC transporter substrate-binding protein, at 6,354 to 7,100
_00050
CSW01_00055: CSW01_00055 - chromosomal replication initiator protein DnaA, at 7,412 to 8,815
_00055
Position (kb)
6
7
8 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5.386 kb on + strand, within CSW01_00040 at 5.441 kb on + strand, within CSW01_00040 at 5.449 kb on - strand, within CSW01_00040 at 5.463 kb on - strand, within CSW01_00040 at 5.474 kb on + strand, within CSW01_00040 at 5.474 kb on + strand, within CSW01_00040 at 5.474 kb on + strand, within CSW01_00040 at 5.474 kb on + strand, within CSW01_00040 at 5.474 kb on + strand, within CSW01_00040 at 5.474 kb on + strand, within CSW01_00040 at 5.479 kb on + strand, within CSW01_00040 at 5.479 kb on + strand, within CSW01_00040 at 5.482 kb on - strand, within CSW01_00040 at 5.485 kb on - strand, within CSW01_00040 at 5.486 kb on + strand, within CSW01_00040 at 5.492 kb on + strand, within CSW01_00040 at 5.571 kb on + strand at 5.639 kb on + strand at 5.639 kb on + strand at 5.639 kb on + strand at 5.639 kb on + strand at 5.647 kb on - strand at 5.647 kb on - strand at 5.647 kb on - strand at 5.683 kb on + strand, within CSW01_00045 at 5.732 kb on + strand, within CSW01_00045 at 5.732 kb on + strand, within CSW01_00045 at 5.740 kb on - strand, within CSW01_00045 at 5.750 kb on + strand, within CSW01_00045 at 5.772 kb on + strand, within CSW01_00045 at 5.772 kb on + strand, within CSW01_00045 at 5.772 kb on + strand, within CSW01_00045 at 5.772 kb on + strand, within CSW01_00045 at 5.772 kb on + strand, within CSW01_00045 at 5.772 kb on + strand, within CSW01_00045 at 5.772 kb on + strand, within CSW01_00045 at 5.773 kb on + strand, within CSW01_00045 at 5.779 kb on + strand, within CSW01_00045 at 5.780 kb on - strand, within CSW01_00045 at 5.780 kb on - strand, within CSW01_00045 at 5.780 kb on - strand, within CSW01_00045 at 5.780 kb on - strand, within CSW01_00045 at 5.780 kb on - strand, within CSW01_00045 at 5.780 kb on - strand, within CSW01_00045 at 5.830 kb on - strand, within CSW01_00045 at 5.830 kb on - strand, within CSW01_00045 at 5.835 kb on - strand, within CSW01_00045 at 5.835 kb on - strand, within CSW01_00045 at 5.835 kb on - strand, within CSW01_00045 at 5.840 kb on + strand, within CSW01_00045 at 5.874 kb on + strand, within CSW01_00045 at 5.882 kb on - strand, within CSW01_00045 at 5.911 kb on + strand, within CSW01_00045 at 5.922 kb on + strand, within CSW01_00045 at 5.922 kb on + strand, within CSW01_00045 at 5.922 kb on + strand, within CSW01_00045 at 5.987 kb on - strand, within CSW01_00045 at 5.989 kb on + strand, within CSW01_00045 at 5.994 kb on + strand, within CSW01_00045 at 5.994 kb on + strand, within CSW01_00045 at 5.997 kb on - strand, within CSW01_00045 at 5.999 kb on + strand, within CSW01_00045 at 6.002 kb on - strand, within CSW01_00045 at 6.007 kb on - strand, within CSW01_00045 at 6.009 kb on + strand, within CSW01_00045 at 6.017 kb on - strand, within CSW01_00045 at 6.022 kb on - strand, within CSW01_00045 at 6.036 kb on - strand, within CSW01_00045 at 6.111 kb on + strand, within CSW01_00045 at 6.111 kb on + strand, within CSW01_00045 at 6.111 kb on + strand, within CSW01_00045 at 6.111 kb on + strand, within CSW01_00045 at 6.111 kb on + strand, within CSW01_00045 at 6.111 kb on + strand, within CSW01_00045 at 6.119 kb on - strand, within CSW01_00045 at 6.119 kb on - strand, within CSW01_00045 at 6.119 kb on - strand, within CSW01_00045 at 6.119 kb on - strand, within CSW01_00045 at 6.119 kb on - strand, within CSW01_00045 at 6.119 kb on - strand, within CSW01_00045 at 6.119 kb on - strand, within CSW01_00045 at 6.119 kb on - strand, within CSW01_00045 at 6.119 kb on - strand, within CSW01_00045 at 6.121 kb on + strand, within CSW01_00045 at 6.163 kb on - strand, within CSW01_00045 at 6.163 kb on - strand, within CSW01_00045 at 6.212 kb on + strand at 6.246 kb on + strand at 6.254 kb on - strand at 6.254 kb on - strand at 6.254 kb on - strand at 6.273 kb on - strand at 6.296 kb on + strand at 6.311 kb on + strand at 6.312 kb on + strand at 6.312 kb on + strand at 6.326 kb on + strand at 6.331 kb on + strand at 6.332 kb on + strand at 6.378 kb on - strand at 6.386 kb on - strand at 6.444 kb on + strand, within CSW01_00050 at 6.527 kb on + strand, within CSW01_00050 at 6.584 kb on + strand, within CSW01_00050 at 6.594 kb on + strand, within CSW01_00050 at 6.594 kb on + strand, within CSW01_00050 at 6.594 kb on + strand, within CSW01_00050 at 6.594 kb on + strand, within CSW01_00050 at 6.594 kb on + strand, within CSW01_00050 at 6.594 kb on + strand, within CSW01_00050 at 6.594 kb on + strand, within CSW01_00050 at 6.594 kb on + strand, within CSW01_00050 at 6.594 kb on + strand, within CSW01_00050 at 6.596 kb on - strand, within CSW01_00050 at 6.602 kb on - strand, within CSW01_00050 at 6.602 kb on - strand, within CSW01_00050 at 6.602 kb on - strand, within CSW01_00050 at 6.602 kb on - strand, within CSW01_00050 at 6.602 kb on - strand, within CSW01_00050 at 6.602 kb on - strand, within CSW01_00050 at 6.602 kb on - strand, within CSW01_00050 at 6.602 kb on - strand, within CSW01_00050 at 6.602 kb on - strand, within CSW01_00050 at 6.602 kb on - strand, within CSW01_00050 at 6.602 kb on - strand, within CSW01_00050 at 6.602 kb on - strand, within CSW01_00050 at 6.639 kb on - strand, within CSW01_00050 at 6.685 kb on - strand, within CSW01_00050 at 6.758 kb on - strand, within CSW01_00050 at 6.775 kb on + strand, within CSW01_00050 at 6.775 kb on + strand, within CSW01_00050 at 6.783 kb on - strand, within CSW01_00050 at 6.806 kb on + strand, within CSW01_00050 at 6.819 kb on - strand, within CSW01_00050 at 6.847 kb on - strand, within CSW01_00050 at 6.860 kb on + strand, within CSW01_00050 at 6.865 kb on + strand, within CSW01_00050 at 6.865 kb on + strand, within CSW01_00050 at 6.865 kb on + strand, within CSW01_00050 at 6.865 kb on + strand, within CSW01_00050 at 6.873 kb on - strand, within CSW01_00050 at 6.873 kb on - strand, within CSW01_00050 at 6.953 kb on - strand, within CSW01_00050 at 6.956 kb on + strand, within CSW01_00050 at 6.956 kb on + strand, within CSW01_00050 at 6.956 kb on + strand, within CSW01_00050 at 6.956 kb on + strand, within CSW01_00050 at 6.963 kb on + strand, within CSW01_00050 at 6.964 kb on - strand, within CSW01_00050 at 6.964 kb on - strand, within CSW01_00050 at 6.964 kb on - strand, within CSW01_00050 at 6.971 kb on - strand, within CSW01_00050 at 6.990 kb on + strand, within CSW01_00050 at 6.990 kb on + strand, within CSW01_00050 at 6.998 kb on - strand, within CSW01_00050 at 6.998 kb on - strand, within CSW01_00050 at 6.998 kb on - strand, within CSW01_00050 at 7.047 kb on - strand at 7.069 kb on - strand at 7.070 kb on - strand at 7.231 kb on + strand at 7.257 kb on + strand at 7.306 kb on + strand at 7.333 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B remove 5,386 + CSW01_00040 0.70 +0.0 5,441 + CSW01_00040 0.77 -0.8 5,449 - CSW01_00040 0.78 -0.2 5,463 - CSW01_00040 0.80 -1.1 5,474 + CSW01_00040 0.82 -1.0 5,474 + CSW01_00040 0.82 -0.2 5,474 + CSW01_00040 0.82 -1.3 5,474 + CSW01_00040 0.82 +0.1 5,474 + CSW01_00040 0.82 +0.7 5,474 + CSW01_00040 0.82 +0.1 5,479 + CSW01_00040 0.82 -0.5 5,479 + CSW01_00040 0.82 +0.2 5,482 - CSW01_00040 0.83 +1.8 5,485 - CSW01_00040 0.83 -0.3 5,486 + CSW01_00040 0.83 -0.5 5,492 + CSW01_00040 0.84 +0.2 5,571 + -0.4 5,639 + +2.1 5,639 + -0.3 5,639 + -0.5 5,639 + +0.9 5,647 - +1.7 5,647 - +1.1 5,647 - -0.1 5,683 + CSW01_00045 0.12 -0.1 5,732 + CSW01_00045 0.19 -0.2 5,732 + CSW01_00045 0.19 -2.3 5,740 - CSW01_00045 0.20 -0.4 5,750 + CSW01_00045 0.22 +0.1 5,772 + CSW01_00045 0.25 -0.2 5,772 + CSW01_00045 0.25 +1.0 5,772 + CSW01_00045 0.25 -0.0 5,772 + CSW01_00045 0.25 -0.2 5,772 + CSW01_00045 0.25 -1.0 5,772 + CSW01_00045 0.25 -0.7 5,772 + CSW01_00045 0.25 +0.9 5,773 + CSW01_00045 0.25 +0.5 5,779 + CSW01_00045 0.26 -0.2 5,780 - CSW01_00045 0.26 +0.5 5,780 - CSW01_00045 0.26 +0.3 5,780 - CSW01_00045 0.26 +2.5 5,780 - CSW01_00045 0.26 +0.2 5,780 - CSW01_00045 0.26 -0.1 5,780 - CSW01_00045 0.26 -1.2 5,830 - CSW01_00045 0.33 +0.7 5,830 - CSW01_00045 0.33 -0.0 5,835 - CSW01_00045 0.34 -0.7 5,835 - CSW01_00045 0.34 +0.3 5,835 - CSW01_00045 0.34 +0.2 5,840 + CSW01_00045 0.35 +0.2 5,874 + CSW01_00045 0.40 -0.1 5,882 - CSW01_00045 0.41 +0.0 5,911 + CSW01_00045 0.46 +0.1 5,922 + CSW01_00045 0.47 +0.3 5,922 + CSW01_00045 0.47 +0.5 5,922 + CSW01_00045 0.47 -1.3 5,987 - CSW01_00045 0.57 +0.5 5,989 + CSW01_00045 0.57 +0.3 5,994 + CSW01_00045 0.58 +0.2 5,994 + CSW01_00045 0.58 +0.6 5,997 - CSW01_00045 0.58 -0.0 5,999 + CSW01_00045 0.59 -0.0 6,002 - CSW01_00045 0.59 -0.5 6,007 - CSW01_00045 0.60 -0.3 6,009 + CSW01_00045 0.60 -0.1 6,017 - CSW01_00045 0.61 +0.3 6,022 - CSW01_00045 0.62 -0.2 6,036 - CSW01_00045 0.64 -1.8 6,111 + CSW01_00045 0.75 -0.8 6,111 + CSW01_00045 0.75 -0.7 6,111 + CSW01_00045 0.75 +0.5 6,111 + CSW01_00045 0.75 -0.3 6,111 + CSW01_00045 0.75 -0.0 6,111 + CSW01_00045 0.75 -0.4 6,119 - CSW01_00045 0.76 -0.4 6,119 - CSW01_00045 0.76 -0.0 6,119 - CSW01_00045 0.76 -1.1 6,119 - CSW01_00045 0.76 -0.4 6,119 - CSW01_00045 0.76 +0.5 6,119 - CSW01_00045 0.76 -0.7 6,119 - CSW01_00045 0.76 +1.2 6,119 - CSW01_00045 0.76 +0.4 6,119 - CSW01_00045 0.76 +0.2 6,121 + CSW01_00045 0.77 +0.1 6,163 - CSW01_00045 0.83 +0.1 6,163 - CSW01_00045 0.83 -0.4 6,212 + -0.6 6,246 + -0.3 6,254 - +0.1 6,254 - -0.2 6,254 - +2.5 6,273 - +0.4 6,296 + +0.1 6,311 + -0.1 6,312 + +0.4 6,312 + -0.1 6,326 + -0.3 6,331 + +0.6 6,332 + -0.7 6,378 - +0.1 6,386 - +0.5 6,444 + CSW01_00050 0.12 +0.1 6,527 + CSW01_00050 0.23 +0.8 6,584 + CSW01_00050 0.31 +0.2 6,594 + CSW01_00050 0.32 -0.2 6,594 + CSW01_00050 0.32 -0.2 6,594 + CSW01_00050 0.32 +0.9 6,594 + CSW01_00050 0.32 -0.2 6,594 + CSW01_00050 0.32 +0.5 6,594 + CSW01_00050 0.32 -0.3 6,594 + CSW01_00050 0.32 -0.0 6,594 + CSW01_00050 0.32 -0.6 6,594 + CSW01_00050 0.32 -0.1 6,596 - CSW01_00050 0.32 +0.5 6,602 - CSW01_00050 0.33 -0.8 6,602 - CSW01_00050 0.33 +0.7 6,602 - CSW01_00050 0.33 +0.7 6,602 - CSW01_00050 0.33 -0.9 6,602 - CSW01_00050 0.33 -0.4 6,602 - CSW01_00050 0.33 +0.1 6,602 - CSW01_00050 0.33 -2.0 6,602 - CSW01_00050 0.33 -1.7 6,602 - CSW01_00050 0.33 +0.1 6,602 - CSW01_00050 0.33 -0.8 6,602 - CSW01_00050 0.33 -0.2 6,602 - CSW01_00050 0.33 -0.1 6,639 - CSW01_00050 0.38 -0.6 6,685 - CSW01_00050 0.44 +0.8 6,758 - CSW01_00050 0.54 -0.3 6,775 + CSW01_00050 0.56 +0.1 6,775 + CSW01_00050 0.56 -1.2 6,783 - CSW01_00050 0.57 -0.6 6,806 + CSW01_00050 0.61 -0.2 6,819 - CSW01_00050 0.62 -0.2 6,847 - CSW01_00050 0.66 -0.6 6,860 + CSW01_00050 0.68 -0.3 6,865 + CSW01_00050 0.68 -0.2 6,865 + CSW01_00050 0.68 -1.0 6,865 + CSW01_00050 0.68 -0.0 6,865 + CSW01_00050 0.68 -0.6 6,873 - CSW01_00050 0.69 +0.6 6,873 - CSW01_00050 0.69 -0.4 6,953 - CSW01_00050 0.80 -0.5 6,956 + CSW01_00050 0.81 +0.3 6,956 + CSW01_00050 0.81 +0.4 6,956 + CSW01_00050 0.81 +0.3 6,956 + CSW01_00050 0.81 -0.3 6,963 + CSW01_00050 0.82 -0.1 6,964 - CSW01_00050 0.82 +0.5 6,964 - CSW01_00050 0.82 -0.1 6,964 - CSW01_00050 0.82 +0.5 6,971 - CSW01_00050 0.83 -0.7 6,990 + CSW01_00050 0.85 +0.3 6,990 + CSW01_00050 0.85 +0.4 6,998 - CSW01_00050 0.86 +0.7 6,998 - CSW01_00050 0.86 +0.6 6,998 - CSW01_00050 0.86 -0.7 7,047 - -0.4 7,069 - +0.9 7,070 - -0.6 7,231 + +1.5 7,257 + +0.2 7,306 + +0.1 7,333 + -0.8
Or see this region's nucleotide sequence