Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00050

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00040 and CSW01_00045 overlap by 4 nucleotidesCSW01_00045 and CSW01_00050 are separated by 77 nucleotidesCSW01_00050 and CSW01_00055 are separated by 311 nucleotides CSW01_00040: CSW01_00040 - amino acid ABC transporter ATP-binding protein, at 4,871 to 5,608 _00040 CSW01_00045: CSW01_00045 - amino acid ABC transporter permease, at 5,605 to 6,276 _00045 CSW01_00050: CSW01_00050 - amino acid ABC transporter substrate-binding protein, at 6,354 to 7,100 _00050 CSW01_00055: CSW01_00055 - chromosomal replication initiator protein DnaA, at 7,412 to 8,815 _00055 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 5.386 kb on + strand, within CSW01_00040at 5.441 kb on + strand, within CSW01_00040at 5.449 kb on - strand, within CSW01_00040at 5.463 kb on - strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.474 kb on + strand, within CSW01_00040at 5.479 kb on + strand, within CSW01_00040at 5.479 kb on + strand, within CSW01_00040at 5.482 kb on - strand, within CSW01_00040at 5.485 kb on - strand, within CSW01_00040at 5.486 kb on + strand, within CSW01_00040at 5.492 kb on + strand, within CSW01_00040at 5.571 kb on + strandat 5.639 kb on + strandat 5.639 kb on + strandat 5.639 kb on + strandat 5.639 kb on + strandat 5.647 kb on - strandat 5.647 kb on - strandat 5.647 kb on - strandat 5.683 kb on + strand, within CSW01_00045at 5.732 kb on + strand, within CSW01_00045at 5.732 kb on + strand, within CSW01_00045at 5.740 kb on - strand, within CSW01_00045at 5.750 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.772 kb on + strand, within CSW01_00045at 5.773 kb on + strand, within CSW01_00045at 5.779 kb on + strand, within CSW01_00045at 5.780 kb on - strand, within CSW01_00045at 5.780 kb on - strand, within CSW01_00045at 5.780 kb on - strand, within CSW01_00045at 5.780 kb on - strand, within CSW01_00045at 5.780 kb on - strand, within CSW01_00045at 5.780 kb on - strand, within CSW01_00045at 5.830 kb on - strand, within CSW01_00045at 5.830 kb on - strand, within CSW01_00045at 5.835 kb on - strand, within CSW01_00045at 5.835 kb on - strand, within CSW01_00045at 5.835 kb on - strand, within CSW01_00045at 5.840 kb on + strand, within CSW01_00045at 5.874 kb on + strand, within CSW01_00045at 5.882 kb on - strand, within CSW01_00045at 5.911 kb on + strand, within CSW01_00045at 5.922 kb on + strand, within CSW01_00045at 5.922 kb on + strand, within CSW01_00045at 5.922 kb on + strand, within CSW01_00045at 5.987 kb on - strand, within CSW01_00045at 5.989 kb on + strand, within CSW01_00045at 5.994 kb on + strand, within CSW01_00045at 5.994 kb on + strand, within CSW01_00045at 5.997 kb on - strand, within CSW01_00045at 5.999 kb on + strand, within CSW01_00045at 6.002 kb on - strand, within CSW01_00045at 6.007 kb on - strand, within CSW01_00045at 6.009 kb on + strand, within CSW01_00045at 6.017 kb on - strand, within CSW01_00045at 6.022 kb on - strand, within CSW01_00045at 6.036 kb on - strand, within CSW01_00045at 6.111 kb on + strand, within CSW01_00045at 6.111 kb on + strand, within CSW01_00045at 6.111 kb on + strand, within CSW01_00045at 6.111 kb on + strand, within CSW01_00045at 6.111 kb on + strand, within CSW01_00045at 6.111 kb on + strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.119 kb on - strand, within CSW01_00045at 6.121 kb on + strand, within CSW01_00045at 6.163 kb on - strand, within CSW01_00045at 6.163 kb on - strand, within CSW01_00045at 6.212 kb on + strandat 6.246 kb on + strandat 6.254 kb on - strandat 6.254 kb on - strandat 6.254 kb on - strandat 6.273 kb on - strandat 6.296 kb on + strandat 6.311 kb on + strandat 6.312 kb on + strandat 6.312 kb on + strandat 6.326 kb on + strandat 6.331 kb on + strandat 6.332 kb on + strandat 6.378 kb on - strandat 6.386 kb on - strandat 6.444 kb on + strand, within CSW01_00050at 6.527 kb on + strand, within CSW01_00050at 6.584 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.594 kb on + strand, within CSW01_00050at 6.596 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.602 kb on - strand, within CSW01_00050at 6.639 kb on - strand, within CSW01_00050at 6.685 kb on - strand, within CSW01_00050at 6.758 kb on - strand, within CSW01_00050at 6.775 kb on + strand, within CSW01_00050at 6.775 kb on + strand, within CSW01_00050at 6.783 kb on - strand, within CSW01_00050at 6.806 kb on + strand, within CSW01_00050at 6.819 kb on - strand, within CSW01_00050at 6.847 kb on - strand, within CSW01_00050at 6.860 kb on + strand, within CSW01_00050at 6.865 kb on + strand, within CSW01_00050at 6.865 kb on + strand, within CSW01_00050at 6.865 kb on + strand, within CSW01_00050at 6.865 kb on + strand, within CSW01_00050at 6.873 kb on - strand, within CSW01_00050at 6.873 kb on - strand, within CSW01_00050at 6.953 kb on - strand, within CSW01_00050at 6.956 kb on + strand, within CSW01_00050at 6.956 kb on + strand, within CSW01_00050at 6.956 kb on + strand, within CSW01_00050at 6.956 kb on + strand, within CSW01_00050at 6.963 kb on + strand, within CSW01_00050at 6.964 kb on - strand, within CSW01_00050at 6.964 kb on - strand, within CSW01_00050at 6.964 kb on - strand, within CSW01_00050at 6.971 kb on - strand, within CSW01_00050at 6.990 kb on + strand, within CSW01_00050at 6.990 kb on + strand, within CSW01_00050at 6.998 kb on - strand, within CSW01_00050at 6.998 kb on - strand, within CSW01_00050at 6.998 kb on - strand, within CSW01_00050at 7.047 kb on - strandat 7.069 kb on - strandat 7.070 kb on - strandat 7.231 kb on + strandat 7.257 kb on + strandat 7.306 kb on + strandat 7.333 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
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5,386 + CSW01_00040 0.70 +0.0
5,441 + CSW01_00040 0.77 -0.8
5,449 - CSW01_00040 0.78 -0.2
5,463 - CSW01_00040 0.80 -1.1
5,474 + CSW01_00040 0.82 -1.0
5,474 + CSW01_00040 0.82 -0.2
5,474 + CSW01_00040 0.82 -1.3
5,474 + CSW01_00040 0.82 +0.1
5,474 + CSW01_00040 0.82 +0.7
5,474 + CSW01_00040 0.82 +0.1
5,479 + CSW01_00040 0.82 -0.5
5,479 + CSW01_00040 0.82 +0.2
5,482 - CSW01_00040 0.83 +1.8
5,485 - CSW01_00040 0.83 -0.3
5,486 + CSW01_00040 0.83 -0.5
5,492 + CSW01_00040 0.84 +0.2
5,571 + -0.4
5,639 + +2.1
5,639 + -0.3
5,639 + -0.5
5,639 + +0.9
5,647 - +1.7
5,647 - +1.1
5,647 - -0.1
5,683 + CSW01_00045 0.12 -0.1
5,732 + CSW01_00045 0.19 -0.2
5,732 + CSW01_00045 0.19 -2.3
5,740 - CSW01_00045 0.20 -0.4
5,750 + CSW01_00045 0.22 +0.1
5,772 + CSW01_00045 0.25 -0.2
5,772 + CSW01_00045 0.25 +1.0
5,772 + CSW01_00045 0.25 -0.0
5,772 + CSW01_00045 0.25 -0.2
5,772 + CSW01_00045 0.25 -1.0
5,772 + CSW01_00045 0.25 -0.7
5,772 + CSW01_00045 0.25 +0.9
5,773 + CSW01_00045 0.25 +0.5
5,779 + CSW01_00045 0.26 -0.2
5,780 - CSW01_00045 0.26 +0.5
5,780 - CSW01_00045 0.26 +0.3
5,780 - CSW01_00045 0.26 +2.5
5,780 - CSW01_00045 0.26 +0.2
5,780 - CSW01_00045 0.26 -0.1
5,780 - CSW01_00045 0.26 -1.2
5,830 - CSW01_00045 0.33 +0.7
5,830 - CSW01_00045 0.33 -0.0
5,835 - CSW01_00045 0.34 -0.7
5,835 - CSW01_00045 0.34 +0.3
5,835 - CSW01_00045 0.34 +0.2
5,840 + CSW01_00045 0.35 +0.2
5,874 + CSW01_00045 0.40 -0.1
5,882 - CSW01_00045 0.41 +0.0
5,911 + CSW01_00045 0.46 +0.1
5,922 + CSW01_00045 0.47 +0.3
5,922 + CSW01_00045 0.47 +0.5
5,922 + CSW01_00045 0.47 -1.3
5,987 - CSW01_00045 0.57 +0.5
5,989 + CSW01_00045 0.57 +0.3
5,994 + CSW01_00045 0.58 +0.2
5,994 + CSW01_00045 0.58 +0.6
5,997 - CSW01_00045 0.58 -0.0
5,999 + CSW01_00045 0.59 -0.0
6,002 - CSW01_00045 0.59 -0.5
6,007 - CSW01_00045 0.60 -0.3
6,009 + CSW01_00045 0.60 -0.1
6,017 - CSW01_00045 0.61 +0.3
6,022 - CSW01_00045 0.62 -0.2
6,036 - CSW01_00045 0.64 -1.8
6,111 + CSW01_00045 0.75 -0.8
6,111 + CSW01_00045 0.75 -0.7
6,111 + CSW01_00045 0.75 +0.5
6,111 + CSW01_00045 0.75 -0.3
6,111 + CSW01_00045 0.75 -0.0
6,111 + CSW01_00045 0.75 -0.4
6,119 - CSW01_00045 0.76 -0.4
6,119 - CSW01_00045 0.76 -0.0
6,119 - CSW01_00045 0.76 -1.1
6,119 - CSW01_00045 0.76 -0.4
6,119 - CSW01_00045 0.76 +0.5
6,119 - CSW01_00045 0.76 -0.7
6,119 - CSW01_00045 0.76 +1.2
6,119 - CSW01_00045 0.76 +0.4
6,119 - CSW01_00045 0.76 +0.2
6,121 + CSW01_00045 0.77 +0.1
6,163 - CSW01_00045 0.83 +0.1
6,163 - CSW01_00045 0.83 -0.4
6,212 + -0.6
6,246 + -0.3
6,254 - +0.1
6,254 - -0.2
6,254 - +2.5
6,273 - +0.4
6,296 + +0.1
6,311 + -0.1
6,312 + +0.4
6,312 + -0.1
6,326 + -0.3
6,331 + +0.6
6,332 + -0.7
6,378 - +0.1
6,386 - +0.5
6,444 + CSW01_00050 0.12 +0.1
6,527 + CSW01_00050 0.23 +0.8
6,584 + CSW01_00050 0.31 +0.2
6,594 + CSW01_00050 0.32 -0.2
6,594 + CSW01_00050 0.32 -0.2
6,594 + CSW01_00050 0.32 +0.9
6,594 + CSW01_00050 0.32 -0.2
6,594 + CSW01_00050 0.32 +0.5
6,594 + CSW01_00050 0.32 -0.3
6,594 + CSW01_00050 0.32 -0.0
6,594 + CSW01_00050 0.32 -0.6
6,594 + CSW01_00050 0.32 -0.1
6,596 - CSW01_00050 0.32 +0.5
6,602 - CSW01_00050 0.33 -0.8
6,602 - CSW01_00050 0.33 +0.7
6,602 - CSW01_00050 0.33 +0.7
6,602 - CSW01_00050 0.33 -0.9
6,602 - CSW01_00050 0.33 -0.4
6,602 - CSW01_00050 0.33 +0.1
6,602 - CSW01_00050 0.33 -2.0
6,602 - CSW01_00050 0.33 -1.7
6,602 - CSW01_00050 0.33 +0.1
6,602 - CSW01_00050 0.33 -0.8
6,602 - CSW01_00050 0.33 -0.2
6,602 - CSW01_00050 0.33 -0.1
6,639 - CSW01_00050 0.38 -0.6
6,685 - CSW01_00050 0.44 +0.8
6,758 - CSW01_00050 0.54 -0.3
6,775 + CSW01_00050 0.56 +0.1
6,775 + CSW01_00050 0.56 -1.2
6,783 - CSW01_00050 0.57 -0.6
6,806 + CSW01_00050 0.61 -0.2
6,819 - CSW01_00050 0.62 -0.2
6,847 - CSW01_00050 0.66 -0.6
6,860 + CSW01_00050 0.68 -0.3
6,865 + CSW01_00050 0.68 -0.2
6,865 + CSW01_00050 0.68 -1.0
6,865 + CSW01_00050 0.68 -0.0
6,865 + CSW01_00050 0.68 -0.6
6,873 - CSW01_00050 0.69 +0.6
6,873 - CSW01_00050 0.69 -0.4
6,953 - CSW01_00050 0.80 -0.5
6,956 + CSW01_00050 0.81 +0.3
6,956 + CSW01_00050 0.81 +0.4
6,956 + CSW01_00050 0.81 +0.3
6,956 + CSW01_00050 0.81 -0.3
6,963 + CSW01_00050 0.82 -0.1
6,964 - CSW01_00050 0.82 +0.5
6,964 - CSW01_00050 0.82 -0.1
6,964 - CSW01_00050 0.82 +0.5
6,971 - CSW01_00050 0.83 -0.7
6,990 + CSW01_00050 0.85 +0.3
6,990 + CSW01_00050 0.85 +0.4
6,998 - CSW01_00050 0.86 +0.7
6,998 - CSW01_00050 0.86 +0.6
6,998 - CSW01_00050 0.86 -0.7
7,047 - -0.4
7,069 - +0.9
7,070 - -0.6
7,231 + +1.5
7,257 + +0.2
7,306 + +0.1
7,333 + -0.8

Or see this region's nucleotide sequence