Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26565

Experiment: Uridine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_26560 and AO356_26565 are separated by 584 nucleotidesAO356_26565 and AO356_26570 are separated by 11 nucleotidesAO356_26570 and AO356_26575 are separated by 107 nucleotides AO356_26560: AO356_26560 - Clp protease ClpC, at 6,044,869 to 6,047,625 _26560 AO356_26565: AO356_26565 - thioredoxin peroxidase, at 6,048,210 to 6,048,752 _26565 AO356_26570: AO356_26570 - disulfide bond formation protein DsbA, at 6,048,764 to 6,049,294 _26570 AO356_26575: AO356_26575 - low temperature requirement protein A, at 6,049,402 to 6,050,502 _26575 Position (kb) 6048 6049Strain fitness (log2 ratio) -2 -1 0 1 2at 6047.250 kb on + strand, within AO356_26560at 6047.265 kb on - strand, within AO356_26560at 6047.386 kb on + strandat 6047.509 kb on + strandat 6047.509 kb on + strandat 6047.510 kb on - strandat 6047.601 kb on + strandat 6047.605 kb on + strandat 6047.605 kb on + strandat 6047.605 kb on + strandat 6047.605 kb on + strandat 6047.605 kb on + strandat 6047.606 kb on - strandat 6047.606 kb on - strandat 6047.675 kb on + strandat 6047.675 kb on + strandat 6047.676 kb on - strandat 6047.686 kb on - strandat 6047.724 kb on - strandat 6047.724 kb on - strandat 6047.927 kb on - strandat 6047.948 kb on + strandat 6047.948 kb on + strandat 6047.950 kb on + strandat 6047.950 kb on + strandat 6047.950 kb on + strandat 6047.950 kb on + strandat 6047.951 kb on - strandat 6047.951 kb on - strandat 6047.989 kb on - strandat 6048.119 kb on + strandat 6048.119 kb on + strandat 6048.120 kb on - strandat 6048.120 kb on - strandat 6048.120 kb on - strandat 6048.144 kb on + strandat 6048.163 kb on + strandat 6048.163 kb on + strandat 6048.164 kb on - strandat 6048.164 kb on - strandat 6048.195 kb on - strandat 6048.328 kb on + strand, within AO356_26565at 6048.362 kb on - strand, within AO356_26565at 6048.373 kb on - strand, within AO356_26565at 6048.417 kb on + strand, within AO356_26565at 6048.418 kb on - strand, within AO356_26565at 6048.418 kb on - strand, within AO356_26565at 6048.431 kb on - strand, within AO356_26565at 6048.447 kb on + strand, within AO356_26565at 6048.448 kb on - strand, within AO356_26565at 6048.467 kb on + strand, within AO356_26565at 6048.573 kb on + strand, within AO356_26565at 6048.582 kb on + strand, within AO356_26565at 6048.582 kb on + strand, within AO356_26565at 6048.583 kb on - strand, within AO356_26565at 6048.583 kb on - strand, within AO356_26565at 6048.605 kb on + strand, within AO356_26565at 6048.605 kb on + strand, within AO356_26565at 6048.606 kb on - strand, within AO356_26565at 6048.654 kb on + strand, within AO356_26565at 6048.655 kb on - strand, within AO356_26565at 6048.655 kb on - strand, within AO356_26565at 6048.655 kb on - strand, within AO356_26565at 6048.655 kb on - strand, within AO356_26565at 6048.655 kb on - strand, within AO356_26565at 6048.787 kb on - strandat 6048.878 kb on + strand, within AO356_26570at 6048.897 kb on + strand, within AO356_26570at 6048.898 kb on - strand, within AO356_26570at 6048.898 kb on - strand, within AO356_26570at 6048.898 kb on - strand, within AO356_26570at 6048.996 kb on - strand, within AO356_26570at 6049.090 kb on - strand, within AO356_26570at 6049.139 kb on - strand, within AO356_26570at 6049.142 kb on + strand, within AO356_26570at 6049.142 kb on + strand, within AO356_26570at 6049.143 kb on - strand, within AO356_26570at 6049.230 kb on - strand, within AO356_26570at 6049.368 kb on - strandat 6049.368 kb on - strandat 6049.418 kb on - strandat 6049.630 kb on - strand, within AO356_26575at 6049.735 kb on + strand, within AO356_26575

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
remove
6,047,250 + AO356_26560 0.86 -1.2
6,047,265 - AO356_26560 0.87 -0.1
6,047,386 + -0.2
6,047,509 + -0.3
6,047,509 + -0.6
6,047,510 - +0.3
6,047,601 + +0.3
6,047,605 + -0.2
6,047,605 + -2.3
6,047,605 + +0.9
6,047,605 + -0.4
6,047,605 + -0.4
6,047,606 - -0.3
6,047,606 - +0.6
6,047,675 + +0.4
6,047,675 + +1.8
6,047,676 - +0.2
6,047,686 - +0.1
6,047,724 - -1.6
6,047,724 - -0.4
6,047,927 - +0.1
6,047,948 + -1.1
6,047,948 + +1.9
6,047,950 + -0.4
6,047,950 + -0.4
6,047,950 + +0.9
6,047,950 + +0.8
6,047,951 - -0.0
6,047,951 - +0.5
6,047,989 - -0.5
6,048,119 + +0.7
6,048,119 + +0.6
6,048,120 - -0.1
6,048,120 - -0.1
6,048,120 - -0.6
6,048,144 + -0.0
6,048,163 + +0.2
6,048,163 + +0.4
6,048,164 - +0.1
6,048,164 - +0.2
6,048,195 - +1.6
6,048,328 + AO356_26565 0.22 +0.9
6,048,362 - AO356_26565 0.28 +0.0
6,048,373 - AO356_26565 0.30 +0.2
6,048,417 + AO356_26565 0.38 +0.7
6,048,418 - AO356_26565 0.38 -0.8
6,048,418 - AO356_26565 0.38 +0.2
6,048,431 - AO356_26565 0.41 +0.0
6,048,447 + AO356_26565 0.44 +1.2
6,048,448 - AO356_26565 0.44 +0.9
6,048,467 + AO356_26565 0.47 +0.4
6,048,573 + AO356_26565 0.67 +0.4
6,048,582 + AO356_26565 0.69 +0.3
6,048,582 + AO356_26565 0.69 +0.8
6,048,583 - AO356_26565 0.69 +1.9
6,048,583 - AO356_26565 0.69 -0.2
6,048,605 + AO356_26565 0.73 -0.8
6,048,605 + AO356_26565 0.73 +0.5
6,048,606 - AO356_26565 0.73 +1.2
6,048,654 + AO356_26565 0.82 -0.2
6,048,655 - AO356_26565 0.82 +1.8
6,048,655 - AO356_26565 0.82 -0.0
6,048,655 - AO356_26565 0.82 +0.8
6,048,655 - AO356_26565 0.82 -0.7
6,048,655 - AO356_26565 0.82 +0.5
6,048,787 - -0.2
6,048,878 + AO356_26570 0.21 +0.4
6,048,897 + AO356_26570 0.25 +0.3
6,048,898 - AO356_26570 0.25 -1.7
6,048,898 - AO356_26570 0.25 +0.3
6,048,898 - AO356_26570 0.25 +0.4
6,048,996 - AO356_26570 0.44 +0.5
6,049,090 - AO356_26570 0.61 +0.1
6,049,139 - AO356_26570 0.71 +0.5
6,049,142 + AO356_26570 0.71 +0.4
6,049,142 + AO356_26570 0.71 +0.3
6,049,143 - AO356_26570 0.71 +0.3
6,049,230 - AO356_26570 0.88 -0.0
6,049,368 - +0.3
6,049,368 - -0.6
6,049,418 - -0.6
6,049,630 - AO356_26575 0.21 +0.1
6,049,735 + AO356_26575 0.30 +0.1

Or see this region's nucleotide sequence