Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25170 and AO356_25175 overlap by 1 nucleotides AO356_25175 and AO356_25180 are separated by 165 nucleotides AO356_25180 and AO356_25185 are separated by 219 nucleotides AO356_25185 and AO356_25190 overlap by 4 nucleotides
AO356_25170: AO356_25170 - lipid carrier protein, at 5,695,783 to 5,696,253
_25170
AO356_25175: AO356_25175 - zinc-binding protein, at 5,696,253 to 5,696,627
_25175
AO356_25180: AO356_25180 - DnrE protein, at 5,696,793 to 5,697,470
_25180
AO356_25185: AO356_25185 - hypothetical protein, at 5,697,690 to 5,698,337
_25185
AO356_25190: AO356_25190 - histidine kinase, at 5,698,334 to 5,700,133
_25190
Position (kb) 5696
5697
5698 Strain fitness (log2 ratio) -1
0
1 at 5695.985 kb on - strand, within AO356_25170 at 5695.985 kb on - strand, within AO356_25170 at 5696.101 kb on - strand, within AO356_25170 at 5696.193 kb on - strand, within AO356_25170 at 5696.283 kb on + strand at 5696.283 kb on + strand at 5696.283 kb on + strand at 5696.794 kb on + strand at 5697.444 kb on + strand at 5697.444 kb on + strand at 5697.444 kb on + strand at 5697.475 kb on + strand at 5697.475 kb on + strand at 5697.519 kb on + strand at 5697.836 kb on - strand, within AO356_25185 at 5697.982 kb on + strand, within AO356_25185 at 5697.982 kb on + strand, within AO356_25185 at 5697.983 kb on - strand, within AO356_25185 at 5697.983 kb on - strand, within AO356_25185 at 5698.007 kb on + strand, within AO356_25185 at 5698.021 kb on + strand, within AO356_25185 at 5698.022 kb on - strand, within AO356_25185 at 5698.102 kb on + strand, within AO356_25185 at 5698.102 kb on + strand, within AO356_25185 at 5698.102 kb on + strand, within AO356_25185 at 5698.103 kb on - strand, within AO356_25185 at 5698.103 kb on - strand, within AO356_25185 at 5698.103 kb on - strand, within AO356_25185 at 5698.411 kb on + strand at 5698.412 kb on - strand at 5698.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 5,695,985 - AO356_25170 0.43 -1.2 5,695,985 - AO356_25170 0.43 -0.2 5,696,101 - AO356_25170 0.68 -1.6 5,696,193 - AO356_25170 0.87 +0.4 5,696,283 + +0.6 5,696,283 + -0.4 5,696,283 + +0.6 5,696,794 + +0.2 5,697,444 + +0.8 5,697,444 + -0.4 5,697,444 + +1.4 5,697,475 + +0.6 5,697,475 + +0.4 5,697,519 + -0.3 5,697,836 - AO356_25185 0.23 +1.0 5,697,982 + AO356_25185 0.45 +1.0 5,697,982 + AO356_25185 0.45 +0.5 5,697,983 - AO356_25185 0.45 +1.4 5,697,983 - AO356_25185 0.45 -0.4 5,698,007 + AO356_25185 0.49 -1.0 5,698,021 + AO356_25185 0.51 -0.8 5,698,022 - AO356_25185 0.51 -0.3 5,698,102 + AO356_25185 0.64 -0.3 5,698,102 + AO356_25185 0.64 -0.2 5,698,102 + AO356_25185 0.64 +0.2 5,698,103 - AO356_25185 0.64 +0.1 5,698,103 - AO356_25185 0.64 +0.6 5,698,103 - AO356_25185 0.64 -0.1 5,698,411 + +0.0 5,698,412 - +0.4 5,698,412 - +0.6
Or see this region's nucleotide sequence