Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09385

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09380 and AO356_09385 are separated by 10 nucleotidesAO356_09385 and AO356_09390 are separated by 179 nucleotidesAO356_09390 and AO356_09395 are separated by 4 nucleotides AO356_09380: AO356_09380 - cell division protein, at 2,123,929 to 2,125,503 _09380 AO356_09385: AO356_09385 - 3-dehydroquinate synthase, at 2,125,514 to 2,126,614 _09385 AO356_09390: AO356_09390 - shikimate kinase, at 2,126,794 to 2,127,312 _09390 AO356_09395: AO356_09395 - fimbrial protein, at 2,127,317 to 2,129,404 _09395 Position (kb) 2125 2126 2127Strain fitness (log2 ratio) -2 -1 0 1 2at 2124.589 kb on - strand, within AO356_09380at 2124.712 kb on + strand, within AO356_09380at 2124.712 kb on + strand, within AO356_09380at 2124.712 kb on + strand, within AO356_09380at 2124.712 kb on + strand, within AO356_09380at 2124.712 kb on + strand, within AO356_09380at 2124.712 kb on + strand, within AO356_09380at 2124.713 kb on - strand, within AO356_09380at 2124.713 kb on - strand, within AO356_09380at 2124.713 kb on - strand, within AO356_09380at 2124.713 kb on - strand, within AO356_09380at 2124.713 kb on - strand, within AO356_09380at 2124.713 kb on - strand, within AO356_09380at 2124.741 kb on + strand, within AO356_09380at 2124.741 kb on + strand, within AO356_09380at 2124.741 kb on + strand, within AO356_09380at 2124.741 kb on + strand, within AO356_09380at 2124.741 kb on + strand, within AO356_09380at 2124.742 kb on - strand, within AO356_09380at 2124.742 kb on - strand, within AO356_09380at 2124.742 kb on - strand, within AO356_09380at 2124.914 kb on + strand, within AO356_09380at 2124.914 kb on + strand, within AO356_09380at 2124.914 kb on + strand, within AO356_09380at 2124.915 kb on - strand, within AO356_09380at 2124.915 kb on - strand, within AO356_09380at 2124.915 kb on - strand, within AO356_09380at 2124.915 kb on - strand, within AO356_09380at 2124.938 kb on + strand, within AO356_09380at 2124.939 kb on - strand, within AO356_09380at 2125.121 kb on + strand, within AO356_09380at 2125.121 kb on + strand, within AO356_09380at 2125.122 kb on - strand, within AO356_09380at 2125.122 kb on - strand, within AO356_09380at 2125.122 kb on - strand, within AO356_09380at 2125.122 kb on - strand, within AO356_09380at 2125.284 kb on + strand, within AO356_09380at 2125.284 kb on + strand, within AO356_09380at 2125.362 kb on - strandat 2125.497 kb on + strandat 2125.497 kb on + strandat 2125.497 kb on + strandat 2125.497 kb on + strandat 2125.497 kb on + strandat 2125.498 kb on - strandat 2125.498 kb on - strandat 2125.498 kb on - strandat 2125.498 kb on - strandat 2125.498 kb on - strandat 2125.512 kb on + strandat 2125.512 kb on + strandat 2125.512 kb on + strandat 2125.512 kb on + strandat 2125.513 kb on - strandat 2125.513 kb on - strandat 2125.513 kb on - strandat 2125.516 kb on - strandat 2125.522 kb on + strandat 2126.659 kb on - strandat 2126.681 kb on - strandat 2126.681 kb on - strandat 2126.681 kb on - strandat 2126.681 kb on - strandat 2127.426 kb on + strandat 2127.427 kb on - strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.454 kb on + strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.455 kb on - strandat 2127.458 kb on + strandat 2127.458 kb on + strandat 2127.458 kb on + strandat 2127.458 kb on + strandat 2127.459 kb on - strandat 2127.459 kb on - strandat 2127.459 kb on - strandat 2127.475 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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2,124,589 - AO356_09380 0.42 +0.2
2,124,712 + AO356_09380 0.50 +0.0
2,124,712 + AO356_09380 0.50 +0.7
2,124,712 + AO356_09380 0.50 +0.9
2,124,712 + AO356_09380 0.50 +1.1
2,124,712 + AO356_09380 0.50 +0.6
2,124,712 + AO356_09380 0.50 +0.0
2,124,713 - AO356_09380 0.50 -0.4
2,124,713 - AO356_09380 0.50 -1.1
2,124,713 - AO356_09380 0.50 +0.5
2,124,713 - AO356_09380 0.50 +1.1
2,124,713 - AO356_09380 0.50 +0.4
2,124,713 - AO356_09380 0.50 +1.1
2,124,741 + AO356_09380 0.52 +0.1
2,124,741 + AO356_09380 0.52 +1.3
2,124,741 + AO356_09380 0.52 -0.1
2,124,741 + AO356_09380 0.52 +0.1
2,124,741 + AO356_09380 0.52 -0.4
2,124,742 - AO356_09380 0.52 +0.5
2,124,742 - AO356_09380 0.52 -0.6
2,124,742 - AO356_09380 0.52 +2.5
2,124,914 + AO356_09380 0.63 +0.4
2,124,914 + AO356_09380 0.63 +1.1
2,124,914 + AO356_09380 0.63 +0.8
2,124,915 - AO356_09380 0.63 +0.1
2,124,915 - AO356_09380 0.63 +1.4
2,124,915 - AO356_09380 0.63 +1.1
2,124,915 - AO356_09380 0.63 +0.5
2,124,938 + AO356_09380 0.64 +0.8
2,124,939 - AO356_09380 0.64 +0.4
2,125,121 + AO356_09380 0.76 +0.9
2,125,121 + AO356_09380 0.76 +0.9
2,125,122 - AO356_09380 0.76 +0.5
2,125,122 - AO356_09380 0.76 -0.7
2,125,122 - AO356_09380 0.76 +0.6
2,125,122 - AO356_09380 0.76 +0.2
2,125,284 + AO356_09380 0.86 +0.5
2,125,284 + AO356_09380 0.86 +1.0
2,125,362 - +0.9
2,125,497 + +0.1
2,125,497 + +0.0
2,125,497 + -0.1
2,125,497 + +0.4
2,125,497 + +0.8
2,125,498 - +0.6
2,125,498 - +0.4
2,125,498 - +1.3
2,125,498 - -0.5
2,125,498 - +0.8
2,125,512 + +0.0
2,125,512 + +0.6
2,125,512 + +1.4
2,125,512 + +0.5
2,125,513 - +0.2
2,125,513 - -1.6
2,125,513 - +1.3
2,125,516 - +0.6
2,125,522 + +0.3
2,126,659 - -0.8
2,126,681 - +0.4
2,126,681 - +1.1
2,126,681 - +0.8
2,126,681 - +1.2
2,127,426 + -1.1
2,127,427 - +0.6
2,127,454 + +0.6
2,127,454 + +0.3
2,127,454 + -0.6
2,127,454 + +0.5
2,127,454 + -0.1
2,127,454 + -2.1
2,127,454 + +0.8
2,127,455 - +0.4
2,127,455 - -0.2
2,127,455 - +0.9
2,127,455 - -0.2
2,127,455 - -0.4
2,127,455 - +0.1
2,127,455 - +0.0
2,127,455 - +1.1
2,127,455 - +0.1
2,127,455 - -0.3
2,127,455 - -0.2
2,127,455 - -0.3
2,127,458 + +0.7
2,127,458 + -1.2
2,127,458 + +0.1
2,127,458 + -0.6
2,127,459 - +1.2
2,127,459 - +0.9
2,127,459 - -0.3
2,127,475 + +0.1

Or see this region's nucleotide sequence