Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04150

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04145 and AO356_04150 are separated by 155 nucleotidesAO356_04150 and AO356_04155 are separated by 187 nucleotides AO356_04145: AO356_04145 - hypothetical protein, at 932,500 to 933,366 _04145 AO356_04150: AO356_04150 - transcriptional regulator, at 933,522 to 933,914 _04150 AO356_04155: AO356_04155 - thioredoxin, at 934,102 to 934,833 _04155 Position (kb) 933 934Strain fitness (log2 ratio) -1 0 1 2at 932.570 kb on + strandat 932.623 kb on + strand, within AO356_04145at 932.624 kb on - strand, within AO356_04145at 932.714 kb on - strand, within AO356_04145at 932.932 kb on + strand, within AO356_04145at 932.932 kb on + strand, within AO356_04145at 932.932 kb on + strand, within AO356_04145at 932.933 kb on - strand, within AO356_04145at 932.933 kb on - strand, within AO356_04145at 933.364 kb on + strandat 933.364 kb on + strandat 933.432 kb on - strandat 933.440 kb on + strandat 933.463 kb on + strandat 933.560 kb on + strandat 933.560 kb on + strandat 933.561 kb on - strandat 933.561 kb on - strandat 933.561 kb on - strandat 933.718 kb on + strand, within AO356_04150at 933.718 kb on + strand, within AO356_04150at 933.718 kb on + strand, within AO356_04150at 933.718 kb on + strand, within AO356_04150at 933.718 kb on + strand, within AO356_04150at 933.719 kb on - strand, within AO356_04150at 933.719 kb on - strand, within AO356_04150at 933.719 kb on - strand, within AO356_04150at 933.719 kb on - strand, within AO356_04150at 933.719 kb on - strand, within AO356_04150at 933.735 kb on + strand, within AO356_04150at 933.735 kb on + strand, within AO356_04150at 933.745 kb on + strand, within AO356_04150at 933.817 kb on + strand, within AO356_04150at 933.829 kb on + strand, within AO356_04150at 933.829 kb on + strand, within AO356_04150at 933.830 kb on - strand, within AO356_04150at 933.902 kb on + strandat 933.902 kb on + strandat 933.902 kb on + strandat 933.904 kb on + strandat 933.904 kb on + strandat 933.904 kb on + strandat 933.904 kb on + strandat 933.904 kb on + strandat 933.904 kb on + strandat 933.905 kb on - strandat 933.905 kb on - strandat 933.905 kb on - strandat 933.905 kb on - strandat 933.905 kb on - strandat 933.945 kb on + strandat 933.945 kb on + strandat 933.946 kb on - strandat 933.946 kb on - strandat 933.946 kb on - strandat 933.949 kb on + strandat 933.949 kb on + strandat 933.949 kb on + strandat 933.949 kb on + strandat 933.949 kb on + strandat 933.949 kb on + strandat 933.949 kb on + strandat 933.949 kb on + strandat 933.950 kb on - strandat 933.950 kb on - strandat 933.950 kb on - strandat 933.950 kb on - strandat 934.109 kb on + strandat 934.109 kb on + strandat 934.109 kb on + strandat 934.109 kb on + strandat 934.110 kb on - strandat 934.110 kb on - strandat 934.325 kb on - strand, within AO356_04155at 934.534 kb on + strand, within AO356_04155at 934.534 kb on + strand, within AO356_04155at 934.534 kb on + strand, within AO356_04155at 934.534 kb on + strand, within AO356_04155at 934.588 kb on + strand, within AO356_04155at 934.588 kb on + strand, within AO356_04155at 934.588 kb on + strand, within AO356_04155at 934.588 kb on + strand, within AO356_04155at 934.588 kb on + strand, within AO356_04155at 934.589 kb on - strand, within AO356_04155at 934.589 kb on - strand, within AO356_04155at 934.594 kb on + strand, within AO356_04155at 934.594 kb on + strand, within AO356_04155at 934.595 kb on - strand, within AO356_04155at 934.645 kb on + strand, within AO356_04155at 934.645 kb on + strand, within AO356_04155at 934.646 kb on - strand, within AO356_04155at 934.646 kb on - strand, within AO356_04155at 934.646 kb on - strand, within AO356_04155at 934.678 kb on + strand, within AO356_04155at 934.678 kb on + strand, within AO356_04155at 934.678 kb on + strand, within AO356_04155at 934.678 kb on + strand, within AO356_04155at 934.679 kb on - strand, within AO356_04155at 934.688 kb on - strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.721 kb on - strand, within AO356_04155at 934.721 kb on - strand, within AO356_04155at 934.726 kb on + strand, within AO356_04155at 934.726 kb on + strand, within AO356_04155at 934.727 kb on - strand, within AO356_04155at 934.727 kb on - strand, within AO356_04155at 934.727 kb on - strand, within AO356_04155at 934.795 kb on + strandat 934.795 kb on + strandat 934.795 kb on + strandat 934.795 kb on + strandat 934.795 kb on + strandat 934.796 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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932,570 + +0.5
932,623 + AO356_04145 0.14 +0.5
932,624 - AO356_04145 0.14 +0.2
932,714 - AO356_04145 0.25 -0.1
932,932 + AO356_04145 0.50 -0.4
932,932 + AO356_04145 0.50 +0.7
932,932 + AO356_04145 0.50 -0.8
932,933 - AO356_04145 0.50 -1.3
932,933 - AO356_04145 0.50 +1.0
933,364 + -0.1
933,364 + -0.6
933,432 - +1.2
933,440 + -0.6
933,463 + -0.1
933,560 + -0.1
933,560 + +2.5
933,561 - -0.6
933,561 - -0.7
933,561 - +1.1
933,718 + AO356_04150 0.50 -0.4
933,718 + AO356_04150 0.50 +0.2
933,718 + AO356_04150 0.50 +1.0
933,718 + AO356_04150 0.50 +0.2
933,718 + AO356_04150 0.50 +0.7
933,719 - AO356_04150 0.50 -0.0
933,719 - AO356_04150 0.50 +0.3
933,719 - AO356_04150 0.50 +0.2
933,719 - AO356_04150 0.50 -0.2
933,719 - AO356_04150 0.50 -0.8
933,735 + AO356_04150 0.54 +0.7
933,735 + AO356_04150 0.54 +0.3
933,745 + AO356_04150 0.57 +0.2
933,817 + AO356_04150 0.75 +0.9
933,829 + AO356_04150 0.78 +1.2
933,829 + AO356_04150 0.78 +0.5
933,830 - AO356_04150 0.78 +0.4
933,902 + -0.7
933,902 + +1.0
933,902 + +1.6
933,904 + -0.5
933,904 + +0.0
933,904 + +0.1
933,904 + +0.7
933,904 + -0.5
933,904 + +0.2
933,905 - +1.4
933,905 - -0.8
933,905 - -0.4
933,905 - -0.7
933,905 - +0.0
933,945 + -0.2
933,945 + +0.9
933,946 - +0.7
933,946 - +0.0
933,946 - -1.4
933,949 + +0.6
933,949 + +0.2
933,949 + -0.2
933,949 + +0.5
933,949 + -0.4
933,949 + +1.4
933,949 + +0.7
933,949 + -0.3
933,950 - -0.3
933,950 - +1.2
933,950 - +0.4
933,950 - -0.7
934,109 + -1.3
934,109 + +0.2
934,109 + +0.5
934,109 + +0.1
934,110 - -0.4
934,110 - -0.3
934,325 - AO356_04155 0.30 +0.8
934,534 + AO356_04155 0.59 +0.1
934,534 + AO356_04155 0.59 +0.4
934,534 + AO356_04155 0.59 -1.2
934,534 + AO356_04155 0.59 -0.5
934,588 + AO356_04155 0.66 +0.4
934,588 + AO356_04155 0.66 -0.0
934,588 + AO356_04155 0.66 -0.0
934,588 + AO356_04155 0.66 +0.6
934,588 + AO356_04155 0.66 +0.6
934,589 - AO356_04155 0.67 +0.2
934,589 - AO356_04155 0.67 +0.6
934,594 + AO356_04155 0.67 +0.3
934,594 + AO356_04155 0.67 -0.0
934,595 - AO356_04155 0.67 +0.1
934,645 + AO356_04155 0.74 +0.2
934,645 + AO356_04155 0.74 -0.6
934,646 - AO356_04155 0.74 -0.3
934,646 - AO356_04155 0.74 +0.8
934,646 - AO356_04155 0.74 +0.7
934,678 + AO356_04155 0.79 +0.9
934,678 + AO356_04155 0.79 +0.1
934,678 + AO356_04155 0.79 +1.4
934,678 + AO356_04155 0.79 +0.4
934,679 - AO356_04155 0.79 +0.2
934,688 - AO356_04155 0.80 +0.4
934,720 + AO356_04155 0.84 -0.5
934,720 + AO356_04155 0.84 -0.4
934,720 + AO356_04155 0.84 -1.1
934,720 + AO356_04155 0.84 -0.3
934,720 + AO356_04155 0.84 -0.6
934,720 + AO356_04155 0.84 -0.1
934,720 + AO356_04155 0.84 +0.0
934,721 - AO356_04155 0.85 -0.2
934,721 - AO356_04155 0.85 -0.2
934,726 + AO356_04155 0.85 +0.2
934,726 + AO356_04155 0.85 +0.8
934,727 - AO356_04155 0.85 -0.1
934,727 - AO356_04155 0.85 +0.4
934,727 - AO356_04155 0.85 +0.5
934,795 + +1.0
934,795 + -0.2
934,795 + +0.2
934,795 + -0.0
934,795 + +0.5
934,796 - -0.1

Or see this region's nucleotide sequence