Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03195 and AO356_03200 are separated by 268 nucleotides AO356_03200 and AO356_03205 are separated by 163 nucleotides
AO356_03195: AO356_03195 - 2-dehydropantoate 2-reductase, at 710,538 to 711,491
_03195
AO356_03200: AO356_03200 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 711,760 to 712,836
_03200
AO356_03205: AO356_03205 - acetyltransferase, at 713,000 to 713,281
_03205
Position (kb) 711
712
713 Strain fitness (log2 ratio) -2
-1
0
1
2 at 710.846 kb on + strand, within AO356_03195 at 710.846 kb on + strand, within AO356_03195 at 710.878 kb on + strand, within AO356_03195 at 710.878 kb on + strand, within AO356_03195 at 710.878 kb on + strand, within AO356_03195 at 710.878 kb on + strand, within AO356_03195 at 710.879 kb on - strand, within AO356_03195 at 710.879 kb on - strand, within AO356_03195 at 710.879 kb on - strand, within AO356_03195 at 710.879 kb on - strand, within AO356_03195 at 710.879 kb on - strand, within AO356_03195 at 711.387 kb on + strand, within AO356_03195 at 711.388 kb on - strand, within AO356_03195 at 711.430 kb on + strand at 711.431 kb on - strand at 711.431 kb on - strand at 711.510 kb on - strand at 711.561 kb on + strand at 711.561 kb on + strand at 711.561 kb on + strand at 711.561 kb on + strand at 711.562 kb on - strand at 711.562 kb on - strand at 711.562 kb on - strand at 711.562 kb on - strand at 711.562 kb on - strand at 711.562 kb on - strand at 711.615 kb on + strand at 711.615 kb on + strand at 711.616 kb on - strand at 711.618 kb on - strand at 711.618 kb on - strand at 711.618 kb on - strand at 711.691 kb on + strand at 711.692 kb on - strand at 711.753 kb on + strand at 711.770 kb on + strand at 711.771 kb on - strand at 711.771 kb on - strand at 711.787 kb on - strand at 711.977 kb on - strand, within AO356_03200 at 712.024 kb on + strand, within AO356_03200 at 712.024 kb on + strand, within AO356_03200 at 712.025 kb on - strand, within AO356_03200 at 712.025 kb on - strand, within AO356_03200 at 712.025 kb on - strand, within AO356_03200 at 712.025 kb on - strand, within AO356_03200 at 712.025 kb on - strand, within AO356_03200 at 712.043 kb on - strand, within AO356_03200 at 712.043 kb on - strand, within AO356_03200 at 712.043 kb on - strand, within AO356_03200 at 712.217 kb on - strand, within AO356_03200 at 712.217 kb on - strand, within AO356_03200 at 712.217 kb on - strand, within AO356_03200 at 712.217 kb on - strand, within AO356_03200 at 712.445 kb on - strand, within AO356_03200 at 712.445 kb on - strand, within AO356_03200 at 712.445 kb on - strand, within AO356_03200 at 712.486 kb on + strand, within AO356_03200 at 712.727 kb on - strand, within AO356_03200 at 712.870 kb on + strand at 712.871 kb on - strand at 712.881 kb on + strand at 712.881 kb on + strand at 712.881 kb on + strand at 712.881 kb on + strand at 712.881 kb on + strand at 712.881 kb on + strand at 712.881 kb on + strand at 712.882 kb on - strand at 712.882 kb on - strand at 712.882 kb on - strand at 712.882 kb on - strand at 712.882 kb on - strand at 712.882 kb on - strand at 712.882 kb on - strand at 712.882 kb on - strand at 712.887 kb on + strand at 712.887 kb on + strand at 712.887 kb on + strand at 712.887 kb on + strand at 712.887 kb on + strand at 712.887 kb on + strand at 712.887 kb on + strand at 712.887 kb on + strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.888 kb on - strand at 712.891 kb on + strand at 712.891 kb on + strand at 712.892 kb on - strand at 712.892 kb on - strand at 712.904 kb on + strand at 712.904 kb on + strand at 712.904 kb on + strand at 712.904 kb on + strand at 712.905 kb on - strand at 712.905 kb on - strand at 712.905 kb on - strand at 712.905 kb on - strand at 712.905 kb on - strand at 712.905 kb on - strand at 712.948 kb on - strand at 712.948 kb on - strand at 713.037 kb on + strand, within AO356_03205 at 713.037 kb on + strand, within AO356_03205 at 713.037 kb on + strand, within AO356_03205 at 713.037 kb on + strand, within AO356_03205 at 713.037 kb on + strand, within AO356_03205 at 713.037 kb on + strand, within AO356_03205 at 713.037 kb on + strand, within AO356_03205 at 713.038 kb on - strand, within AO356_03205 at 713.038 kb on - strand, within AO356_03205 at 713.038 kb on - strand, within AO356_03205 at 713.038 kb on - strand, within AO356_03205 at 713.038 kb on - strand, within AO356_03205 at 713.038 kb on - strand, within AO356_03205 at 713.049 kb on + strand, within AO356_03205 at 713.049 kb on + strand, within AO356_03205 at 713.050 kb on - strand, within AO356_03205 at 713.050 kb on - strand, within AO356_03205 at 713.050 kb on - strand, within AO356_03205 at 713.073 kb on + strand, within AO356_03205 at 713.091 kb on + strand, within AO356_03205 at 713.091 kb on + strand, within AO356_03205 at 713.163 kb on + strand, within AO356_03205 at 713.163 kb on + strand, within AO356_03205 at 713.163 kb on + strand, within AO356_03205 at 713.164 kb on - strand, within AO356_03205 at 713.164 kb on - strand, within AO356_03205 at 713.164 kb on - strand, within AO356_03205 at 713.168 kb on - strand, within AO356_03205 at 713.168 kb on - strand, within AO356_03205 at 713.168 kb on - strand, within AO356_03205 at 713.195 kb on - strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.205 kb on + strand, within AO356_03205 at 713.205 kb on + strand, within AO356_03205 at 713.205 kb on + strand, within AO356_03205 at 713.285 kb on + strand at 713.286 kb on - strand at 713.286 kb on - strand at 713.286 kb on - strand at 713.314 kb on + strand at 713.314 kb on + strand at 713.314 kb on + strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.349 kb on - strand at 713.349 kb on - strand at 713.418 kb on + strand at 713.418 kb on + strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.421 kb on + strand at 713.421 kb on + strand at 713.422 kb on - strand at 713.422 kb on - strand at 713.422 kb on - strand at 713.530 kb on + strand at 713.530 kb on + strand at 713.531 kb on - strand at 713.531 kb on - strand at 713.573 kb on + strand at 713.577 kb on + strand at 713.578 kb on - strand at 713.592 kb on + strand at 713.593 kb on - strand at 713.598 kb on + strand at 713.598 kb on + strand at 713.651 kb on + strand at 713.742 kb on - strand at 713.743 kb on + strand at 713.743 kb on + strand at 713.743 kb on + strand at 713.744 kb on - strand at 713.744 kb on - strand at 713.744 kb on - strand at 713.826 kb on - strand at 713.829 kb on + strand at 713.830 kb on - strand at 713.832 kb on + strand at 713.832 kb on + strand at 713.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 710,846 + AO356_03195 0.32 -0.3 710,846 + AO356_03195 0.32 -0.2 710,878 + AO356_03195 0.36 +0.6 710,878 + AO356_03195 0.36 -0.1 710,878 + AO356_03195 0.36 -0.7 710,878 + AO356_03195 0.36 +0.5 710,879 - AO356_03195 0.36 +0.8 710,879 - AO356_03195 0.36 +0.5 710,879 - AO356_03195 0.36 -0.3 710,879 - AO356_03195 0.36 +0.3 710,879 - AO356_03195 0.36 -0.4 711,387 + AO356_03195 0.89 +0.1 711,388 - AO356_03195 0.89 -0.2 711,430 + -0.4 711,431 - +0.7 711,431 - -0.7 711,510 - -0.0 711,561 + +0.6 711,561 + -0.4 711,561 + +0.7 711,561 + -0.3 711,562 - +0.9 711,562 - +1.4 711,562 - +1.4 711,562 - -0.3 711,562 - -0.1 711,562 - +0.5 711,615 + -0.1 711,615 + +0.3 711,616 - +1.2 711,618 - +0.1 711,618 - +0.1 711,618 - +0.2 711,691 + +0.3 711,692 - -0.1 711,753 + +0.6 711,770 + +0.3 711,771 - -0.3 711,771 - -0.1 711,787 - +0.0 711,977 - AO356_03200 0.20 +0.7 712,024 + AO356_03200 0.25 +0.3 712,024 + AO356_03200 0.25 -0.2 712,025 - AO356_03200 0.25 +0.6 712,025 - AO356_03200 0.25 -1.0 712,025 - AO356_03200 0.25 -1.4 712,025 - AO356_03200 0.25 +1.3 712,025 - AO356_03200 0.25 +0.5 712,043 - AO356_03200 0.26 +1.1 712,043 - AO356_03200 0.26 -0.7 712,043 - AO356_03200 0.26 +0.8 712,217 - AO356_03200 0.42 -0.4 712,217 - AO356_03200 0.42 -1.0 712,217 - AO356_03200 0.42 +0.3 712,217 - AO356_03200 0.42 +0.3 712,445 - AO356_03200 0.64 +0.4 712,445 - AO356_03200 0.64 +1.0 712,445 - AO356_03200 0.64 +0.9 712,486 + AO356_03200 0.67 +0.3 712,727 - AO356_03200 0.90 +0.3 712,870 + -0.6 712,871 - +0.6 712,881 + +0.5 712,881 + +1.1 712,881 + -0.7 712,881 + +0.9 712,881 + +1.3 712,881 + +0.8 712,881 + -0.8 712,882 - -0.4 712,882 - -0.4 712,882 - -1.0 712,882 - +0.3 712,882 - -0.6 712,882 - +0.9 712,882 - +0.4 712,882 - +0.7 712,887 + -0.6 712,887 + -0.1 712,887 + +0.3 712,887 + -0.4 712,887 + +0.0 712,887 + +0.5 712,887 + +1.5 712,887 + -0.1 712,888 - -0.8 712,888 - +0.9 712,888 - +0.5 712,888 - +0.4 712,888 - +0.1 712,888 - +0.2 712,888 - +0.7 712,888 - +0.0 712,888 - +0.7 712,888 - +0.8 712,888 - +2.0 712,888 - +1.3 712,888 - +0.3 712,888 - -0.5 712,891 + +0.7 712,891 + -0.4 712,892 - -0.2 712,892 - -0.9 712,904 + +1.1 712,904 + -0.3 712,904 + +0.6 712,904 + +1.3 712,905 - +0.5 712,905 - -0.2 712,905 - -0.3 712,905 - +0.5 712,905 - +0.3 712,905 - +0.8 712,948 - -0.8 712,948 - +0.3 713,037 + AO356_03205 0.13 -0.3 713,037 + AO356_03205 0.13 +0.7 713,037 + AO356_03205 0.13 +0.8 713,037 + AO356_03205 0.13 -2.2 713,037 + AO356_03205 0.13 -2.6 713,037 + AO356_03205 0.13 -0.6 713,037 + AO356_03205 0.13 -0.1 713,038 - AO356_03205 0.13 +0.1 713,038 - AO356_03205 0.13 -1.2 713,038 - AO356_03205 0.13 -1.5 713,038 - AO356_03205 0.13 -0.1 713,038 - AO356_03205 0.13 +1.0 713,038 - AO356_03205 0.13 -0.6 713,049 + AO356_03205 0.17 -0.5 713,049 + AO356_03205 0.17 -0.7 713,050 - AO356_03205 0.18 +0.0 713,050 - AO356_03205 0.18 -0.7 713,050 - AO356_03205 0.18 +1.3 713,073 + AO356_03205 0.26 -0.4 713,091 + AO356_03205 0.32 -0.4 713,091 + AO356_03205 0.32 +0.9 713,163 + AO356_03205 0.58 -0.2 713,163 + AO356_03205 0.58 -1.3 713,163 + AO356_03205 0.58 -0.5 713,164 - AO356_03205 0.58 -1.0 713,164 - AO356_03205 0.58 -0.0 713,164 - AO356_03205 0.58 -0.1 713,168 - AO356_03205 0.60 -0.6 713,168 - AO356_03205 0.60 -0.0 713,168 - AO356_03205 0.60 -0.1 713,195 - AO356_03205 0.69 -0.2 713,196 + AO356_03205 0.70 +0.3 713,196 + AO356_03205 0.70 -2.1 713,196 + AO356_03205 0.70 -1.4 713,196 + AO356_03205 0.70 +0.6 713,196 + AO356_03205 0.70 -1.0 713,196 + AO356_03205 0.70 +0.3 713,196 + AO356_03205 0.70 +0.1 713,197 - AO356_03205 0.70 -0.0 713,197 - AO356_03205 0.70 -0.3 713,197 - AO356_03205 0.70 -0.5 713,197 - AO356_03205 0.70 +0.8 713,197 - AO356_03205 0.70 +0.1 713,197 - AO356_03205 0.70 -0.5 713,197 - AO356_03205 0.70 -0.7 713,197 - AO356_03205 0.70 +0.7 713,197 - AO356_03205 0.70 -1.0 713,197 - AO356_03205 0.70 -0.6 713,197 - AO356_03205 0.70 +0.1 713,197 - AO356_03205 0.70 -0.2 713,205 + AO356_03205 0.73 -0.9 713,205 + AO356_03205 0.73 -0.1 713,205 + AO356_03205 0.73 -1.7 713,285 + -0.2 713,286 - -0.2 713,286 - +0.1 713,286 - -0.2 713,314 + -1.1 713,314 + -2.0 713,314 + -0.0 713,348 + -1.6 713,348 + +0.0 713,349 - +0.7 713,349 - +0.4 713,418 + -1.0 713,418 + -0.3 713,419 - +0.5 713,419 - +1.2 713,419 - +1.3 713,419 - +0.4 713,419 - +0.7 713,421 + -0.4 713,421 + -0.6 713,422 - +0.5 713,422 - +1.1 713,422 - +1.6 713,530 + -0.6 713,530 + +0.1 713,531 - +0.6 713,531 - +0.7 713,573 + -1.6 713,577 + -0.5 713,578 - -0.3 713,592 + +0.5 713,593 - +1.3 713,598 + -0.9 713,598 + -1.1 713,651 + +0.0 713,742 - +0.1 713,743 + +1.0 713,743 + +0.1 713,743 + -0.1 713,744 - +0.5 713,744 - +0.8 713,744 - +0.6 713,826 - +1.5 713,829 + -0.7 713,830 - +1.2 713,832 + +0.2 713,832 + -0.5 713,833 - +0.0
Or see this region's nucleotide sequence