Experiment: m.b. sodium fluoride 12.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3314 and Dshi_3315 are separated by 386 nucleotides Dshi_3315 and Dshi_3316 are separated by 14 nucleotides Dshi_3316 and Dshi_3317 are separated by 224 nucleotides
Dshi_3314: Dshi_3314 - hypothetical protein (RefSeq), at 3,477,352 to 3,477,885
_3314
Dshi_3315: Dshi_3315 - hypothetical protein (RefSeq), at 3,478,272 to 3,478,583
_3315
Dshi_3316: Dshi_3316 - phosphoserine phosphatase SerB (RefSeq), at 3,478,598 to 3,479,476
_3316
Dshi_3317: Dshi_3317 - phosphoserine aminotransferase (RefSeq), at 3,479,701 to 3,480,855
_3317
Position (kb)
3478
3479
3480 Strain fitness (log2 ratio)
-1
0
1 at 3477.913 kb on + strand at 3477.922 kb on - strand at 3478.019 kb on - strand at 3478.020 kb on - strand at 3478.067 kb on - strand at 3478.156 kb on - strand at 3478.156 kb on - strand at 3478.193 kb on + strand at 3478.302 kb on - strand at 3478.390 kb on + strand, within Dshi_3315 at 3478.405 kb on + strand, within Dshi_3315 at 3478.411 kb on + strand, within Dshi_3315 at 3478.421 kb on + strand, within Dshi_3315 at 3478.530 kb on - strand, within Dshi_3315 at 3478.530 kb on - strand, within Dshi_3315 at 3478.551 kb on - strand, within Dshi_3315 at 3479.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM remove 3,477,913 + -0.3 3,477,922 - +0.2 3,478,019 - -0.2 3,478,020 - -0.5 3,478,067 - -0.1 3,478,156 - +0.0 3,478,156 - +0.6 3,478,193 + -0.2 3,478,302 - +0.1 3,478,390 + Dshi_3315 0.38 +0.4 3,478,405 + Dshi_3315 0.43 +1.0 3,478,411 + Dshi_3315 0.45 +0.6 3,478,421 + Dshi_3315 0.48 -0.4 3,478,530 - Dshi_3315 0.83 +1.3 3,478,530 - Dshi_3315 0.83 +1.4 3,478,551 - Dshi_3315 0.89 +1.0 3,479,558 + -0.3
Or see this region's nucleotide sequence