Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0505

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0504 and Dshi_0505 are separated by 14 nucleotidesDshi_0505 and Dshi_0506 are separated by 13 nucleotides Dshi_0504: Dshi_0504 - molybdopterin oxidoreductase (RefSeq), at 487,314 to 490,274 _0504 Dshi_0505: Dshi_0505 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 490,289 to 490,885 _0505 Dshi_0506: Dshi_0506 - formate dehydrogenase, gamma subunit (RefSeq), at 490,899 to 491,927 _0506 Position (kb) 490 491Strain fitness (log2 ratio) -1 0 1 2at 489.299 kb on + strand, within Dshi_0504at 489.299 kb on + strand, within Dshi_0504at 489.478 kb on + strand, within Dshi_0504at 489.615 kb on - strand, within Dshi_0504at 489.786 kb on + strand, within Dshi_0504at 489.819 kb on + strand, within Dshi_0504at 489.819 kb on + strand, within Dshi_0504at 489.824 kb on + strand, within Dshi_0504at 489.875 kb on - strand, within Dshi_0504at 489.882 kb on - strand, within Dshi_0504at 489.885 kb on - strand, within Dshi_0504at 489.893 kb on + strand, within Dshi_0504at 489.955 kb on + strand, within Dshi_0504at 490.103 kb on + strandat 490.158 kb on - strandat 490.158 kb on - strandat 490.172 kb on + strandat 490.180 kb on - strandat 490.186 kb on - strandat 490.195 kb on - strandat 490.199 kb on - strandat 490.210 kb on + strandat 490.217 kb on + strandat 490.218 kb on - strandat 490.251 kb on - strandat 490.269 kb on + strandat 490.269 kb on + strandat 490.269 kb on + strandat 490.269 kb on + strandat 490.269 kb on + strandat 490.277 kb on - strandat 490.277 kb on - strandat 490.314 kb on + strandat 490.354 kb on - strand, within Dshi_0505at 490.438 kb on + strand, within Dshi_0505at 490.469 kb on - strand, within Dshi_0505at 490.484 kb on - strand, within Dshi_0505at 490.521 kb on + strand, within Dshi_0505at 490.543 kb on + strand, within Dshi_0505at 490.566 kb on + strand, within Dshi_0505at 490.635 kb on - strand, within Dshi_0505at 490.707 kb on - strand, within Dshi_0505at 490.731 kb on - strand, within Dshi_0505at 490.750 kb on - strand, within Dshi_0505at 490.755 kb on - strand, within Dshi_0505at 490.825 kb on + strand, within Dshi_0505at 490.825 kb on - strand, within Dshi_0505at 490.852 kb on + strandat 490.884 kb on + strandat 490.884 kb on + strandat 490.892 kb on - strandat 490.958 kb on + strandat 490.979 kb on + strandat 490.979 kb on + strandat 490.987 kb on - strandat 490.987 kb on - strandat 490.987 kb on - strandat 491.102 kb on + strand, within Dshi_0506at 491.123 kb on + strand, within Dshi_0506at 491.140 kb on - strand, within Dshi_0506at 491.150 kb on + strand, within Dshi_0506at 491.158 kb on - strand, within Dshi_0506at 491.158 kb on - strand, within Dshi_0506at 491.184 kb on - strand, within Dshi_0506at 491.263 kb on + strand, within Dshi_0506at 491.294 kb on - strand, within Dshi_0506at 491.305 kb on + strand, within Dshi_0506at 491.344 kb on + strand, within Dshi_0506at 491.352 kb on - strand, within Dshi_0506at 491.352 kb on - strand, within Dshi_0506at 491.372 kb on + strand, within Dshi_0506at 491.373 kb on + strand, within Dshi_0506at 491.373 kb on + strand, within Dshi_0506at 491.373 kb on + strand, within Dshi_0506at 491.378 kb on + strand, within Dshi_0506at 491.380 kb on - strand, within Dshi_0506at 491.383 kb on + strand, within Dshi_0506at 491.458 kb on + strand, within Dshi_0506at 491.468 kb on + strand, within Dshi_0506at 491.492 kb on - strand, within Dshi_0506at 491.537 kb on - strand, within Dshi_0506at 491.570 kb on - strand, within Dshi_0506at 491.629 kb on + strand, within Dshi_0506at 491.639 kb on + strand, within Dshi_0506at 491.647 kb on - strand, within Dshi_0506at 491.658 kb on - strand, within Dshi_0506at 491.733 kb on + strand, within Dshi_0506at 491.733 kb on + strand, within Dshi_0506at 491.767 kb on - strand, within Dshi_0506at 491.791 kb on + strand, within Dshi_0506at 491.817 kb on + strand, within Dshi_0506at 491.820 kb on + strand, within Dshi_0506at 491.828 kb on - strandat 491.883 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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489,299 + Dshi_0504 0.67 -0.6
489,299 + Dshi_0504 0.67 +0.4
489,478 + Dshi_0504 0.73 +1.7
489,615 - Dshi_0504 0.78 +0.4
489,786 + Dshi_0504 0.83 -0.4
489,819 + Dshi_0504 0.85 -0.6
489,819 + Dshi_0504 0.85 +0.2
489,824 + Dshi_0504 0.85 +1.3
489,875 - Dshi_0504 0.86 +0.1
489,882 - Dshi_0504 0.87 +0.2
489,885 - Dshi_0504 0.87 -0.8
489,893 + Dshi_0504 0.87 -0.0
489,955 + Dshi_0504 0.89 +0.4
490,103 + +0.5
490,158 - -0.6
490,158 - -0.2
490,172 + +0.1
490,180 - +0.3
490,186 - -0.4
490,195 - +0.1
490,199 - +1.2
490,210 + +0.3
490,217 + +0.1
490,218 - -0.8
490,251 - -0.6
490,269 + -0.3
490,269 + +1.2
490,269 + -0.4
490,269 + +1.9
490,269 + -0.1
490,277 - -0.5
490,277 - +1.3
490,314 + -0.4
490,354 - Dshi_0505 0.11 -0.5
490,438 + Dshi_0505 0.25 -0.5
490,469 - Dshi_0505 0.30 -0.3
490,484 - Dshi_0505 0.33 -0.3
490,521 + Dshi_0505 0.39 -0.5
490,543 + Dshi_0505 0.43 -0.6
490,566 + Dshi_0505 0.46 -0.2
490,635 - Dshi_0505 0.58 -0.7
490,707 - Dshi_0505 0.70 -0.7
490,731 - Dshi_0505 0.74 -1.2
490,750 - Dshi_0505 0.77 +0.9
490,755 - Dshi_0505 0.78 -0.1
490,825 + Dshi_0505 0.90 +0.9
490,825 - Dshi_0505 0.90 -0.2
490,852 + +0.5
490,884 + +0.1
490,884 + +0.9
490,892 - +0.0
490,958 + -0.5
490,979 + -0.3
490,979 + -0.2
490,987 - +0.4
490,987 - +0.1
490,987 - -0.5
491,102 + Dshi_0506 0.20 -0.1
491,123 + Dshi_0506 0.22 -0.3
491,140 - Dshi_0506 0.23 -0.0
491,150 + Dshi_0506 0.24 -0.3
491,158 - Dshi_0506 0.25 -0.1
491,158 - Dshi_0506 0.25 +0.3
491,184 - Dshi_0506 0.28 +0.9
491,263 + Dshi_0506 0.35 -0.5
491,294 - Dshi_0506 0.38 +0.9
491,305 + Dshi_0506 0.39 -0.2
491,344 + Dshi_0506 0.43 -0.2
491,352 - Dshi_0506 0.44 +0.1
491,352 - Dshi_0506 0.44 +0.3
491,372 + Dshi_0506 0.46 +0.0
491,373 + Dshi_0506 0.46 +0.6
491,373 + Dshi_0506 0.46 -0.4
491,373 + Dshi_0506 0.46 +0.5
491,378 + Dshi_0506 0.47 -0.5
491,380 - Dshi_0506 0.47 +0.4
491,383 + Dshi_0506 0.47 +0.2
491,458 + Dshi_0506 0.54 -0.6
491,468 + Dshi_0506 0.55 -0.3
491,492 - Dshi_0506 0.58 +0.9
491,537 - Dshi_0506 0.62 -0.4
491,570 - Dshi_0506 0.65 +0.2
491,629 + Dshi_0506 0.71 -0.6
491,639 + Dshi_0506 0.72 +0.5
491,647 - Dshi_0506 0.73 -0.3
491,658 - Dshi_0506 0.74 +1.1
491,733 + Dshi_0506 0.81 +1.1
491,733 + Dshi_0506 0.81 -0.7
491,767 - Dshi_0506 0.84 +0.3
491,791 + Dshi_0506 0.87 -0.8
491,817 + Dshi_0506 0.89 +0.5
491,820 + Dshi_0506 0.90 +1.2
491,828 - -0.7
491,883 + -0.9

Or see this region's nucleotide sequence