Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01330

Experiment: Formate with Lithium chloride 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01315 and MMP_RS01320 are separated by 1 nucleotidesMMP_RS01320 and MMP_RS01325 are separated by 12 nucleotidesMMP_RS01325 and MMP_RS01330 overlap by 8 nucleotidesMMP_RS01330 and MMP_RS01335 are separated by 37 nucleotidesMMP_RS01335 and MMP_RS01340 are separated by 57 nucleotidesMMP_RS01340 and MMP_RS01345 are separated by 7 nucleotides MMP_RS01315: MMP_RS01315 - DUF2341 domain-containing protein, at 246,337 to 248,100 _RS01315 MMP_RS01320: MMP_RS01320 - hypothetical protein, at 248,102 to 248,371 _RS01320 MMP_RS01325: MMP_RS01325 - dihydroneopterin aldolase family protein, at 248,384 to 248,758 _RS01325 MMP_RS01330: MMP_RS01330 - DHH family phosphoesterase, at 248,751 to 249,767 _RS01330 MMP_RS01335: MMP_RS01335 - prefoldin subunit beta, at 249,805 to 250,146 _RS01335 MMP_RS01340: MMP_RS01340 - KEOPS complex Pcc1-like subunit, at 250,204 to 250,455 _RS01340 MMP_RS01345: MMP_RS01345 - rRNA maturation protein, at 250,463 to 250,957 _RS01345 Position (kb) 248 249 250Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 247.757 kb on - strand, within MMP_RS01315at 247.782 kb on - strand, within MMP_RS01315at 247.786 kb on - strand, within MMP_RS01315at 247.786 kb on - strand, within MMP_RS01315at 247.790 kb on - strand, within MMP_RS01315at 247.791 kb on + strand, within MMP_RS01315at 247.816 kb on - strand, within MMP_RS01315at 247.819 kb on - strand, within MMP_RS01315at 247.819 kb on - strand, within MMP_RS01315at 247.820 kb on + strand, within MMP_RS01315at 247.822 kb on - strand, within MMP_RS01315at 247.822 kb on - strand, within MMP_RS01315at 247.822 kb on - strand, within MMP_RS01315at 247.822 kb on - strand, within MMP_RS01315at 247.822 kb on - strand, within MMP_RS01315at 247.823 kb on + strand, within MMP_RS01315at 247.823 kb on + strand, within MMP_RS01315at 247.823 kb on + strand, within MMP_RS01315at 247.823 kb on + strand, within MMP_RS01315at 247.823 kb on + strand, within MMP_RS01315at 247.852 kb on - strand, within MMP_RS01315at 247.852 kb on - strand, within MMP_RS01315at 247.852 kb on - strand, within MMP_RS01315at 247.853 kb on + strand, within MMP_RS01315at 247.904 kb on - strand, within MMP_RS01315at 247.905 kb on + strand, within MMP_RS01315at 247.908 kb on - strand, within MMP_RS01315at 247.909 kb on + strand, within MMP_RS01315at 247.925 kb on + strandat 247.927 kb on - strandat 247.927 kb on - strandat 247.929 kb on - strandat 247.929 kb on - strandat 247.929 kb on - strandat 247.930 kb on + strandat 247.931 kb on - strandat 247.931 kb on - strandat 247.931 kb on - strandat 247.932 kb on + strandat 247.932 kb on + strandat 247.992 kb on - strandat 248.018 kb on - strandat 248.047 kb on - strandat 248.081 kb on - strandat 248.143 kb on - strand, within MMP_RS01320at 248.218 kb on - strand, within MMP_RS01320at 248.259 kb on + strand, within MMP_RS01320at 248.261 kb on - strand, within MMP_RS01320at 248.272 kb on - strand, within MMP_RS01320at 248.303 kb on - strand, within MMP_RS01320at 248.371 kb on - strandat 248.400 kb on - strandat 248.400 kb on - strandat 248.405 kb on - strandat 248.435 kb on - strand, within MMP_RS01325at 248.469 kb on + strand, within MMP_RS01325at 248.480 kb on - strand, within MMP_RS01325at 248.486 kb on - strand, within MMP_RS01325at 248.793 kb on + strandat 248.973 kb on - strand, within MMP_RS01330at 248.987 kb on - strand, within MMP_RS01330at 249.032 kb on - strand, within MMP_RS01330at 249.033 kb on + strand, within MMP_RS01330at 249.036 kb on - strand, within MMP_RS01330at 249.036 kb on - strand, within MMP_RS01330at 249.090 kb on + strand, within MMP_RS01330at 249.094 kb on - strand, within MMP_RS01330at 249.094 kb on - strand, within MMP_RS01330at 249.094 kb on - strand, within MMP_RS01330at 249.095 kb on + strand, within MMP_RS01330at 249.095 kb on + strand, within MMP_RS01330at 249.098 kb on - strand, within MMP_RS01330at 249.126 kb on + strand, within MMP_RS01330at 249.181 kb on - strand, within MMP_RS01330at 249.201 kb on - strand, within MMP_RS01330at 249.201 kb on - strand, within MMP_RS01330at 249.202 kb on + strand, within MMP_RS01330at 249.202 kb on + strand, within MMP_RS01330at 249.203 kb on - strand, within MMP_RS01330at 249.203 kb on - strand, within MMP_RS01330at 249.225 kb on - strand, within MMP_RS01330at 249.230 kb on - strand, within MMP_RS01330at 249.231 kb on + strand, within MMP_RS01330at 249.267 kb on + strand, within MMP_RS01330at 249.267 kb on + strand, within MMP_RS01330at 249.271 kb on - strand, within MMP_RS01330at 249.437 kb on - strand, within MMP_RS01330at 249.449 kb on - strand, within MMP_RS01330at 249.450 kb on + strand, within MMP_RS01330at 249.534 kb on - strand, within MMP_RS01330at 249.534 kb on - strand, within MMP_RS01330at 249.534 kb on - strand, within MMP_RS01330at 249.555 kb on - strand, within MMP_RS01330at 249.588 kb on - strand, within MMP_RS01330at 249.604 kb on + strand, within MMP_RS01330at 249.714 kb on - strandat 249.790 kb on - strandat 249.806 kb on - strandat 249.854 kb on - strand, within MMP_RS01335at 249.891 kb on - strand, within MMP_RS01335at 250.181 kb on + strandat 250.192 kb on + strandat 250.202 kb on - strandat 250.206 kb on + strandat 250.226 kb on - strandat 250.226 kb on - strandat 250.227 kb on + strandat 250.260 kb on + strandat 250.265 kb on - strandat 250.458 kb on - strandat 250.603 kb on + strandat 250.606 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Lithium chloride 250 mM
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247,757 - MMP_RS01315 0.80 +1.3
247,782 - MMP_RS01315 0.82 +0.2
247,786 - MMP_RS01315 0.82 +0.7
247,786 - MMP_RS01315 0.82 +0.4
247,790 - MMP_RS01315 0.82 +0.1
247,791 + MMP_RS01315 0.82 +0.4
247,816 - MMP_RS01315 0.84 +0.0
247,819 - MMP_RS01315 0.84 +0.3
247,819 - MMP_RS01315 0.84 +0.5
247,820 + MMP_RS01315 0.84 -0.0
247,822 - MMP_RS01315 0.84 -0.0
247,822 - MMP_RS01315 0.84 +0.4
247,822 - MMP_RS01315 0.84 +0.4
247,822 - MMP_RS01315 0.84 -1.0
247,822 - MMP_RS01315 0.84 -0.1
247,823 + MMP_RS01315 0.84 +0.3
247,823 + MMP_RS01315 0.84 +0.5
247,823 + MMP_RS01315 0.84 -0.9
247,823 + MMP_RS01315 0.84 +0.3
247,823 + MMP_RS01315 0.84 +0.7
247,852 - MMP_RS01315 0.86 -0.3
247,852 - MMP_RS01315 0.86 -0.3
247,852 - MMP_RS01315 0.86 +0.4
247,853 + MMP_RS01315 0.86 +0.5
247,904 - MMP_RS01315 0.89 +0.9
247,905 + MMP_RS01315 0.89 +0.0
247,908 - MMP_RS01315 0.89 +0.1
247,909 + MMP_RS01315 0.89 -0.0
247,925 + +0.1
247,927 - -0.7
247,927 - +0.3
247,929 - +0.5
247,929 - -0.6
247,929 - +0.1
247,930 + +0.0
247,931 - +0.1
247,931 - -0.5
247,931 - -0.3
247,932 + -0.3
247,932 + +0.3
247,992 - +0.2
248,018 - +0.2
248,047 - -0.2
248,081 - -0.4
248,143 - MMP_RS01320 0.15 +0.4
248,218 - MMP_RS01320 0.43 +0.0
248,259 + MMP_RS01320 0.58 +1.3
248,261 - MMP_RS01320 0.59 +0.0
248,272 - MMP_RS01320 0.63 +0.1
248,303 - MMP_RS01320 0.74 -0.4
248,371 - -0.5
248,400 - -2.4
248,400 - -1.2
248,405 - -1.7
248,435 - MMP_RS01325 0.14 -1.4
248,469 + MMP_RS01325 0.23 -1.0
248,480 - MMP_RS01325 0.26 -4.0
248,486 - MMP_RS01325 0.27 -1.2
248,793 + -1.3
248,973 - MMP_RS01330 0.22 -0.5
248,987 - MMP_RS01330 0.23 -1.1
249,032 - MMP_RS01330 0.28 -0.5
249,033 + MMP_RS01330 0.28 -1.6
249,036 - MMP_RS01330 0.28 -1.0
249,036 - MMP_RS01330 0.28 -0.5
249,090 + MMP_RS01330 0.33 -1.1
249,094 - MMP_RS01330 0.34 -1.0
249,094 - MMP_RS01330 0.34 -0.0
249,094 - MMP_RS01330 0.34 +0.0
249,095 + MMP_RS01330 0.34 -1.0
249,095 + MMP_RS01330 0.34 -1.5
249,098 - MMP_RS01330 0.34 -0.6
249,126 + MMP_RS01330 0.37 -0.1
249,181 - MMP_RS01330 0.42 -0.1
249,201 - MMP_RS01330 0.44 -0.5
249,201 - MMP_RS01330 0.44 -0.7
249,202 + MMP_RS01330 0.44 -1.1
249,202 + MMP_RS01330 0.44 -4.1
249,203 - MMP_RS01330 0.44 -1.1
249,203 - MMP_RS01330 0.44 +0.1
249,225 - MMP_RS01330 0.47 -0.7
249,230 - MMP_RS01330 0.47 -0.2
249,231 + MMP_RS01330 0.47 -0.7
249,267 + MMP_RS01330 0.51 -1.0
249,267 + MMP_RS01330 0.51 -0.8
249,271 - MMP_RS01330 0.51 -1.0
249,437 - MMP_RS01330 0.67 -0.2
249,449 - MMP_RS01330 0.69 -1.4
249,450 + MMP_RS01330 0.69 -0.8
249,534 - MMP_RS01330 0.77 -0.6
249,534 - MMP_RS01330 0.77 -1.0
249,534 - MMP_RS01330 0.77 -0.6
249,555 - MMP_RS01330 0.79 -0.6
249,588 - MMP_RS01330 0.82 -1.2
249,604 + MMP_RS01330 0.84 -0.6
249,714 - -0.5
249,790 - -0.7
249,806 - -0.4
249,854 - MMP_RS01335 0.14 -1.0
249,891 - MMP_RS01335 0.25 -0.6
250,181 + +0.2
250,192 + -0.3
250,202 - -0.1
250,206 + -1.1
250,226 - -1.9
250,226 - -1.5
250,227 + -2.1
250,260 + -2.6
250,265 - -3.2
250,458 - -2.2
250,603 + -1.1
250,606 - +0.4

Or see this region's nucleotide sequence