Strain Fitness in Pantoea sp. MT58

Strain Fitness in Pantoea sp. MT58 around IAI47_19470

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
				remove
121,415	-	IAI47_19460	0.48	-1.8
121,541	-	IAI47_19460	0.62	-0.6
121,541	-	IAI47_19460	0.62	-1.1
121,541	-	IAI47_19460	0.62	-1.9
121,541	-	IAI47_19460	0.62	-2.4
121,541	-	IAI47_19460	0.62	-1.9
121,541	-	IAI47_19460	0.62	+2.0
121,541	-	IAI47_19460	0.62	+0.3
121,551	-	IAI47_19460	0.63	-0.1
121,551	-	IAI47_19460	0.63	-2.0
121,553	+	IAI47_19460	0.63	+0.5
121,553	+	IAI47_19460	0.63	-2.1
121,554	-	IAI47_19460	0.63	+1.0
121,650	+	IAI47_19460	0.74	+0.7
121,650	+	IAI47_19460	0.74	+0.3
121,687	-	IAI47_19460	0.78	+0.9
121,696	-	IAI47_19460	0.79	-0.9
121,696	-	IAI47_19460	0.79	-0.9
121,732	+	IAI47_19460	0.83	+3.8
121,747	-	IAI47_19460	0.85	+0.4
121,747	-	IAI47_19460	0.85	+2.5
121,757	+	IAI47_19460	0.86	-0.2
121,757	+	IAI47_19460	0.86	+1.1
121,757	+	IAI47_19460	0.86	+1.6
121,790	+	IAI47_19460	0.90	+1.2
121,790	+	IAI47_19460	0.90	+1.5
121,790	+	IAI47_19460	0.90	-0.9
121,790	+	IAI47_19460	0.90	+1.2
121,790	+	IAI47_19460	0.90	+3.0
121,790	+	IAI47_19460	0.90	+0.3
121,790	+	IAI47_19460	0.90	+1.3
121,790	+	IAI47_19460	0.90	+0.4
121,790	+	IAI47_19460	0.90	-0.3
121,790	+	IAI47_19460	0.90	-0.4
121,791	-	IAI47_19460	0.90	-0.1
121,791	-	IAI47_19460	0.90	-1.4
121,791	-	IAI47_19460	0.90	+1.2
121,791	-	IAI47_19460	0.90	-1.1
121,791	-	IAI47_19460	0.90	-0.1
121,791	-	IAI47_19460	0.90	+0.3
121,791	-	IAI47_19460	0.90	+0.0
121,791	-	IAI47_19460	0.90	+0.9
121,853	-			-2.2
121,853	-			+0.1
121,853	-			-2.4
121,881	-			-1.4
121,881	-			+0.6
121,903	+			+3.2
121,913	-			+0.7
121,913	-			-1.5
121,913	-			-1.1
121,921	+			+0.1
121,921	+			-0.5
121,921	+			-1.5
121,921	+			+0.5
121,921	+			-0.2
121,921	+			-2.1
121,921	+			-0.3
121,921	+			+1.5
121,921	+			+2.1
121,921	+			+1.9
121,921	+			+2.7
121,921	+			+1.5
121,921	+			+1.5
121,922	-			-1.4
121,922	-			+1.0
121,922	-			-0.5
121,922	-			+0.5
121,922	-			+0.6
121,922	-			+2.6
121,922	-			-1.5
121,922	-			-0.7
121,925	+			+3.0
121,925	+			-0.1
121,925	+			+1.2
121,925	+			+0.5
121,926	-			-2.0
121,926	-			-1.4
121,985	+	IAI47_19465	0.19	+0.1
121,986	-	IAI47_19465	0.20	+0.5
121,986	-	IAI47_19465	0.20	+1.4
121,986	-	IAI47_19465	0.20	+3.0
122,010	+	IAI47_19465	0.25	-2.4
122,010	+	IAI47_19465	0.25	+1.5
122,010	+	IAI47_19465	0.25	+1.0
122,011	-	IAI47_19465	0.25	+0.6
122,042	+	IAI47_19465	0.33	+0.5
122,042	+	IAI47_19465	0.33	-0.1
122,043	-	IAI47_19465	0.33	+0.4
122,043	-	IAI47_19465	0.33	-2.1
122,048	-	IAI47_19465	0.34	-0.1
122,051	+	IAI47_19465	0.35	+0.5
122,137	+	IAI47_19465	0.55	+2.3
122,137	+	IAI47_19465	0.55	+1.0
122,138	-	IAI47_19465	0.56	+0.0
122,138	-	IAI47_19465	0.56	-1.7
122,172	+	IAI47_19465	0.64	+0.5
122,172	+	IAI47_19465	0.64	+1.3
122,172	+	IAI47_19465	0.64	-2.5
122,172	+	IAI47_19465	0.64	-0.7
122,172	+	IAI47_19465	0.64	+0.9
122,231	+	IAI47_19465	0.78	+1.3
122,231	+	IAI47_19465	0.78	+2.4
122,231	+	IAI47_19465	0.78	+0.5
122,231	+	IAI47_19465	0.78	+2.5
122,231	+	IAI47_19465	0.78	+1.7
122,231	+	IAI47_19465	0.78	+0.5
122,231	+	IAI47_19465	0.78	+1.1
122,232	-	IAI47_19465	0.78	-2.4
122,232	-	IAI47_19465	0.78	+0.8
122,232	-	IAI47_19465	0.78	-1.1
122,291	+			-0.9
122,312	+			-1.4
122,312	+			-0.1
122,313	-			+0.5
122,313	-			-2.3
122,322	-			-0.3
122,322	-			+0.5
122,345	+			-1.9
122,347	+			-0.7
122,347	+			-2.0
122,347	+			+0.0
122,348	-			+0.7
122,348	-			+1.2
122,392	+			+0.2
122,399	+			-1.1
122,399	+			-0.5
122,400	-			-2.4
122,406	+			-2.1
122,416	+			-0.9
122,416	+			-0.3
122,417	-			+0.3
122,417	-			+2.4
122,417	-			-0.6
122,417	-			-2.8
122,417	-			+0.6
122,442	-			-2.1
122,446	+			+1.9
122,447	-			-2.5
122,474	+			-1.0
122,564	+	IAI47_19470	0.11	-1.4
122,565	-	IAI47_19470	0.11	-2.1
122,565	-	IAI47_19470	0.11	-0.3
122,565	-	IAI47_19470	0.11	-1.0
122,565	-	IAI47_19470	0.11	-0.4
122,567	+	IAI47_19470	0.11	+0.5
122,567	+	IAI47_19470	0.11	-1.2
122,568	-	IAI47_19470	0.11	+1.0
122,568	-	IAI47_19470	0.11	+1.2
122,568	-	IAI47_19470	0.11	-0.5
122,594	+	IAI47_19470	0.13	-2.6
122,594	+	IAI47_19470	0.13	+0.9
122,594	+	IAI47_19470	0.13	+5.3
122,619	+	IAI47_19470	0.14	+0.5
122,620	-	IAI47_19470	0.14	-1.0
122,632	+	IAI47_19470	0.15	+0.5
122,633	-	IAI47_19470	0.15	+0.5
122,701	+	IAI47_19470	0.20	+1.9
122,701	+	IAI47_19470	0.20	+1.5
122,802	-	IAI47_19470	0.27	+0.1
122,812	-	IAI47_19470	0.28	+0.5
122,812	-	IAI47_19470	0.28	+0.2
122,871	-	IAI47_19470	0.32	-2.5
122,887	+	IAI47_19470	0.33	+0.5
122,888	-	IAI47_19470	0.33	-0.4
122,888	-	IAI47_19470	0.33	-1.9
122,894	+	IAI47_19470	0.34	-2.5
122,894	+	IAI47_19470	0.34	+1.5
122,895	-	IAI47_19470	0.34	-2.5
122,906	+	IAI47_19470	0.35	-2.8
122,906	+	IAI47_19470	0.35	+1.0
122,906	+	IAI47_19470	0.35	-1.1
122,906	+	IAI47_19470	0.35	-1.4
122,907	-	IAI47_19470	0.35	-1.2
122,907	-	IAI47_19470	0.35	-3.4
122,907	-	IAI47_19470	0.35	+0.1
122,907	-	IAI47_19470	0.35	+0.1
122,908	+	IAI47_19470	0.35	-0.5
122,908	+	IAI47_19470	0.35	+0.1
122,908	+	IAI47_19470	0.35	+2.2
122,909	-	IAI47_19470	0.35	+0.5
122,909	-	IAI47_19470	0.35	-0.1
122,909	-	IAI47_19470	0.35	-2.9
122,909	-	IAI47_19470	0.35	+0.7
122,909	-	IAI47_19470	0.35	-1.6
122,994	+	IAI47_19470	0.41	-1.7
122,995	-	IAI47_19470	0.41	-1.5
122,995	-	IAI47_19470	0.41	-0.6
123,045	+	IAI47_19470	0.44	-2.5
123,079	+	IAI47_19470	0.47	+1.5
123,079	+	IAI47_19470	0.47	+0.5
123,080	-	IAI47_19470	0.47	-0.5
123,092	+	IAI47_19470	0.48	+0.5
123,101	+	IAI47_19470	0.48	-1.3
123,159	+	IAI47_19470	0.53	-0.0
123,183	-	IAI47_19470	0.54	+0.6
123,183	-	IAI47_19470	0.54	+0.9
123,239	+	IAI47_19470	0.58	+1.6
123,256	+	IAI47_19470	0.59	+1.6
123,256	+	IAI47_19470	0.59	+1.8
123,257	-	IAI47_19470	0.59	+0.8
123,281	+	IAI47_19470	0.61	+1.5
123,282	-	IAI47_19470	0.61	+2.0
123,282	-	IAI47_19470	0.61	+0.8
123,303	+	IAI47_19470	0.63	-0.9
123,414	+	IAI47_19470	0.71	-0.2
123,420	+	IAI47_19470	0.71	+0.1
123,420	+	IAI47_19470	0.71	+0.6
123,420	+	IAI47_19470	0.71	+0.8
123,421	-	IAI47_19470	0.71	+2.3
123,421	-	IAI47_19470	0.71	-0.9
123,421	-	IAI47_19470	0.71	+1.5
123,421	-	IAI47_19470	0.71	-1.5
123,425	+	IAI47_19470	0.71	+1.0
123,510	+	IAI47_19470	0.77	-1.2
123,511	-	IAI47_19470	0.77	-0.3
123,533	-	IAI47_19470	0.79	-2.2
123,549	-	IAI47_19470	0.80	-0.0
123,575	+	IAI47_19470	0.82	-0.0
123,575	+	IAI47_19470	0.82	-2.9
123,575	+	IAI47_19470	0.82	-2.0
123,576	-	IAI47_19470	0.82	+1.9
123,576	-	IAI47_19470	0.82	-1.0
123,576	-	IAI47_19470	0.82	+1.3
123,576	-	IAI47_19470	0.82	-0.5
123,583	+	IAI47_19470	0.82	-1.0
123,583	+	IAI47_19470	0.82	-1.7
123,583	+	IAI47_19470	0.82	+0.5
123,583	+	IAI47_19470	0.82	-0.1
123,584	-	IAI47_19470	0.83	+0.9
123,584	-	IAI47_19470	0.83	-0.1
123,584	-	IAI47_19470	0.83	+1.3
123,584	-	IAI47_19470	0.83	-2.0
123,584	-	IAI47_19470	0.83	+0.4
123,584	-	IAI47_19470	0.83	+0.1
123,584	-	IAI47_19470	0.83	+0.0
123,584	-	IAI47_19470	0.83	+0.2
123,584	-	IAI47_19470	0.83	-1.4
123,584	-	IAI47_19470	0.83	-0.1
123,584	-	IAI47_19470	0.83	+1.6
123,648	+	IAI47_19470	0.87	-0.5
123,648	+	IAI47_19470	0.87	-0.0
123,648	+	IAI47_19470	0.87	+0.5
123,649	-	IAI47_19470	0.87	-2.5
123,649	-	IAI47_19470	0.87	+2.2
123,649	-	IAI47_19470	0.87	+1.9
123,673	+	IAI47_19470	0.89	-2.4
123,674	-	IAI47_19470	0.89	-1.4
123,674	-	IAI47_19470	0.89	-0.1
123,764	+			+0.7
123,764	+			-0.2
123,764	+			+1.5
123,764	+			+1.1
123,764	+			+0.0
123,764	+			-0.1
123,765	-			+1.5
123,765	-			+0.0
123,832	+			-1.1
123,832	+			-0.9
123,832	+			-0.1
123,833	-			+0.3
123,833	-			+1.5
123,880	+			+0.5
124,126	+	IAI47_19475	0.17	-1.5
124,127	-	IAI47_19475	0.17	+0.5
124,127	-	IAI47_19475	0.17	-1.5
124,298	+	IAI47_19475	0.30	-1.0
124,298	+	IAI47_19475	0.30	-0.1
124,298	+	IAI47_19475	0.30	-1.3
124,298	+	IAI47_19475	0.30	+1.6
124,299	-	IAI47_19475	0.30	+2.1
124,299	-	IAI47_19475	0.30	-0.1
124,299	-	IAI47_19475	0.30	-2.6
124,299	-	IAI47_19475	0.30	+1.5
124,299	-	IAI47_19475	0.30	-1.4
124,438	+	IAI47_19475	0.41	-1.0
124,438	+	IAI47_19475	0.41	+0.5
124,438	+	IAI47_19475	0.41	-1.2
124,439	-	IAI47_19475	0.41	+0.8
124,439	-	IAI47_19475	0.41	+1.9
124,439	-	IAI47_19475	0.41	+0.5
124,439	-	IAI47_19475	0.41	-2.0
124,527	+	IAI47_19475	0.48	-2.7
124,527	+	IAI47_19475	0.48	-1.9
124,528	-	IAI47_19475	0.48	+0.7
124,528	-	IAI47_19475	0.48	-1.2
124,568	-	IAI47_19475	0.51	-3.6
124,568	-	IAI47_19475	0.51	+1.0
124,679	+	IAI47_19475	0.60	-0.1
124,727	+	IAI47_19475	0.64	-3.4
124,727	+	IAI47_19475	0.64	+1.5
124,727	+	IAI47_19475	0.64	-0.4
124,727	+	IAI47_19475	0.64	+2.6
124,728	-	IAI47_19475	0.64	-2.7
124,728	-	IAI47_19475	0.64	+0.8
124,767	+	IAI47_19475	0.67	-0.5
124,768	-	IAI47_19475	0.67	-1.7

Or see this region's nucleotide sequence