Strain Fitness in Pantoea sp. MT58 around IAI47_14395

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,038,193	+		IAI47_14385	0.38	+0.4
3,038,193	+		IAI47_14385	0.38	-1.0
3,038,193	+		IAI47_14385	0.38	+0.1
3,038,193	+		IAI47_14385	0.38	-0.3
3,038,193	+		IAI47_14385	0.38	-1.8
3,038,194	-		IAI47_14385	0.38	-0.2
3,038,194	-		IAI47_14385	0.38	+0.2
3,038,194	-		IAI47_14385	0.38	+0.8
3,038,194	-		IAI47_14385	0.38	-0.6
3,038,195	-		IAI47_14385	0.38	+0.3
3,038,208	+		IAI47_14385	0.40	-0.2
3,038,208	+		IAI47_14385	0.40	-0.5
3,038,208	+		IAI47_14385	0.40	+1.4
3,038,209	-		IAI47_14385	0.40	+1.1
3,038,209	-		IAI47_14385	0.40	-1.2
3,038,209	-		IAI47_14385	0.40	-0.4
3,038,209	-		IAI47_14385	0.40	-0.7
3,038,298	+		IAI47_14385	0.50	-1.8
3,038,298	+		IAI47_14385	0.50	+1.3
3,038,298	+		IAI47_14385	0.50	-0.8
3,038,298	+		IAI47_14385	0.50	-0.8
3,038,417	+		IAI47_14385	0.63	+2.1
3,038,417	+		IAI47_14385	0.63	+1.4
3,038,418	-		IAI47_14385	0.63	+0.6
3,038,418	-		IAI47_14385	0.63	-1.7
3,038,418	-		IAI47_14385	0.63	+2.1
3,038,470	-		IAI47_14385	0.69	-2.4
3,038,470	-		IAI47_14385	0.69	-1.5
3,038,487	+		IAI47_14385	0.70	-0.9
3,038,487	+		IAI47_14385	0.70	+1.5
3,038,487	+		IAI47_14385	0.70	-0.6
3,038,487	+		IAI47_14385	0.70	+0.6
3,038,487	+		IAI47_14385	0.70	+0.3
3,038,487	+		IAI47_14385	0.70	-2.1
3,038,488	-		IAI47_14385	0.70	-0.8
3,038,488	-		IAI47_14385	0.70	-0.4
3,038,488	-		IAI47_14385	0.70	-2.2
3,038,488	-		IAI47_14385	0.70	+0.3
3,038,488	-		IAI47_14385	0.70	-2.2
3,038,488	-		IAI47_14385	0.70	-0.9
3,038,488	-		IAI47_14385	0.70	+1.2
3,038,488	-		IAI47_14385	0.70	+0.3
3,038,488	-		IAI47_14385	0.70	-0.9
3,038,541	+		IAI47_14385	0.76	+0.3
3,038,541	+		IAI47_14385	0.76	+2.0
3,038,541	+		IAI47_14385	0.76	+1.8
3,038,541	+		IAI47_14385	0.76	-0.7
3,038,541	+		IAI47_14385	0.76	-0.2
3,038,542	-		IAI47_14385	0.76	-1.6
3,038,583	+		IAI47_14385	0.81	+0.5
3,038,584	-		IAI47_14385	0.81	+1.5
3,038,599	+		IAI47_14385	0.83	+1.0
3,038,599	+		IAI47_14385	0.83	+1.1
3,038,600	-		IAI47_14385	0.83	+1.1
3,038,600	-		IAI47_14385	0.83	-0.6
3,038,617	+		IAI47_14385	0.85	-1.7
3,038,617	+		IAI47_14385	0.85	-2.4
3,038,618	-		IAI47_14385	0.85	+1.2
3,038,652	+		IAI47_14385	0.88	-0.2
3,038,652	+		IAI47_14385	0.88	+2.4
3,038,653	-		IAI47_14385	0.89	+1.2
3,038,772	-				-3.1
3,038,812	+		IAI47_14390	0.12	-0.8
3,038,812	+		IAI47_14390	0.12	+2.3
3,038,813	-		IAI47_14390	0.13	-3.1
3,038,813	-		IAI47_14390	0.13	-1.0
3,038,813	-		IAI47_14390	0.13	+0.5
3,038,813	-		IAI47_14390	0.13	-0.8
3,038,847	+		IAI47_14390	0.20	+0.2
3,038,848	-		IAI47_14390	0.20	-1.2
3,038,877	-		IAI47_14390	0.27	-0.6
3,038,970	+		IAI47_14390	0.48	+1.9
3,039,053	+		IAI47_14390	0.66	+2.8
3,039,053	+		IAI47_14390	0.66	+1.4
3,039,053	+		IAI47_14390	0.66	-0.2
3,039,053	+		IAI47_14390	0.66	-0.9
3,039,053	+		IAI47_14390	0.66	+0.1
3,039,054	-		IAI47_14390	0.66	-1.7
3,039,054	-		IAI47_14390	0.66	+4.8
3,039,054	-		IAI47_14390	0.66	+0.0
3,039,054	-		IAI47_14390	0.66	-0.7
3,039,054	-		IAI47_14390	0.66	-0.3
3,039,188	+				+1.0
3,039,189	-				-0.9
3,039,223	+				-0.3
3,039,224	-				-1.9
3,039,298	+		IAI47_14395	0.26	-1.0
3,039,299	-		IAI47_14395	0.27	+0.8
3,039,299	-		IAI47_14395	0.27	+2.7
3,039,299	-		IAI47_14395	0.27	+2.0
3,039,299	-		IAI47_14395	0.27	-1.9
3,039,446	+		IAI47_14395	0.63	+1.4
3,039,446	+		IAI47_14395	0.63	+1.4
3,039,447	-		IAI47_14395	0.63	+0.1
3,039,447	-		IAI47_14395	0.63	-0.6
3,039,447	-		IAI47_14395	0.63	+1.8
3,039,455	+		IAI47_14395	0.65	-0.3
3,039,455	+		IAI47_14395	0.65	+2.0
3,039,456	-		IAI47_14395	0.65	-1.4
3,039,456	-		IAI47_14395	0.65	-0.6
3,039,456	-		IAI47_14395	0.65	-0.8
3,039,456	-		IAI47_14395	0.65	+0.2
3,039,456	-		IAI47_14395	0.65	+0.2
3,039,478	+		IAI47_14395	0.71	+0.2
3,039,479	-		IAI47_14395	0.71	+0.2
3,039,479	-		IAI47_14395	0.71	+0.3
3,039,480	+		IAI47_14395	0.71	+0.8
3,039,480	+		IAI47_14395	0.71	-1.2
3,039,480	+		IAI47_14395	0.71	+1.1
3,039,480	+		IAI47_14395	0.71	+1.6
3,039,480	+		IAI47_14395	0.71	+0.6
3,039,480	+		IAI47_14395	0.71	+1.5
3,039,481	-		IAI47_14395	0.72	-0.5
3,039,481	-		IAI47_14395	0.72	+0.8
3,039,481	-		IAI47_14395	0.72	-1.7
3,039,481	-		IAI47_14395	0.72	+0.4
3,039,481	-		IAI47_14395	0.72	+0.8
3,039,481	-		IAI47_14395	0.72	+1.3
3,039,481	-		IAI47_14395	0.72	-2.0
3,039,481	-		IAI47_14395	0.72	-0.8
3,039,490	-		IAI47_14395	0.74	-1.0
3,039,537	+		IAI47_14395	0.85	-1.2
3,039,637	+				+0.8
3,039,637	+				-1.1
3,039,637	+				+1.6
3,039,637	+				-1.8
3,039,638	-				-0.1
3,039,638	-				-0.6
3,039,638	-				-1.0
3,039,638	-				-0.7
3,039,638	-				-1.7
3,039,677	-				-0.8
3,039,692	+				-1.0
3,039,692	+				-1.8
3,039,692	+				+1.4
3,039,692	+				+0.5
3,039,693	-				-2.5
3,039,693	-				-0.0
3,039,693	-				-2.5
3,039,693	-				-1.1
3,039,693	-				-0.2
3,039,693	-				-2.6
3,039,704	+				+1.3
3,039,704	+				+0.4
3,039,704	+				+0.4
3,039,704	+				-0.6
3,039,704	+				+0.0
3,039,704	+				-0.6
3,039,704	+				+1.0
3,039,705	-				+0.6
3,039,727	+				-2.6
3,039,727	+				-0.4
3,039,728	-				+1.4
3,039,728	-				-1.1
3,039,854	+				+1.2
3,039,855	-				-1.4
3,040,001	+		IAI47_14400	0.12	-0.3
3,040,001	+		IAI47_14400	0.12	+0.3
3,040,002	-		IAI47_14400	0.12	-0.4
3,040,002	-		IAI47_14400	0.12	-1.1
3,040,150	+		IAI47_14400	0.18	-0.1
3,040,151	-		IAI47_14400	0.18	-0.1
3,040,151	-		IAI47_14400	0.18	-2.9
3,040,151	-		IAI47_14400	0.18	+0.3
3,040,151	-		IAI47_14400	0.18	+2.2
3,040,373	-		IAI47_14400	0.27	-2.2
3,040,410	+		IAI47_14400	0.29	-2.6
3,040,457	+		IAI47_14400	0.30	-0.3
3,040,494	+		IAI47_14400	0.32	+1.3
3,040,494	+		IAI47_14400	0.32	-0.4
3,040,494	+		IAI47_14400	0.32	-0.6
3,040,494	+		IAI47_14400	0.32	+0.2
3,040,494	+		IAI47_14400	0.32	+0.3
3,040,495	-		IAI47_14400	0.32	-0.6
3,040,495	-		IAI47_14400	0.32	-0.6
3,040,495	-		IAI47_14400	0.32	-0.5
3,040,502	+		IAI47_14400	0.32	-1.7
3,040,502	+		IAI47_14400	0.32	-1.0
3,040,503	-		IAI47_14400	0.32	-1.1
3,040,503	-		IAI47_14400	0.32	-1.3
3,040,503	-		IAI47_14400	0.32	-1.0
3,040,551	+		IAI47_14400	0.34	+0.3
3,040,552	-		IAI47_14400	0.34	-2.2
3,040,552	-		IAI47_14400	0.34	-0.1