Strain Fitness in Pantoea sp. MT58 around IAI47_07050

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,488,983	-		IAI47_07045	0.34	+2.1
1,489,029	+		IAI47_07045	0.38	-2.8
1,489,029	+		IAI47_07045	0.38	+1.3
1,489,030	-		IAI47_07045	0.38	-0.2
1,489,030	-		IAI47_07045	0.38	-0.8
1,489,030	-		IAI47_07045	0.38	-0.2
1,489,030	-		IAI47_07045	0.38	-0.5
1,489,030	-		IAI47_07045	0.38	+0.7
1,489,031	+		IAI47_07045	0.38	-1.6
1,489,031	+		IAI47_07045	0.38	+1.4
1,489,031	+		IAI47_07045	0.38	-0.1
1,489,031	+		IAI47_07045	0.38	-1.9
1,489,032	-		IAI47_07045	0.38	+2.7
1,489,132	+		IAI47_07045	0.46	+0.1
1,489,132	+		IAI47_07045	0.46	-3.3
1,489,133	-		IAI47_07045	0.46	+1.0
1,489,255	+		IAI47_07045	0.55	+0.0
1,489,304	+		IAI47_07045	0.59	+1.8
1,489,305	-		IAI47_07045	0.59	+1.9
1,489,305	-		IAI47_07045	0.59	+0.9
1,489,380	+		IAI47_07045	0.65	-1.6
1,489,380	+		IAI47_07045	0.65	-0.5
1,489,380	+		IAI47_07045	0.65	-0.0
1,489,380	+		IAI47_07045	0.65	+0.4
1,489,381	-		IAI47_07045	0.65	+0.6
1,489,381	-		IAI47_07045	0.65	-2.7
1,489,381	-		IAI47_07045	0.65	-0.3
1,489,381	-		IAI47_07045	0.65	-1.4
1,489,382	+		IAI47_07045	0.65	+0.1
1,489,383	-		IAI47_07045	0.65	+0.2
1,489,513	-		IAI47_07045	0.75	-1.8
1,489,536	+		IAI47_07045	0.77	-0.9
1,489,537	-		IAI47_07045	0.77	-0.2
1,489,557	+		IAI47_07045	0.78	+0.4
1,489,557	+		IAI47_07045	0.78	-1.3
1,489,557	+		IAI47_07045	0.78	-2.2
1,489,558	-		IAI47_07045	0.79	+0.3
1,489,558	-		IAI47_07045	0.79	+1.7
1,489,558	-		IAI47_07045	0.79	+0.2
1,489,611	+		IAI47_07045	0.83	-0.0
1,489,612	-		IAI47_07045	0.83	-0.7
1,489,612	-		IAI47_07045	0.83	+2.3
1,489,612	-		IAI47_07045	0.83	-0.9
1,489,677	-		IAI47_07045	0.88	-1.8
1,489,702	-		IAI47_07045	0.90	+0.5
1,489,739	+				+2.3
1,489,739	+				-0.7
1,489,739	+				-0.0
1,489,739	+				-2.0
1,489,740	-				+2.8
1,489,740	-				-0.6
1,489,740	-				-0.6
1,489,740	-				+2.0
1,489,836	+				-0.3
1,489,836	+				+2.3
1,489,837	-				+1.4
1,489,844	+				+0.4
1,489,844	+				+1.5
1,489,844	+				+1.5
1,489,845	-				+0.9
1,489,845	-				-0.8
1,489,845	-				+2.4
1,489,845	-				+1.2
1,489,845	-				+0.2
1,489,854	+				+1.7
1,489,854	+				+0.5
1,489,854	+				+2.4
1,489,855	-				+0.4
1,489,855	-				+2.1
1,489,893	+				+0.7
1,489,898	+				-0.2
1,489,898	+				-0.9
1,489,898	+				-0.5
1,489,898	+				-1.2
1,489,898	+				+0.1
1,489,898	+				-1.6
1,489,899	-				-0.6
1,489,899	-				-1.8
1,489,899	-				+0.7
1,489,899	-				+1.5
1,489,899	-				-1.6
1,489,899	-				-0.4
1,489,899	-				-1.3
1,489,899	-				-3.4
1,489,899	-				-0.6
1,489,900	+				-0.3
1,489,900	+				-1.3
1,489,901	-				-0.0
1,489,944	+				+0.8
1,489,945	-				-0.9
1,489,945	-				-0.1
1,489,954	+				+2.0
1,489,955	-				-2.7
1,489,960	+				-2.4
1,489,961	-				-2.7
1,489,961	-				+1.7
1,489,961	-				+0.2
1,489,974	+				+1.0
1,489,975	-				-1.6
1,490,107	+		IAI47_07050	0.21	+0.5
1,490,186	+		IAI47_07050	0.31	+1.8
1,490,186	+		IAI47_07050	0.31	+1.5
1,490,187	-		IAI47_07050	0.31	+0.8
1,490,241	+		IAI47_07050	0.38	+0.7
1,490,241	+		IAI47_07050	0.38	-1.3
1,490,242	-		IAI47_07050	0.38	+1.7
1,490,242	-		IAI47_07050	0.38	-1.3
1,490,286	+		IAI47_07050	0.43	-0.6
1,490,354	+		IAI47_07050	0.52	-0.1
1,490,354	+		IAI47_07050	0.52	-1.8
1,490,355	-		IAI47_07050	0.52	+0.9
1,490,355	-		IAI47_07050	0.52	-0.9
1,490,378	+		IAI47_07050	0.55	-0.9
1,490,379	-		IAI47_07050	0.55	-0.2
1,490,379	-		IAI47_07050	0.55	+0.9
1,490,397	+		IAI47_07050	0.57	+0.6
1,490,397	+		IAI47_07050	0.57	+0.1
1,490,398	-		IAI47_07050	0.57	-0.2
1,490,398	-		IAI47_07050	0.57	-1.1
1,490,426	-		IAI47_07050	0.61	-1.9
1,490,473	+		IAI47_07050	0.67	+1.6
1,490,474	-		IAI47_07050	0.67	-0.3
1,490,546	-		IAI47_07050	0.76	+4.0
1,490,546	-		IAI47_07050	0.76	-2.5
1,490,568	-		IAI47_07050	0.79	-0.7
1,490,569	+		IAI47_07050	0.79	+1.0
1,490,570	-		IAI47_07050	0.79	+1.7
1,490,619	+		IAI47_07050	0.85	-0.6
1,490,620	-		IAI47_07050	0.85	-0.6
1,490,620	-		IAI47_07050	0.85	-0.5
1,490,746	+				-0.9
1,490,746	+				-1.8
1,490,746	+				-0.1
1,490,747	-				+0.1
1,490,767	+				-1.0
1,490,767	+				+0.9
1,490,768	-				-0.4
1,490,768	-				+0.1
1,490,768	-				+0.8
1,490,768	-				+1.3
1,490,776	+				+2.0
1,490,802	+				-0.1
1,490,802	+				+1.7
1,490,803	-				-0.2
1,490,803	-				+0.1
1,490,803	-				+1.5
1,490,810	+				-0.9
1,490,811	-				-1.5
1,490,971	+				-0.9
1,490,972	-		IAI47_07055	0.36	-0.1
1,490,982	-		IAI47_07055	0.38	-0.8
1,490,998	+		IAI47_07055	0.41	+1.8
1,491,058	+		IAI47_07055	0.54	+0.7
1,491,059	-		IAI47_07055	0.54	-0.6
1,491,059	-		IAI47_07055	0.54	-1.2
1,491,059	-		IAI47_07055	0.54	-2.8
1,491,125	+		IAI47_07055	0.68	+1.0
1,491,126	-		IAI47_07055	0.68	-2.5
1,491,126	-		IAI47_07055	0.68	-1.6
1,491,126	-		IAI47_07055	0.68	-0.2
1,491,226	-		IAI47_07055	0.89	-3.0
1,491,307	+				-2.7
1,491,307	+				+0.1
1,491,307	+				+0.0
1,491,308	-				-2.0
1,491,308	-				-0.5
1,491,308	-				-0.6
1,491,380	+				-1.4
1,491,380	+				-1.7
1,491,380	+				-0.0
1,491,381	-				+0.5
1,491,381	-				+1.9
1,491,381	-				+0.5
1,491,381	-				-0.2
1,491,381	-				+1.5
1,491,381	-				+0.8
1,491,381	-				+1.6
1,491,382	+				-1.6
1,491,382	+				-2.1
1,491,382	+				+0.3
1,491,383	-				-1.3
1,491,383	-				+1.6
1,491,383	-				-1.6
1,491,383	-				+0.2
1,491,383	-				+0.8
1,491,383	-				+0.3
1,491,383	-				+0.0
1,491,383	-				-3.2
1,491,383	-				-0.7
1,491,383	-				-3.0
1,491,383	-				+0.3
1,491,393	+				+1.1
1,491,394	-				-1.3
1,491,394	-				-1.5
1,491,394	-				-0.6
1,491,394	-				+0.3
1,491,394	-				+2.1
1,491,394	-				-2.5
1,491,394	-				+0.7
1,491,397	+				-0.9
1,491,418	+				-2.1
1,491,452	+				+1.4
1,491,452	+				+0.1
1,491,471	+		IAI47_07060	0.13	-0.6
1,491,471	+		IAI47_07060	0.13	+1.0
1,491,471	+		IAI47_07060	0.13	+0.0
1,491,472	-		IAI47_07060	0.13	-0.4
1,491,472	-		IAI47_07060	0.13	-3.5
1,491,472	-		IAI47_07060	0.13	+0.9
1,491,472	-		IAI47_07060	0.13	+2.9
1,491,472	-		IAI47_07060	0.13	+1.5
1,491,472	-		IAI47_07060	0.13	-0.6
1,491,588	+		IAI47_07060	0.32	+1.4
1,491,604	-		IAI47_07060	0.35	-1.4
1,491,604	-		IAI47_07060	0.35	+0.1
1,491,657	+		IAI47_07060	0.43	+0.5
1,491,657	+		IAI47_07060	0.43	+0.5
1,491,657	+		IAI47_07060	0.43	-2.7
1,491,657	+		IAI47_07060	0.43	-1.1
1,491,658	-		IAI47_07060	0.43	+1.0
1,491,658	-		IAI47_07060	0.43	-0.6