Strain Fitness in Pantoea sp. MT58 around IAI47_06665

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,387,733	-		IAI47_06660	0.52	-1.3
1,387,733	-		IAI47_06660	0.52	+0.5
1,387,786	+		IAI47_06660	0.55	-1.4
1,387,787	-		IAI47_06660	0.55	-0.6
1,387,818	+		IAI47_06660	0.57	-1.8
1,387,818	+		IAI47_06660	0.57	+1.7
1,387,818	+		IAI47_06660	0.57	-2.1
1,387,825	+		IAI47_06660	0.57	-1.0
1,387,829	-		IAI47_06660	0.58	+0.7
1,387,841	-		IAI47_06660	0.58	-0.3
1,387,894	+		IAI47_06660	0.61	-1.9
1,387,894	+		IAI47_06660	0.61	-2.9
1,387,894	+		IAI47_06660	0.61	+0.3
1,387,894	+		IAI47_06660	0.61	-0.4
1,387,894	+		IAI47_06660	0.61	+0.7
1,387,895	-		IAI47_06660	0.61	-1.8
1,387,921	+		IAI47_06660	0.63	+1.4
1,387,922	-		IAI47_06660	0.63	-0.4
1,387,964	+		IAI47_06660	0.65	-2.7
1,387,964	+		IAI47_06660	0.65	+0.1
1,387,964	+		IAI47_06660	0.65	-2.4
1,387,964	+		IAI47_06660	0.65	+0.4
1,387,964	+		IAI47_06660	0.65	+0.9
1,387,964	+		IAI47_06660	0.65	-0.7
1,387,964	+		IAI47_06660	0.65	+0.5
1,387,964	+		IAI47_06660	0.65	-1.5
1,387,964	+		IAI47_06660	0.65	-1.3
1,387,964	+		IAI47_06660	0.65	-0.9
1,387,964	+		IAI47_06660	0.65	+1.4
1,387,965	-		IAI47_06660	0.66	+3.3
1,387,965	-		IAI47_06660	0.66	+0.2
1,387,965	-		IAI47_06660	0.66	+0.3
1,387,965	-		IAI47_06660	0.66	-0.1
1,387,965	-		IAI47_06660	0.66	-0.6
1,387,965	-		IAI47_06660	0.66	+0.1
1,387,965	-		IAI47_06660	0.66	-0.5
1,388,020	+		IAI47_06660	0.69	+1.1
1,388,020	+		IAI47_06660	0.69	+0.1
1,388,111	+		IAI47_06660	0.74	+0.8
1,388,111	+		IAI47_06660	0.74	+0.4
1,388,112	-		IAI47_06660	0.74	+1.1
1,388,131	-		IAI47_06660	0.75	+0.8
1,388,147	+		IAI47_06660	0.76	+0.9
1,388,147	+		IAI47_06660	0.76	-0.7
1,388,147	+		IAI47_06660	0.76	+0.1
1,388,147	+		IAI47_06660	0.76	-0.3
1,388,147	+		IAI47_06660	0.76	-2.1
1,388,147	+		IAI47_06660	0.76	-0.5
1,388,147	+		IAI47_06660	0.76	-2.0
1,388,147	+		IAI47_06660	0.76	-1.2
1,388,148	-		IAI47_06660	0.76	-0.6
1,388,148	-		IAI47_06660	0.76	-2.5
1,388,148	-		IAI47_06660	0.76	-0.3
1,388,148	-		IAI47_06660	0.76	-1.3
1,388,148	-		IAI47_06660	0.76	-2.6
1,388,148	-		IAI47_06660	0.76	+2.1
1,388,148	-		IAI47_06660	0.76	-2.2
1,388,148	-		IAI47_06660	0.76	-1.9
1,388,148	-		IAI47_06660	0.76	-0.1
1,388,148	-		IAI47_06660	0.76	+1.7
1,388,209	+		IAI47_06660	0.80	-1.1
1,388,228	-		IAI47_06660	0.81	-2.2
1,388,257	+		IAI47_06660	0.83	-1.6
1,388,257	+		IAI47_06660	0.83	+3.5
1,388,257	+		IAI47_06660	0.83	+1.4
1,388,258	-		IAI47_06660	0.83	-0.5
1,388,287	+		IAI47_06660	0.84	-0.3
1,388,287	+		IAI47_06660	0.84	+0.1
1,388,288	-		IAI47_06660	0.84	+0.1
1,388,347	+		IAI47_06660	0.88	-0.2
1,388,348	-		IAI47_06660	0.88	-1.1
1,388,348	-		IAI47_06660	0.88	+1.5
1,388,427	+				+2.7
1,388,427	+				+0.2
1,388,428	-				+1.0
1,388,428	-				-0.6
1,388,450	-				-0.9
1,388,465	+				+2.9
1,388,488	+				-0.2
1,388,489	-				-0.1
1,388,511	-				-1.3
1,388,517	+				+0.7
1,388,569	+				+0.3
1,388,585	+				+1.5
1,388,585	+				-2.0
1,388,585	+				+1.7
1,388,586	-				+0.7
1,388,586	-				+0.1
1,388,586	-				+2.0
1,388,588	+				-1.0
1,388,588	+				+2.1
1,388,589	-				+1.7
1,388,620	+				-0.6
1,388,620	+				+1.7
1,388,620	+				-1.5
1,388,664	+				-2.6
1,388,664	+				+0.2
1,388,665	-				+0.4
1,388,665	-				-0.6
1,388,776	+				+0.6
1,388,779	+				+0.9
1,388,779	+				-0.7
1,388,779	+				+0.3
1,388,780	-				-0.5
1,388,780	-				-2.6
1,388,780	-				-0.6
1,388,780	-				-1.6
1,388,792	+				-2.4
1,388,793	-				-1.0
1,388,800	+				-2.2
1,388,800	+				+0.8
1,388,800	+				+0.6
1,388,800	+				+0.4
1,388,801	-				-0.0
1,388,801	-				-1.3
1,388,833	+		IAI47_06665	0.13	+0.4
1,388,833	+		IAI47_06665	0.13	+2.2
1,388,834	-		IAI47_06665	0.13	+1.3
1,388,834	-		IAI47_06665	0.13	+0.5
1,388,915	-		IAI47_06665	0.23	+1.4
1,388,915	-		IAI47_06665	0.23	+0.8
1,388,915	-		IAI47_06665	0.23	-0.1
1,388,934	+		IAI47_06665	0.25	-1.6
1,388,934	+		IAI47_06665	0.25	-0.4
1,388,934	+		IAI47_06665	0.25	-2.3
1,388,935	-		IAI47_06665	0.25	+0.1
1,388,935	-		IAI47_06665	0.25	+1.8
1,388,935	-		IAI47_06665	0.25	-2.4
1,388,935	-		IAI47_06665	0.25	+0.1
1,389,028	+		IAI47_06665	0.36	+1.7
1,389,028	+		IAI47_06665	0.36	+1.0
1,389,028	+		IAI47_06665	0.36	+0.9
1,389,029	-		IAI47_06665	0.37	+1.8
1,389,055	+		IAI47_06665	0.40	+1.0
1,389,056	-		IAI47_06665	0.40	-0.1
1,389,056	-		IAI47_06665	0.40	+1.7
1,389,056	-		IAI47_06665	0.40	+3.0
1,389,073	+		IAI47_06665	0.42	+0.2
1,389,073	+		IAI47_06665	0.42	-2.9
1,389,074	-		IAI47_06665	0.42	-0.1
1,389,074	-		IAI47_06665	0.42	+0.8
1,389,074	-		IAI47_06665	0.42	-0.3
1,389,074	-		IAI47_06665	0.42	+1.5
1,389,109	+		IAI47_06665	0.46	-2.0
1,389,127	+		IAI47_06665	0.48	-0.4
1,389,128	-		IAI47_06665	0.48	-0.0
1,389,281	+		IAI47_06665	0.66	+0.1
1,389,282	-		IAI47_06665	0.66	+0.9
1,389,282	-		IAI47_06665	0.66	+0.5
1,389,282	-		IAI47_06665	0.66	+1.7
1,389,292	+		IAI47_06665	0.68	+0.2
1,389,292	+		IAI47_06665	0.68	+2.1
1,389,293	-		IAI47_06665	0.68	+1.6
1,389,344	-		IAI47_06665	0.74	+2.4
1,389,391	-		IAI47_06665	0.79	+0.6
1,389,391	-		IAI47_06665	0.79	-0.1
1,389,391	-		IAI47_06665	0.79	-0.1
1,389,391	-		IAI47_06665	0.79	+0.3
1,389,470	-		IAI47_06665	0.89	+0.1
1,389,494	+				+0.6
1,389,495	-				-1.1
1,389,495	-				+0.1
1,389,495	-				-1.4
1,389,495	-				+1.0
1,389,556	+				+1.9
1,389,558	+				+1.1
1,389,558	+				+1.7
1,389,558	+				-1.1
1,389,558	+				+0.7
1,389,559	-				-2.1
1,389,559	-				-1.5
1,389,559	-				-0.6
1,389,582	+				+2.3
1,389,582	+				-3.5
1,389,582	+				+0.2
1,389,583	-				-0.6
1,389,583	-				+1.7
1,389,583	-				+0.6
1,389,583	-				+0.4
1,389,680	+				-1.3
1,389,680	+				+0.5
1,389,681	-				+1.7
1,389,681	-				+1.0
1,389,681	-				+0.1
1,389,681	-				-2.0
1,389,722	+				-1.8
1,389,722	+				-0.9
1,389,723	-		IAI47_06670	0.10	+0.4
1,389,723	-		IAI47_06670	0.10	+0.4
1,389,723	-		IAI47_06670	0.10	-1.8
1,389,743	+		IAI47_06670	0.12	+1.6
1,389,835	+		IAI47_06670	0.21	+1.2
1,389,836	-		IAI47_06670	0.21	+2.1
1,389,836	-		IAI47_06670	0.21	-1.2
1,390,063	+		IAI47_06670	0.42	+1.7
1,390,067	+		IAI47_06670	0.43	-0.0
1,390,131	+		IAI47_06670	0.49	+0.3
1,390,131	+		IAI47_06670	0.49	+0.3
1,390,132	-		IAI47_06670	0.49	-0.6
1,390,132	-		IAI47_06670	0.49	+0.8
1,390,135	+		IAI47_06670	0.49	+0.0
1,390,135	+		IAI47_06670	0.49	-1.5
1,390,135	+		IAI47_06670	0.49	+1.2
1,390,135	+		IAI47_06670	0.49	+0.1
1,390,136	-		IAI47_06670	0.49	-1.0
1,390,136	-		IAI47_06670	0.49	-0.8
1,390,136	-		IAI47_06670	0.49	-0.9
1,390,136	-		IAI47_06670	0.49	-0.9
1,390,136	-		IAI47_06670	0.49	+1.0
1,390,174	+		IAI47_06670	0.53	-1.4
1,390,175	-		IAI47_06670	0.53	+0.2
1,390,175	-		IAI47_06670	0.53	+1.2
1,390,175	-		IAI47_06670	0.53	+3.1
1,390,175	-		IAI47_06670	0.53	-0.6
1,390,175	-		IAI47_06670	0.53	+0.1
1,390,205	+		IAI47_06670	0.56	+1.4
1,390,206	-		IAI47_06670	0.56	-0.1
1,390,206	-		IAI47_06670	0.56	-1.2
1,390,226	+		IAI47_06670	0.58	+0.7
1,390,318	+		IAI47_06670	0.66	+1.1
1,390,318	+		IAI47_06670	0.66	+0.6
1,390,318	+		IAI47_06670	0.66	+0.7
1,390,319	-		IAI47_06670	0.66	-1.6
1,390,319	-		IAI47_06670	0.66	-0.1
1,390,321	+		IAI47_06670	0.67	+0.2
1,390,321	+		IAI47_06670	0.67	+3.5
1,390,321	+		IAI47_06670	0.67	+0.0
1,390,321	+		IAI47_06670	0.67	-0.6
1,390,321	+		IAI47_06670	0.67	+1.4
1,390,322	-		IAI47_06670	0.67	+0.1
1,390,322	-		IAI47_06670	0.67	-0.3
1,390,322	-		IAI47_06670	0.67	-1.0
1,390,322	-		IAI47_06670	0.67	-1.0
1,390,322	-		IAI47_06670	0.67	+0.4
1,390,391	+		IAI47_06670	0.73	-0.2
1,390,391	+		IAI47_06670	0.73	+2.7
1,390,391	+		IAI47_06670	0.73	-0.2
1,390,391	+		IAI47_06670	0.73	-1.1
1,390,391	+		IAI47_06670	0.73	-0.9
1,390,392	-		IAI47_06670	0.73	+0.9
1,390,392	-		IAI47_06670	0.73	-0.2
1,390,392	-		IAI47_06670	0.73	-0.5
1,390,452	-		IAI47_06670	0.79	-1.3
1,390,486	+		IAI47_06670	0.82	+1.3
1,390,486	+		IAI47_06670	0.82	+1.4
1,390,486	+		IAI47_06670	0.82	+0.2
1,390,486	+		IAI47_06670	0.82	+0.3
1,390,487	-		IAI47_06670	0.82	-2.2
1,390,487	-		IAI47_06670	0.82	+0.7
1,390,488	+		IAI47_06670	0.82	-1.6
1,390,488	+		IAI47_06670	0.82	-1.9
1,390,489	-		IAI47_06670	0.83	+1.6
1,390,489	-		IAI47_06670	0.83	-0.1
1,390,489	-		IAI47_06670	0.83	+0.1
1,390,495	+		IAI47_06670	0.83	+0.2
1,390,496	-		IAI47_06670	0.83	-0.3