Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03035 and IAI47_03040 are separated by 138 nucleotides IAI47_03040 and IAI47_03045 overlap by 4 nucleotides IAI47_03045 and IAI47_03050 are separated by 74 nucleotides
IAI47_03035: IAI47_03035 - SDR family oxidoreductase, at 627,089 to 627,880
_03035
IAI47_03040: IAI47_03040 - TetR/AcrR family transcriptional regulator, at 628,019 to 628,603
_03040
IAI47_03045: IAI47_03045 - G/U mismatch-specific DNA glycosylase, at 628,600 to 629,118
_03045
IAI47_03050: IAI47_03050 - RNA polymerase sigma factor RpoD, at 629,193 to 631,034
_03050
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 627.634 kb on + strand, within IAI47_03035 at 627.646 kb on + strand, within IAI47_03035 at 627.646 kb on + strand, within IAI47_03035 at 627.646 kb on + strand, within IAI47_03035 at 627.647 kb on - strand, within IAI47_03035 at 627.692 kb on + strand, within IAI47_03035 at 627.692 kb on + strand, within IAI47_03035 at 627.692 kb on + strand, within IAI47_03035 at 627.692 kb on + strand, within IAI47_03035 at 627.693 kb on - strand, within IAI47_03035 at 627.693 kb on - strand, within IAI47_03035 at 627.693 kb on - strand, within IAI47_03035 at 627.795 kb on + strand, within IAI47_03035 at 627.796 kb on - strand, within IAI47_03035 at 627.796 kb on - strand, within IAI47_03035 at 627.796 kb on - strand, within IAI47_03035 at 627.822 kb on + strand at 627.822 kb on + strand at 627.822 kb on + strand at 627.822 kb on + strand at 627.823 kb on - strand at 627.823 kb on - strand at 627.823 kb on - strand at 627.857 kb on + strand at 627.857 kb on + strand at 627.857 kb on + strand at 627.858 kb on - strand at 627.858 kb on - strand at 627.858 kb on - strand at 627.955 kb on + strand at 627.969 kb on + strand at 627.969 kb on + strand at 627.969 kb on + strand at 627.970 kb on - strand at 627.970 kb on - strand at 627.973 kb on + strand at 627.974 kb on - strand at 627.976 kb on + strand at 627.976 kb on + strand at 627.976 kb on + strand at 627.976 kb on + strand at 627.976 kb on + strand at 627.976 kb on + strand at 627.976 kb on + strand at 627.977 kb on - strand at 627.977 kb on - strand at 627.977 kb on - strand at 627.978 kb on + strand at 627.978 kb on + strand at 627.978 kb on + strand at 627.978 kb on + strand at 627.978 kb on + strand at 627.979 kb on - strand at 627.979 kb on - strand at 627.979 kb on - strand at 627.979 kb on - strand at 627.979 kb on - strand at 627.979 kb on - strand at 627.981 kb on + strand at 627.981 kb on + strand at 627.981 kb on + strand at 627.982 kb on - strand at 627.982 kb on - strand at 627.982 kb on - strand at 628.000 kb on + strand at 628.001 kb on - strand at 628.001 kb on - strand at 628.057 kb on + strand at 628.057 kb on + strand at 628.057 kb on + strand at 628.058 kb on - strand at 628.157 kb on + strand, within IAI47_03040 at 628.157 kb on + strand, within IAI47_03040 at 628.157 kb on + strand, within IAI47_03040 at 628.157 kb on + strand, within IAI47_03040 at 628.157 kb on + strand, within IAI47_03040 at 628.157 kb on + strand, within IAI47_03040 at 628.157 kb on + strand, within IAI47_03040 at 628.157 kb on + strand, within IAI47_03040 at 628.158 kb on - strand, within IAI47_03040 at 628.158 kb on - strand, within IAI47_03040 at 628.158 kb on - strand, within IAI47_03040 at 628.158 kb on - strand, within IAI47_03040 at 628.207 kb on + strand, within IAI47_03040 at 628.207 kb on + strand, within IAI47_03040 at 628.207 kb on + strand, within IAI47_03040 at 628.207 kb on + strand, within IAI47_03040 at 628.207 kb on + strand, within IAI47_03040 at 628.207 kb on + strand, within IAI47_03040 at 628.207 kb on + strand, within IAI47_03040 at 628.208 kb on - strand, within IAI47_03040 at 628.208 kb on - strand, within IAI47_03040 at 628.208 kb on - strand, within IAI47_03040 at 628.226 kb on - strand, within IAI47_03040 at 628.240 kb on + strand, within IAI47_03040 at 628.240 kb on + strand, within IAI47_03040 at 628.241 kb on - strand, within IAI47_03040 at 628.241 kb on - strand, within IAI47_03040 at 628.285 kb on + strand, within IAI47_03040 at 628.285 kb on + strand, within IAI47_03040 at 628.285 kb on + strand, within IAI47_03040 at 628.285 kb on + strand, within IAI47_03040 at 628.285 kb on + strand, within IAI47_03040 at 628.285 kb on + strand, within IAI47_03040 at 628.286 kb on - strand, within IAI47_03040 at 628.286 kb on - strand, within IAI47_03040 at 628.286 kb on - strand, within IAI47_03040 at 628.286 kb on - strand, within IAI47_03040 at 628.289 kb on + strand, within IAI47_03040 at 628.289 kb on + strand, within IAI47_03040 at 628.290 kb on - strand, within IAI47_03040 at 628.290 kb on - strand, within IAI47_03040 at 628.290 kb on - strand, within IAI47_03040 at 628.290 kb on - strand, within IAI47_03040 at 628.290 kb on - strand, within IAI47_03040 at 628.290 kb on - strand, within IAI47_03040 at 628.290 kb on - strand, within IAI47_03040 at 628.290 kb on - strand, within IAI47_03040 at 628.405 kb on + strand, within IAI47_03040 at 628.405 kb on + strand, within IAI47_03040 at 628.406 kb on - strand, within IAI47_03040 at 628.406 kb on - strand, within IAI47_03040 at 628.406 kb on - strand, within IAI47_03040 at 628.431 kb on + strand, within IAI47_03040 at 628.431 kb on + strand, within IAI47_03040 at 628.432 kb on - strand, within IAI47_03040 at 628.432 kb on - strand, within IAI47_03040 at 628.432 kb on - strand, within IAI47_03040 at 628.573 kb on + strand at 628.573 kb on + strand at 628.574 kb on - strand at 628.574 kb on - strand at 628.582 kb on + strand at 628.582 kb on + strand at 628.583 kb on - strand at 628.583 kb on - strand at 628.615 kb on - strand at 628.626 kb on + strand at 628.626 kb on + strand at 628.627 kb on - strand at 628.695 kb on + strand, within IAI47_03045 at 628.731 kb on + strand, within IAI47_03045 at 628.731 kb on + strand, within IAI47_03045 at 628.731 kb on + strand, within IAI47_03045 at 628.731 kb on + strand, within IAI47_03045 at 628.732 kb on - strand, within IAI47_03045 at 628.732 kb on - strand, within IAI47_03045 at 628.732 kb on - strand, within IAI47_03045 at 628.732 kb on - strand, within IAI47_03045 at 628.820 kb on + strand, within IAI47_03045 at 628.820 kb on + strand, within IAI47_03045 at 628.820 kb on + strand, within IAI47_03045 at 628.820 kb on + strand, within IAI47_03045 at 628.821 kb on - strand, within IAI47_03045 at 628.821 kb on - strand, within IAI47_03045 at 628.821 kb on - strand, within IAI47_03045 at 628.906 kb on + strand, within IAI47_03045 at 628.907 kb on - strand, within IAI47_03045 at 628.907 kb on - strand, within IAI47_03045 at 628.994 kb on + strand, within IAI47_03045 at 628.994 kb on + strand, within IAI47_03045 at 628.994 kb on + strand, within IAI47_03045 at 628.994 kb on + strand, within IAI47_03045 at 628.994 kb on + strand, within IAI47_03045 at 628.994 kb on + strand, within IAI47_03045 at 628.995 kb on - strand, within IAI47_03045 at 628.995 kb on - strand, within IAI47_03045 at 628.995 kb on - strand, within IAI47_03045 at 628.995 kb on - strand, within IAI47_03045 at 628.995 kb on - strand, within IAI47_03045 at 628.998 kb on + strand, within IAI47_03045 at 628.998 kb on + strand, within IAI47_03045 at 628.998 kb on + strand, within IAI47_03045 at 628.998 kb on + strand, within IAI47_03045 at 628.998 kb on + strand, within IAI47_03045 at 628.998 kb on + strand, within IAI47_03045 at 628.998 kb on + strand, within IAI47_03045 at 628.999 kb on - strand, within IAI47_03045 at 628.999 kb on - strand, within IAI47_03045 at 628.999 kb on - strand, within IAI47_03045 at 628.999 kb on - strand, within IAI47_03045 at 628.999 kb on - strand, within IAI47_03045 at 628.999 kb on - strand, within IAI47_03045 at 628.999 kb on - strand, within IAI47_03045 at 628.999 kb on - strand, within IAI47_03045 at 628.999 kb on - strand, within IAI47_03045 at 628.999 kb on - strand, within IAI47_03045 at 628.999 kb on - strand, within IAI47_03045 at 629.077 kb on + strand at 629.077 kb on + strand at 629.077 kb on + strand at 629.194 kb on + strand at 629.194 kb on + strand at 629.195 kb on - strand at 629.195 kb on - strand at 629.195 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 627,634 + IAI47_03035 0.69 -2.8 627,646 + IAI47_03035 0.70 +1.4 627,646 + IAI47_03035 0.70 +0.6 627,646 + IAI47_03035 0.70 -0.4 627,647 - IAI47_03035 0.70 -0.1 627,692 + IAI47_03035 0.76 +0.4 627,692 + IAI47_03035 0.76 +1.8 627,692 + IAI47_03035 0.76 +0.2 627,692 + IAI47_03035 0.76 -0.5 627,693 - IAI47_03035 0.76 +0.5 627,693 - IAI47_03035 0.76 +1.1 627,693 - IAI47_03035 0.76 -3.3 627,795 + IAI47_03035 0.89 +1.4 627,796 - IAI47_03035 0.89 -1.2 627,796 - IAI47_03035 0.89 -2.5 627,796 - IAI47_03035 0.89 -2.0 627,822 + -0.5 627,822 + -0.2 627,822 + +1.3 627,822 + +2.8 627,823 - -0.2 627,823 - +0.7 627,823 - +1.2 627,857 + -0.2 627,857 + +0.7 627,857 + -0.8 627,858 - +0.0 627,858 - +0.7 627,858 - -2.0 627,955 + -1.0 627,969 + +0.2 627,969 + +0.7 627,969 + +0.5 627,970 - +0.3 627,970 - -1.2 627,973 + -1.5 627,974 - +0.3 627,976 + -0.5 627,976 + -0.8 627,976 + +1.4 627,976 + +3.2 627,976 + +4.2 627,976 + -1.4 627,976 + +0.5 627,977 - +0.0 627,977 - +1.9 627,977 - +1.0 627,978 + -1.5 627,978 + -1.1 627,978 + -0.5 627,978 + +3.6 627,978 + -1.8 627,979 - -1.6 627,979 - -0.2 627,979 - +1.0 627,979 - -0.8 627,979 - -2.3 627,979 - -0.5 627,981 + +0.4 627,981 + +0.8 627,981 + -2.3 627,982 - -0.6 627,982 - -0.1 627,982 - -2.3 628,000 + -2.0 628,001 - -0.8 628,001 - -2.3 628,057 + -1.8 628,057 + +0.1 628,057 + -0.3 628,058 - +1.8 628,157 + IAI47_03040 0.24 -2.6 628,157 + IAI47_03040 0.24 -1.1 628,157 + IAI47_03040 0.24 -1.0 628,157 + IAI47_03040 0.24 -1.1 628,157 + IAI47_03040 0.24 -1.3 628,157 + IAI47_03040 0.24 +1.2 628,157 + IAI47_03040 0.24 +0.5 628,157 + IAI47_03040 0.24 +0.2 628,158 - IAI47_03040 0.24 +0.8 628,158 - IAI47_03040 0.24 +0.0 628,158 - IAI47_03040 0.24 -1.6 628,158 - IAI47_03040 0.24 -1.5 628,207 + IAI47_03040 0.32 +0.9 628,207 + IAI47_03040 0.32 -1.3 628,207 + IAI47_03040 0.32 +0.7 628,207 + IAI47_03040 0.32 +0.5 628,207 + IAI47_03040 0.32 +0.9 628,207 + IAI47_03040 0.32 -0.7 628,207 + IAI47_03040 0.32 +0.0 628,208 - IAI47_03040 0.32 +0.7 628,208 - IAI47_03040 0.32 +0.5 628,208 - IAI47_03040 0.32 -1.4 628,226 - IAI47_03040 0.35 -1.5 628,240 + IAI47_03040 0.38 +1.1 628,240 + IAI47_03040 0.38 -2.6 628,241 - IAI47_03040 0.38 -0.8 628,241 - IAI47_03040 0.38 +1.4 628,285 + IAI47_03040 0.45 -2.3 628,285 + IAI47_03040 0.45 -1.6 628,285 + IAI47_03040 0.45 +3.4 628,285 + IAI47_03040 0.45 -2.4 628,285 + IAI47_03040 0.45 +0.0 628,285 + IAI47_03040 0.45 +1.9 628,286 - IAI47_03040 0.46 -2.3 628,286 - IAI47_03040 0.46 -2.4 628,286 - IAI47_03040 0.46 -1.9 628,286 - IAI47_03040 0.46 +0.1 628,289 + IAI47_03040 0.46 -0.8 628,289 + IAI47_03040 0.46 +2.5 628,290 - IAI47_03040 0.46 -0.0 628,290 - IAI47_03040 0.46 -0.2 628,290 - IAI47_03040 0.46 +0.1 628,290 - IAI47_03040 0.46 +1.4 628,290 - IAI47_03040 0.46 -0.2 628,290 - IAI47_03040 0.46 -1.9 628,290 - IAI47_03040 0.46 -0.5 628,290 - IAI47_03040 0.46 +0.8 628,405 + IAI47_03040 0.66 +0.9 628,405 + IAI47_03040 0.66 +5.2 628,406 - IAI47_03040 0.66 +0.7 628,406 - IAI47_03040 0.66 -0.8 628,406 - IAI47_03040 0.66 +0.0 628,431 + IAI47_03040 0.70 -0.2 628,431 + IAI47_03040 0.70 -0.9 628,432 - IAI47_03040 0.71 -0.6 628,432 - IAI47_03040 0.71 -0.6 628,432 - IAI47_03040 0.71 +0.7 628,573 + +1.8 628,573 + -1.2 628,574 - -0.7 628,574 - +0.3 628,582 + -0.7 628,582 + -0.2 628,583 - -0.1 628,583 - +1.8 628,615 - +0.5 628,626 + -2.3 628,626 + +0.5 628,627 - -1.5 628,695 + IAI47_03045 0.18 +1.4 628,731 + IAI47_03045 0.25 +1.6 628,731 + IAI47_03045 0.25 -1.3 628,731 + IAI47_03045 0.25 -1.1 628,731 + IAI47_03045 0.25 +0.3 628,732 - IAI47_03045 0.25 +1.0 628,732 - IAI47_03045 0.25 -1.5 628,732 - IAI47_03045 0.25 -0.0 628,732 - IAI47_03045 0.25 +1.4 628,820 + IAI47_03045 0.42 +0.5 628,820 + IAI47_03045 0.42 -0.8 628,820 + IAI47_03045 0.42 -0.3 628,820 + IAI47_03045 0.42 -2.1 628,821 - IAI47_03045 0.43 -1.6 628,821 - IAI47_03045 0.43 +2.0 628,821 - IAI47_03045 0.43 +0.8 628,906 + IAI47_03045 0.59 +1.1 628,907 - IAI47_03045 0.59 -2.2 628,907 - IAI47_03045 0.59 -1.8 628,994 + IAI47_03045 0.76 +0.7 628,994 + IAI47_03045 0.76 -0.2 628,994 + IAI47_03045 0.76 -0.9 628,994 + IAI47_03045 0.76 +0.6 628,994 + IAI47_03045 0.76 -2.1 628,994 + IAI47_03045 0.76 -0.3 628,995 - IAI47_03045 0.76 +0.6 628,995 - IAI47_03045 0.76 -1.1 628,995 - IAI47_03045 0.76 +0.9 628,995 - IAI47_03045 0.76 -3.7 628,995 - IAI47_03045 0.76 -2.7 628,998 + IAI47_03045 0.77 +1.5 628,998 + IAI47_03045 0.77 +1.5 628,998 + IAI47_03045 0.77 +2.0 628,998 + IAI47_03045 0.77 -3.3 628,998 + IAI47_03045 0.77 +0.3 628,998 + IAI47_03045 0.77 +0.5 628,998 + IAI47_03045 0.77 +2.0 628,999 - IAI47_03045 0.77 +0.8 628,999 - IAI47_03045 0.77 +0.8 628,999 - IAI47_03045 0.77 -0.2 628,999 - IAI47_03045 0.77 -1.3 628,999 - IAI47_03045 0.77 +2.2 628,999 - IAI47_03045 0.77 -0.7 628,999 - IAI47_03045 0.77 -0.9 628,999 - IAI47_03045 0.77 -0.1 628,999 - IAI47_03045 0.77 -2.5 628,999 - IAI47_03045 0.77 +1.0 628,999 - IAI47_03045 0.77 +2.3 629,077 + +0.2 629,077 + +2.3 629,077 + +1.2 629,194 + +1.3 629,194 + -0.4 629,195 - -0.9 629,195 - +1.0 629,195 - +0.7
Or see this region's nucleotide sequence