Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3485

Experiment: LB 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_3482 and Ga0059261_3483 overlap by 4 nucleotidesGa0059261_3483 and Ga0059261_3484 are separated by 28 nucleotidesGa0059261_3484 and Ga0059261_3485 are separated by 47 nucleotidesGa0059261_3485 and Ga0059261_3486 overlap by 4 nucleotidesGa0059261_3486 and Ga0059261_3487 are separated by 15 nucleotides Ga0059261_3482: Ga0059261_3482 - condensin subunit ScpA, at 3,609,338 to 3,610,072 _3482 Ga0059261_3483: Ga0059261_3483 - segregation and condensation protein B, at 3,610,069 to 3,610,662 _3483 Ga0059261_3484: Ga0059261_3484 - twin arginine-targeting protein translocase, TatA/E family, at 3,610,691 to 3,610,939 _3484 Ga0059261_3485: Ga0059261_3485 - twin arginine-targeting protein translocase TatB, at 3,610,987 to 3,611,421 _3485 Ga0059261_3486: Ga0059261_3486 - Twin arginine targeting (Tat) protein translocase TatC, at 3,611,418 to 3,612,209 _3486 Ga0059261_3487: Ga0059261_3487 - Entericidin EcnA/B family, at 3,612,225 to 3,612,353 _3487 Position (kb) 3610 3611 3612Strain fitness (log2 ratio) -2 -1 0 1 2at 3610.049 kb on + strandat 3610.049 kb on + strandat 3610.049 kb on + strandat 3610.050 kb on - strandat 3610.050 kb on - strandat 3610.050 kb on - strandat 3610.050 kb on - strandat 3610.147 kb on - strand, within Ga0059261_3483at 3610.156 kb on + strand, within Ga0059261_3483at 3610.157 kb on - strand, within Ga0059261_3483at 3610.157 kb on - strand, within Ga0059261_3483at 3610.157 kb on - strand, within Ga0059261_3483at 3610.157 kb on - strand, within Ga0059261_3483at 3610.157 kb on - strand, within Ga0059261_3483at 3610.157 kb on - strand, within Ga0059261_3483at 3610.210 kb on + strand, within Ga0059261_3483at 3610.210 kb on + strand, within Ga0059261_3483at 3610.211 kb on - strand, within Ga0059261_3483at 3610.357 kb on + strand, within Ga0059261_3483at 3610.358 kb on - strand, within Ga0059261_3483at 3610.358 kb on - strand, within Ga0059261_3483at 3610.640 kb on + strandat 3612.207 kb on + strandat 3612.208 kb on - strandat 3612.208 kb on - strandat 3612.226 kb on + strandat 3612.226 kb on + strandat 3612.226 kb on + strandat 3612.226 kb on + strandat 3612.227 kb on - strandat 3612.227 kb on - strandat 3612.347 kb on + strandat 3612.347 kb on + strandat 3612.347 kb on + strandat 3612.348 kb on - strandat 3612.348 kb on - strandat 3612.348 kb on - strandat 3612.348 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
remove
3,610,049 + -0.9
3,610,049 + -0.7
3,610,049 + -0.8
3,610,050 - +0.0
3,610,050 - +0.5
3,610,050 - -0.1
3,610,050 - +0.4
3,610,147 - Ga0059261_3483 0.13 -0.7
3,610,156 + Ga0059261_3483 0.15 -1.3
3,610,157 - Ga0059261_3483 0.15 -1.5
3,610,157 - Ga0059261_3483 0.15 -1.7
3,610,157 - Ga0059261_3483 0.15 -0.4
3,610,157 - Ga0059261_3483 0.15 -0.1
3,610,157 - Ga0059261_3483 0.15 -1.0
3,610,157 - Ga0059261_3483 0.15 +0.0
3,610,210 + Ga0059261_3483 0.24 -0.3
3,610,210 + Ga0059261_3483 0.24 -0.9
3,610,211 - Ga0059261_3483 0.24 -1.0
3,610,357 + Ga0059261_3483 0.48 -0.1
3,610,358 - Ga0059261_3483 0.49 -0.6
3,610,358 - Ga0059261_3483 0.49 +0.4
3,610,640 + -2.2
3,612,207 + -0.0
3,612,208 - +0.5
3,612,208 - +1.7
3,612,226 + +0.4
3,612,226 + +0.9
3,612,226 + +0.2
3,612,226 + -0.5
3,612,227 - +0.2
3,612,227 - -0.5
3,612,347 + -0.1
3,612,347 + -0.0
3,612,347 + +2.7
3,612,348 - -0.5
3,612,348 - +0.9
3,612,348 - +1.5
3,612,348 - +0.3

Or see this region's nucleotide sequence