Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3177 and Ga0059261_3178 are separated by 47 nucleotides Ga0059261_3178 and Ga0059261_3179 are separated by 59 nucleotides Ga0059261_3179 and Ga0059261_3180 overlap by 8 nucleotides Ga0059261_3180 and Ga0059261_3181 are separated by 74 nucleotides
Ga0059261_3177: Ga0059261_3177 - ATP synthase F0 subcomplex A subunit, at 3,311,302 to 3,312,060
_3177
Ga0059261_3178: Ga0059261_3178 - ATP synthase subunit C, at 3,312,108 to 3,312,335
_3178
Ga0059261_3179: Ga0059261_3179 - F0F1-type ATP synthase, subunit b, at 3,312,395 to 3,312,889
_3179
Ga0059261_3180: Ga0059261_3180 - F0F1-type ATP synthase, subunit b, at 3,312,882 to 3,313,502
_3180
Ga0059261_3181: Ga0059261_3181 - Signal transduction histidine kinase, at 3,313,577 to 3,315,433
_3181
Position (kb)
3312
3313 Strain fitness (log2 ratio)
-1
0
1 at 3313.500 kb on + strand at 3313.500 kb on + strand at 3313.500 kb on + strand at 3313.501 kb on - strand at 3313.501 kb on - strand at 3313.501 kb on - strand at 3313.501 kb on - strand at 3313.779 kb on - strand, within Ga0059261_3181 at 3313.814 kb on + strand, within Ga0059261_3181 at 3313.814 kb on + strand, within Ga0059261_3181 at 3313.814 kb on + strand, within Ga0059261_3181 at 3313.814 kb on + strand, within Ga0059261_3181 at 3313.815 kb on - strand, within Ga0059261_3181 at 3313.815 kb on - strand, within Ga0059261_3181
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 3,313,500 + +0.1 3,313,500 + +0.3 3,313,500 + +0.5 3,313,501 - -0.6 3,313,501 - +0.2 3,313,501 - +1.1 3,313,501 - -0.2 3,313,779 - Ga0059261_3181 0.11 +0.7 3,313,814 + Ga0059261_3181 0.13 +0.4 3,313,814 + Ga0059261_3181 0.13 +0.4 3,313,814 + Ga0059261_3181 0.13 +0.5 3,313,814 + Ga0059261_3181 0.13 -1.2 3,313,815 - Ga0059261_3181 0.13 +1.4 3,313,815 - Ga0059261_3181 0.13 -0.1
Or see this region's nucleotide sequence