Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3179

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3177 and Ga0059261_3178 are separated by 47 nucleotidesGa0059261_3178 and Ga0059261_3179 are separated by 59 nucleotidesGa0059261_3179 and Ga0059261_3180 overlap by 8 nucleotidesGa0059261_3180 and Ga0059261_3181 are separated by 74 nucleotides Ga0059261_3177: Ga0059261_3177 - ATP synthase F0 subcomplex A subunit, at 3,311,302 to 3,312,060 _3177 Ga0059261_3178: Ga0059261_3178 - ATP synthase subunit C, at 3,312,108 to 3,312,335 _3178 Ga0059261_3179: Ga0059261_3179 - F0F1-type ATP synthase, subunit b, at 3,312,395 to 3,312,889 _3179 Ga0059261_3180: Ga0059261_3180 - F0F1-type ATP synthase, subunit b, at 3,312,882 to 3,313,502 _3180 Ga0059261_3181: Ga0059261_3181 - Signal transduction histidine kinase, at 3,313,577 to 3,315,433 _3181 Position (kb) 3312 3313Strain fitness (log2 ratio) -1 0 1at 3313.500 kb on + strandat 3313.500 kb on + strandat 3313.500 kb on + strandat 3313.501 kb on - strandat 3313.501 kb on - strandat 3313.501 kb on - strandat 3313.501 kb on - strandat 3313.779 kb on - strand, within Ga0059261_3181at 3313.814 kb on + strand, within Ga0059261_3181at 3313.814 kb on + strand, within Ga0059261_3181at 3313.814 kb on + strand, within Ga0059261_3181at 3313.814 kb on + strand, within Ga0059261_3181at 3313.815 kb on - strand, within Ga0059261_3181at 3313.815 kb on - strand, within Ga0059261_3181

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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3,313,500 + +0.1
3,313,500 + +0.3
3,313,500 + +0.5
3,313,501 - -0.6
3,313,501 - +0.2
3,313,501 - +1.1
3,313,501 - -0.2
3,313,779 - Ga0059261_3181 0.11 +0.7
3,313,814 + Ga0059261_3181 0.13 +0.4
3,313,814 + Ga0059261_3181 0.13 +0.4
3,313,814 + Ga0059261_3181 0.13 +0.5
3,313,814 + Ga0059261_3181 0.13 -1.2
3,313,815 - Ga0059261_3181 0.13 +1.4
3,313,815 - Ga0059261_3181 0.13 -0.1

Or see this region's nucleotide sequence