Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19340 and CSW01_19345 overlap by 4 nucleotides CSW01_19345 and CSW01_19350 are separated by 75 nucleotides CSW01_19350 and CSW01_19355 are separated by 181 nucleotides
CSW01_19340: CSW01_19340 - glycerol kinase, at 999,059 to 999,982
_19340
CSW01_19345: CSW01_19345 - YccF domain-containing protein, at 999,979 to 1,000,410
_19345
CSW01_19350: CSW01_19350 - sulfite exporter TauE/SafE family protein, at 1,000,486 to 1,001,208
_19350
CSW01_19355: CSW01_19355 - rhodanese-like domain-containing protein, at 1,001,390 to 1,001,785
_19355
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 999.012 kb on + strand at 999.012 kb on + strand at 999.020 kb on - strand at 999.034 kb on + strand at 999.040 kb on - strand at 999.045 kb on + strand at 999.136 kb on - strand at 999.173 kb on - strand, within CSW01_19340 at 999.213 kb on + strand, within CSW01_19340 at 999.349 kb on + strand, within CSW01_19340 at 999.434 kb on - strand, within CSW01_19340 at 999.434 kb on - strand, within CSW01_19340 at 999.436 kb on + strand, within CSW01_19340 at 999.442 kb on + strand, within CSW01_19340 at 999.446 kb on + strand, within CSW01_19340 at 999.488 kb on - strand, within CSW01_19340 at 999.488 kb on - strand, within CSW01_19340 at 999.517 kb on - strand, within CSW01_19340 at 999.703 kb on - strand, within CSW01_19340 at 999.738 kb on - strand, within CSW01_19340 at 999.743 kb on - strand, within CSW01_19340 at 999.775 kb on - strand, within CSW01_19340 at 999.837 kb on + strand, within CSW01_19340 at 999.888 kb on + strand, within CSW01_19340 at 999.888 kb on + strand, within CSW01_19340 at 999.888 kb on + strand, within CSW01_19340 at 999.888 kb on + strand, within CSW01_19340 at 999.896 kb on - strand at 999.896 kb on - strand at 999.939 kb on - strand at 999.984 kb on - strand at 999.984 kb on - strand at 999.984 kb on - strand at 1000.054 kb on - strand, within CSW01_19345 at 1000.070 kb on - strand, within CSW01_19345 at 1000.114 kb on - strand, within CSW01_19345 at 1000.332 kb on - strand, within CSW01_19345 at 1000.354 kb on + strand, within CSW01_19345 at 1000.416 kb on - strand at 1000.588 kb on + strand, within CSW01_19350 at 1000.588 kb on + strand, within CSW01_19350 at 1000.596 kb on - strand, within CSW01_19350 at 1000.596 kb on - strand, within CSW01_19350 at 1000.596 kb on - strand, within CSW01_19350 at 1000.601 kb on - strand, within CSW01_19350 at 1000.611 kb on + strand, within CSW01_19350 at 1000.639 kb on - strand, within CSW01_19350 at 1000.896 kb on + strand, within CSW01_19350 at 1000.911 kb on - strand, within CSW01_19350 at 1000.936 kb on - strand, within CSW01_19350 at 1000.947 kb on - strand, within CSW01_19350 at 1001.039 kb on + strand, within CSW01_19350 at 1001.060 kb on - strand, within CSW01_19350 at 1001.153 kb on - strand at 1001.215 kb on + strand at 1001.223 kb on - strand at 1001.223 kb on - strand at 1001.223 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A remove 999,012 + +0.5 999,012 + +0.3 999,020 - +0.3 999,034 + +0.8 999,040 - +0.2 999,045 + -0.3 999,136 - +0.3 999,173 - CSW01_19340 0.12 +0.1 999,213 + CSW01_19340 0.17 -0.8 999,349 + CSW01_19340 0.31 -0.0 999,434 - CSW01_19340 0.41 +0.5 999,434 - CSW01_19340 0.41 +0.0 999,436 + CSW01_19340 0.41 -0.2 999,442 + CSW01_19340 0.41 +0.1 999,446 + CSW01_19340 0.42 +0.8 999,488 - CSW01_19340 0.46 +1.4 999,488 - CSW01_19340 0.46 +1.0 999,517 - CSW01_19340 0.50 +0.8 999,703 - CSW01_19340 0.70 +0.1 999,738 - CSW01_19340 0.73 -0.4 999,743 - CSW01_19340 0.74 -0.0 999,775 - CSW01_19340 0.77 +1.3 999,837 + CSW01_19340 0.84 +0.1 999,888 + CSW01_19340 0.90 +0.4 999,888 + CSW01_19340 0.90 +0.5 999,888 + CSW01_19340 0.90 +1.7 999,888 + CSW01_19340 0.90 -0.1 999,896 - -0.5 999,896 - -0.4 999,939 - +0.6 999,984 - +0.5 999,984 - -0.3 999,984 - -0.2 1,000,054 - CSW01_19345 0.17 -0.8 1,000,070 - CSW01_19345 0.21 -0.5 1,000,114 - CSW01_19345 0.31 -0.6 1,000,332 - CSW01_19345 0.82 -0.3 1,000,354 + CSW01_19345 0.87 +0.1 1,000,416 - -0.0 1,000,588 + CSW01_19350 0.14 -1.3 1,000,588 + CSW01_19350 0.14 +0.6 1,000,596 - CSW01_19350 0.15 +0.6 1,000,596 - CSW01_19350 0.15 +1.0 1,000,596 - CSW01_19350 0.15 -0.2 1,000,601 - CSW01_19350 0.16 -0.1 1,000,611 + CSW01_19350 0.17 -0.8 1,000,639 - CSW01_19350 0.21 -0.8 1,000,896 + CSW01_19350 0.57 -0.5 1,000,911 - CSW01_19350 0.59 -0.2 1,000,936 - CSW01_19350 0.62 -0.7 1,000,947 - CSW01_19350 0.64 -3.1 1,001,039 + CSW01_19350 0.76 +0.7 1,001,060 - CSW01_19350 0.79 -0.1 1,001,153 - +0.6 1,001,215 + +1.3 1,001,223 - +1.5 1,001,223 - +0.3 1,001,223 - -0.2
Or see this region's nucleotide sequence