Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18040

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18035 and CSW01_18040 are separated by 227 nucleotidesCSW01_18040 and CSW01_18045 are separated by 85 nucleotides CSW01_18035: CSW01_18035 - tyrosine transporter TyrP, at 712,039 to 713,241 _18035 CSW01_18040: CSW01_18040 - methyl-accepting chemotaxis protein, at 713,469 to 714,890 _18040 CSW01_18045: CSW01_18045 - UDP-glucose 4-epimerase GalE, at 714,976 to 715,992 _18045 Position (kb) 713 714 715Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 712.471 kb on - strand, within CSW01_18035at 712.500 kb on + strand, within CSW01_18035at 712.551 kb on + strand, within CSW01_18035at 712.559 kb on - strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.681 kb on - strand, within CSW01_18035at 712.681 kb on - strand, within CSW01_18035at 712.748 kb on + strand, within CSW01_18035at 712.748 kb on + strand, within CSW01_18035at 712.781 kb on + strand, within CSW01_18035at 712.812 kb on + strand, within CSW01_18035at 712.831 kb on - strand, within CSW01_18035at 712.873 kb on + strand, within CSW01_18035at 712.909 kb on - strand, within CSW01_18035at 713.018 kb on - strand, within CSW01_18035at 713.048 kb on - strand, within CSW01_18035at 713.130 kb on - strandat 713.136 kb on + strandat 713.178 kb on - strandat 713.208 kb on + strandat 713.252 kb on + strandat 713.254 kb on + strandat 713.260 kb on - strandat 713.455 kb on + strandat 713.599 kb on + strandat 713.607 kb on - strandat 713.609 kb on - strandat 713.621 kb on + strand, within CSW01_18040at 713.674 kb on - strand, within CSW01_18040at 713.771 kb on + strand, within CSW01_18040at 713.774 kb on - strand, within CSW01_18040at 713.779 kb on - strand, within CSW01_18040at 713.780 kb on - strand, within CSW01_18040at 713.829 kb on - strand, within CSW01_18040at 714.020 kb on + strand, within CSW01_18040at 714.063 kb on + strand, within CSW01_18040at 714.071 kb on - strand, within CSW01_18040at 714.073 kb on + strand, within CSW01_18040at 714.073 kb on + strand, within CSW01_18040at 714.079 kb on + strand, within CSW01_18040at 714.251 kb on - strand, within CSW01_18040at 714.301 kb on + strand, within CSW01_18040at 714.374 kb on + strand, within CSW01_18040at 714.382 kb on - strand, within CSW01_18040at 714.479 kb on - strand, within CSW01_18040at 714.618 kb on + strand, within CSW01_18040at 714.621 kb on - strand, within CSW01_18040at 714.621 kb on - strand, within CSW01_18040at 714.650 kb on + strand, within CSW01_18040at 714.650 kb on + strand, within CSW01_18040at 714.658 kb on - strand, within CSW01_18040at 714.660 kb on + strand, within CSW01_18040at 714.660 kb on + strand, within CSW01_18040at 714.660 kb on + strand, within CSW01_18040at 714.668 kb on - strand, within CSW01_18040at 714.668 kb on - strand, within CSW01_18040at 714.668 kb on - strand, within CSW01_18040at 714.668 kb on - strand, within CSW01_18040at 714.668 kb on - strand, within CSW01_18040at 714.785 kb on + strandat 714.785 kb on + strandat 714.793 kb on - strandat 714.793 kb on - strandat 714.826 kb on + strandat 715.039 kb on + strandat 715.191 kb on - strand, within CSW01_18045at 715.201 kb on - strand, within CSW01_18045at 715.308 kb on + strand, within CSW01_18045at 715.308 kb on + strand, within CSW01_18045at 715.316 kb on - strand, within CSW01_18045at 715.316 kb on - strand, within CSW01_18045at 715.458 kb on + strand, within CSW01_18045at 715.466 kb on - strand, within CSW01_18045at 715.484 kb on - strand, within CSW01_18045at 715.522 kb on - strand, within CSW01_18045at 715.739 kb on + strand, within CSW01_18045at 715.739 kb on + strand, within CSW01_18045at 715.747 kb on - strand, within CSW01_18045at 715.772 kb on + strand, within CSW01_18045at 715.780 kb on - strand, within CSW01_18045at 715.830 kb on - strand, within CSW01_18045at 715.840 kb on - strand, within CSW01_18045

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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712,471 - CSW01_18035 0.36 +0.3
712,500 + CSW01_18035 0.38 +1.2
712,551 + CSW01_18035 0.43 -0.4
712,559 - CSW01_18035 0.43 -1.0
712,673 + CSW01_18035 0.53 -1.5
712,673 + CSW01_18035 0.53 -0.9
712,673 + CSW01_18035 0.53 -0.4
712,673 + CSW01_18035 0.53 -0.1
712,673 + CSW01_18035 0.53 +0.4
712,681 - CSW01_18035 0.53 -0.0
712,681 - CSW01_18035 0.53 -0.1
712,748 + CSW01_18035 0.59 +0.2
712,748 + CSW01_18035 0.59 -0.2
712,781 + CSW01_18035 0.62 -0.1
712,812 + CSW01_18035 0.64 -0.6
712,831 - CSW01_18035 0.66 +2.1
712,873 + CSW01_18035 0.69 +0.4
712,909 - CSW01_18035 0.72 -3.1
713,018 - CSW01_18035 0.81 +0.4
713,048 - CSW01_18035 0.84 -0.4
713,130 - +1.1
713,136 + +0.1
713,178 - +0.1
713,208 + +0.0
713,252 + +0.0
713,254 + +0.7
713,260 - -0.5
713,455 + -0.1
713,599 + -0.2
713,607 - -1.3
713,609 - +0.5
713,621 + CSW01_18040 0.11 +0.5
713,674 - CSW01_18040 0.14 -0.1
713,771 + CSW01_18040 0.21 +0.4
713,774 - CSW01_18040 0.21 -0.0
713,779 - CSW01_18040 0.22 -0.1
713,780 - CSW01_18040 0.22 -0.4
713,829 - CSW01_18040 0.25 +0.8
714,020 + CSW01_18040 0.39 -0.4
714,063 + CSW01_18040 0.42 -0.7
714,071 - CSW01_18040 0.42 -1.5
714,073 + CSW01_18040 0.42 -0.6
714,073 + CSW01_18040 0.42 +0.9
714,079 + CSW01_18040 0.43 +0.0
714,251 - CSW01_18040 0.55 -1.1
714,301 + CSW01_18040 0.59 -0.1
714,374 + CSW01_18040 0.64 +0.3
714,382 - CSW01_18040 0.64 -2.1
714,479 - CSW01_18040 0.71 -0.9
714,618 + CSW01_18040 0.81 -0.6
714,621 - CSW01_18040 0.81 +0.8
714,621 - CSW01_18040 0.81 -0.9
714,650 + CSW01_18040 0.83 -1.5
714,650 + CSW01_18040 0.83 +0.4
714,658 - CSW01_18040 0.84 +0.5
714,660 + CSW01_18040 0.84 -0.6
714,660 + CSW01_18040 0.84 -0.3
714,660 + CSW01_18040 0.84 +1.6
714,668 - CSW01_18040 0.84 -0.7
714,668 - CSW01_18040 0.84 -0.8
714,668 - CSW01_18040 0.84 -0.9
714,668 - CSW01_18040 0.84 -0.1
714,668 - CSW01_18040 0.84 -0.7
714,785 + -0.1
714,785 + -1.1
714,793 - +0.4
714,793 - +0.5
714,826 + -0.1
715,039 + -0.7
715,191 - CSW01_18045 0.21 -0.1
715,201 - CSW01_18045 0.22 -0.2
715,308 + CSW01_18045 0.33 +0.4
715,308 + CSW01_18045 0.33 -1.1
715,316 - CSW01_18045 0.33 +0.1
715,316 - CSW01_18045 0.33 -0.7
715,458 + CSW01_18045 0.47 -2.9
715,466 - CSW01_18045 0.48 +0.5
715,484 - CSW01_18045 0.50 -0.7
715,522 - CSW01_18045 0.54 +0.8
715,739 + CSW01_18045 0.75 +0.5
715,739 + CSW01_18045 0.75 +0.4
715,747 - CSW01_18045 0.76 +0.1
715,772 + CSW01_18045 0.78 -0.5
715,780 - CSW01_18045 0.79 -0.4
715,830 - CSW01_18045 0.84 -0.0
715,840 - CSW01_18045 0.85 -0.1

Or see this region's nucleotide sequence