Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17960

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17950 and CSW01_17955 are separated by 217 nucleotidesCSW01_17955 and CSW01_17960 are separated by 174 nucleotidesCSW01_17960 and CSW01_17965 are separated by 52 nucleotidesCSW01_17965 and CSW01_17970 overlap by 4 nucleotides CSW01_17950: CSW01_17950 - tRNA-Leu, at 697,844 to 697,930 _17950 CSW01_17955: CSW01_17955 - lactoylglutathione lyase family protein, at 698,148 to 698,648 _17955 CSW01_17960: CSW01_17960 - LysR family transcriptional regulator, at 698,823 to 699,728 _17960 CSW01_17965: CSW01_17965 - arginine transporter permease subunit ArtM, at 699,781 to 700,449 _17965 CSW01_17970: CSW01_17970 - ABC transporter, at 700,446 to 701,135 _17970 Position (kb) 698 699 700Strain fitness (log2 ratio) -2 -1 0 1 2at 697.828 kb on + strandat 697.832 kb on + strandat 697.851 kb on - strandat 697.968 kb on - strandat 698.114 kb on - strandat 698.167 kb on + strandat 698.175 kb on - strandat 698.175 kb on - strandat 698.185 kb on - strandat 698.278 kb on + strand, within CSW01_17955at 698.489 kb on + strand, within CSW01_17955at 698.502 kb on - strand, within CSW01_17955at 698.524 kb on + strand, within CSW01_17955at 698.524 kb on + strand, within CSW01_17955at 698.567 kb on - strand, within CSW01_17955at 698.580 kb on - strand, within CSW01_17955at 698.580 kb on - strand, within CSW01_17955at 698.636 kb on + strandat 698.644 kb on - strandat 698.678 kb on + strandat 698.697 kb on + strandat 698.705 kb on - strandat 698.720 kb on - strandat 698.720 kb on - strandat 698.768 kb on - strandat 698.839 kb on + strandat 698.869 kb on - strandat 699.084 kb on - strand, within CSW01_17960at 699.100 kb on + strand, within CSW01_17960at 699.112 kb on + strand, within CSW01_17960at 699.120 kb on - strand, within CSW01_17960at 699.169 kb on + strand, within CSW01_17960at 699.169 kb on + strand, within CSW01_17960at 699.169 kb on + strand, within CSW01_17960at 699.170 kb on + strand, within CSW01_17960at 699.177 kb on - strand, within CSW01_17960at 699.177 kb on - strand, within CSW01_17960at 699.177 kb on - strand, within CSW01_17960at 699.184 kb on - strand, within CSW01_17960at 699.259 kb on + strand, within CSW01_17960at 699.302 kb on - strand, within CSW01_17960at 699.324 kb on - strand, within CSW01_17960at 699.324 kb on - strand, within CSW01_17960at 699.376 kb on + strand, within CSW01_17960at 699.395 kb on + strand, within CSW01_17960at 699.403 kb on - strand, within CSW01_17960at 699.464 kb on - strand, within CSW01_17960at 699.464 kb on - strand, within CSW01_17960at 699.531 kb on + strand, within CSW01_17960at 699.531 kb on + strand, within CSW01_17960at 699.532 kb on + strand, within CSW01_17960at 699.539 kb on - strand, within CSW01_17960at 699.540 kb on - strand, within CSW01_17960at 699.559 kb on - strand, within CSW01_17960at 699.640 kb on - strandat 699.705 kb on + strandat 699.768 kb on - strandat 699.779 kb on + strandat 699.882 kb on - strand, within CSW01_17965at 699.963 kb on - strand, within CSW01_17965at 699.963 kb on - strand, within CSW01_17965at 699.963 kb on - strand, within CSW01_17965at 699.968 kb on - strand, within CSW01_17965at 700.005 kb on + strand, within CSW01_17965at 700.022 kb on + strand, within CSW01_17965at 700.035 kb on - strand, within CSW01_17965at 700.115 kb on + strand, within CSW01_17965at 700.123 kb on - strand, within CSW01_17965at 700.148 kb on - strand, within CSW01_17965at 700.220 kb on + strand, within CSW01_17965at 700.228 kb on - strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.288 kb on + strand, within CSW01_17965at 700.296 kb on - strand, within CSW01_17965at 700.301 kb on + strand, within CSW01_17965at 700.302 kb on + strand, within CSW01_17965at 700.332 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.348 kb on + strand, within CSW01_17965at 700.354 kb on - strand, within CSW01_17965at 700.403 kb on - strandat 700.455 kb on + strandat 700.553 kb on - strand, within CSW01_17970at 700.575 kb on + strand, within CSW01_17970at 700.597 kb on - strand, within CSW01_17970at 700.602 kb on - strand, within CSW01_17970at 700.686 kb on + strand, within CSW01_17970at 700.694 kb on + strand, within CSW01_17970at 700.708 kb on + strand, within CSW01_17970at 700.713 kb on + strand, within CSW01_17970

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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697,828 + -0.7
697,832 + -0.9
697,851 - +0.6
697,968 - -0.0
698,114 - +1.2
698,167 + +2.6
698,175 - +0.4
698,175 - -0.9
698,185 - -0.8
698,278 + CSW01_17955 0.26 +0.6
698,489 + CSW01_17955 0.68 +0.7
698,502 - CSW01_17955 0.71 +0.2
698,524 + CSW01_17955 0.75 +0.5
698,524 + CSW01_17955 0.75 -0.2
698,567 - CSW01_17955 0.84 -0.4
698,580 - CSW01_17955 0.86 +0.6
698,580 - CSW01_17955 0.86 -0.7
698,636 + +0.7
698,644 - +0.6
698,678 + +1.5
698,697 + -0.8
698,705 - -1.0
698,720 - +0.3
698,720 - +0.3
698,768 - -0.8
698,839 + +0.7
698,869 - -0.6
699,084 - CSW01_17960 0.29 -0.8
699,100 + CSW01_17960 0.31 -0.0
699,112 + CSW01_17960 0.32 +0.5
699,120 - CSW01_17960 0.33 +0.4
699,169 + CSW01_17960 0.38 +0.5
699,169 + CSW01_17960 0.38 +1.0
699,169 + CSW01_17960 0.38 +0.2
699,170 + CSW01_17960 0.38 -0.1
699,177 - CSW01_17960 0.39 -0.1
699,177 - CSW01_17960 0.39 +0.2
699,177 - CSW01_17960 0.39 +1.3
699,184 - CSW01_17960 0.40 -0.2
699,259 + CSW01_17960 0.48 +1.2
699,302 - CSW01_17960 0.53 -0.1
699,324 - CSW01_17960 0.55 -0.2
699,324 - CSW01_17960 0.55 -0.5
699,376 + CSW01_17960 0.61 +1.1
699,395 + CSW01_17960 0.63 +0.7
699,403 - CSW01_17960 0.64 +0.1
699,464 - CSW01_17960 0.71 -0.5
699,464 - CSW01_17960 0.71 -0.4
699,531 + CSW01_17960 0.78 +0.1
699,531 + CSW01_17960 0.78 +1.0
699,532 + CSW01_17960 0.78 +0.7
699,539 - CSW01_17960 0.79 +0.4
699,540 - CSW01_17960 0.79 -0.5
699,559 - CSW01_17960 0.81 -0.8
699,640 - +0.5
699,705 + +0.2
699,768 - +0.4
699,779 + +0.1
699,882 - CSW01_17965 0.15 +0.5
699,963 - CSW01_17965 0.27 +1.9
699,963 - CSW01_17965 0.27 -0.5
699,963 - CSW01_17965 0.27 -0.3
699,968 - CSW01_17965 0.28 -0.8
700,005 + CSW01_17965 0.33 -0.8
700,022 + CSW01_17965 0.36 +0.9
700,035 - CSW01_17965 0.38 -0.5
700,115 + CSW01_17965 0.50 -0.2
700,123 - CSW01_17965 0.51 -0.9
700,148 - CSW01_17965 0.55 +0.4
700,220 + CSW01_17965 0.66 -0.1
700,228 - CSW01_17965 0.67 +0.1
700,230 + CSW01_17965 0.67 -0.9
700,230 + CSW01_17965 0.67 -0.5
700,230 + CSW01_17965 0.67 +0.6
700,230 + CSW01_17965 0.67 +0.5
700,238 - CSW01_17965 0.68 -0.2
700,238 - CSW01_17965 0.68 +0.8
700,238 - CSW01_17965 0.68 +0.3
700,288 + CSW01_17965 0.76 -2.0
700,296 - CSW01_17965 0.77 +1.2
700,301 + CSW01_17965 0.78 +0.5
700,302 + CSW01_17965 0.78 +0.9
700,332 + CSW01_17965 0.82 -1.4
700,339 + CSW01_17965 0.83 -0.3
700,339 + CSW01_17965 0.83 -0.2
700,339 + CSW01_17965 0.83 +0.9
700,348 + CSW01_17965 0.85 +0.9
700,354 - CSW01_17965 0.86 -0.8
700,403 - +0.2
700,455 + +0.2
700,553 - CSW01_17970 0.16 +0.4
700,575 + CSW01_17970 0.19 -0.7
700,597 - CSW01_17970 0.22 -0.6
700,602 - CSW01_17970 0.23 -0.7
700,686 + CSW01_17970 0.35 -0.2
700,694 + CSW01_17970 0.36 +0.9
700,708 + CSW01_17970 0.38 -0.1
700,713 + CSW01_17970 0.39 +0.3

Or see this region's nucleotide sequence