Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17400

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17385 and CSW01_17390 are separated by 3 nucleotidesCSW01_17390 and CSW01_17395 are separated by 18 nucleotidesCSW01_17395 and CSW01_17400 overlap by 4 nucleotidesCSW01_17400 and CSW01_17405 overlap by 44 nucleotides CSW01_17385: CSW01_17385 - antibiotic biosynthesis monooxygenase, at 569,710 to 570,000 _17385 CSW01_17390: CSW01_17390 - oxygen-insensitive NAD(P)H-dependent nitroreductase NfsB, at 570,004 to 570,657 _17390 CSW01_17395: CSW01_17395 - hypothetical protein, at 570,676 to 570,876 _17395 CSW01_17400: CSW01_17400 - AcrB/AcrD/AcrF family protein, at 570,873 to 574,076 _17400 CSW01_17405: CSW01_17405 - efflux RND transporter periplasmic adaptor subunit, at 574,033 to 575,037 _17405 Position (kb) 570 571 572 573 574 575Strain fitness (log2 ratio) -2 -1 0 1 2at 569.918 kb on + strand, within CSW01_17385at 569.938 kb on - strand, within CSW01_17385at 569.972 kb on + strandat 570.091 kb on - strand, within CSW01_17390at 570.104 kb on - strand, within CSW01_17390at 570.106 kb on + strand, within CSW01_17390at 570.106 kb on + strand, within CSW01_17390at 570.106 kb on + strand, within CSW01_17390at 570.252 kb on - strand, within CSW01_17390at 570.378 kb on - strand, within CSW01_17390at 570.418 kb on - strand, within CSW01_17390at 570.465 kb on + strand, within CSW01_17390at 570.532 kb on + strand, within CSW01_17390at 570.556 kb on + strand, within CSW01_17390at 570.700 kb on - strand, within CSW01_17395at 570.821 kb on + strand, within CSW01_17395at 570.821 kb on + strand, within CSW01_17395at 570.878 kb on - strandat 570.907 kb on + strandat 570.912 kb on - strandat 570.912 kb on - strandat 570.933 kb on + strandat 570.933 kb on + strandat 570.938 kb on + strandat 570.938 kb on + strandat 570.941 kb on - strandat 571.005 kb on + strandat 571.005 kb on + strandat 571.056 kb on + strandat 571.096 kb on + strandat 571.096 kb on + strandat 571.096 kb on + strandat 571.096 kb on + strandat 571.096 kb on + strandat 571.104 kb on - strandat 571.104 kb on - strandat 571.104 kb on - strandat 571.104 kb on - strandat 571.212 kb on + strand, within CSW01_17400at 571.288 kb on + strand, within CSW01_17400at 571.288 kb on + strand, within CSW01_17400at 571.296 kb on - strand, within CSW01_17400at 571.296 kb on - strand, within CSW01_17400at 571.296 kb on - strand, within CSW01_17400at 571.408 kb on - strand, within CSW01_17400at 571.410 kb on + strand, within CSW01_17400at 571.432 kb on + strand, within CSW01_17400at 571.432 kb on + strand, within CSW01_17400at 571.432 kb on + strand, within CSW01_17400at 571.432 kb on + strand, within CSW01_17400at 571.432 kb on + strand, within CSW01_17400at 571.440 kb on - strand, within CSW01_17400at 571.440 kb on - strand, within CSW01_17400at 571.440 kb on - strand, within CSW01_17400at 571.540 kb on - strand, within CSW01_17400at 571.581 kb on + strand, within CSW01_17400at 571.658 kb on + strand, within CSW01_17400at 571.716 kb on + strand, within CSW01_17400at 571.728 kb on + strand, within CSW01_17400at 571.736 kb on - strand, within CSW01_17400at 571.797 kb on + strand, within CSW01_17400at 571.804 kb on + strand, within CSW01_17400at 571.812 kb on - strand, within CSW01_17400at 571.818 kb on - strand, within CSW01_17400at 572.025 kb on + strand, within CSW01_17400at 572.045 kb on + strand, within CSW01_17400at 572.053 kb on - strand, within CSW01_17400at 572.053 kb on - strand, within CSW01_17400at 572.068 kb on - strand, within CSW01_17400at 572.101 kb on - strand, within CSW01_17400at 572.101 kb on - strand, within CSW01_17400at 572.101 kb on - strand, within CSW01_17400at 572.101 kb on - strand, within CSW01_17400at 572.101 kb on - strand, within CSW01_17400at 572.124 kb on + strand, within CSW01_17400at 572.364 kb on - strand, within CSW01_17400at 572.364 kb on - strand, within CSW01_17400at 572.364 kb on - strand, within CSW01_17400at 572.364 kb on - strand, within CSW01_17400at 572.435 kb on + strand, within CSW01_17400at 572.454 kb on - strand, within CSW01_17400at 572.493 kb on + strand, within CSW01_17400at 572.807 kb on - strand, within CSW01_17400at 572.851 kb on + strand, within CSW01_17400at 572.851 kb on - strand, within CSW01_17400at 572.932 kb on + strand, within CSW01_17400at 572.992 kb on + strand, within CSW01_17400at 572.992 kb on + strand, within CSW01_17400at 573.078 kb on + strand, within CSW01_17400at 573.078 kb on + strand, within CSW01_17400at 573.140 kb on + strand, within CSW01_17400at 573.148 kb on - strand, within CSW01_17400at 573.148 kb on - strand, within CSW01_17400at 573.148 kb on - strand, within CSW01_17400at 573.253 kb on + strand, within CSW01_17400at 573.253 kb on + strand, within CSW01_17400at 573.268 kb on + strand, within CSW01_17400at 573.298 kb on + strand, within CSW01_17400at 573.298 kb on + strand, within CSW01_17400at 573.306 kb on - strand, within CSW01_17400at 573.306 kb on - strand, within CSW01_17400at 573.353 kb on + strand, within CSW01_17400at 573.398 kb on + strand, within CSW01_17400at 573.398 kb on + strand, within CSW01_17400at 573.398 kb on + strand, within CSW01_17400at 573.410 kb on + strand, within CSW01_17400at 573.410 kb on + strand, within CSW01_17400at 573.482 kb on - strand, within CSW01_17400at 573.502 kb on + strand, within CSW01_17400at 573.638 kb on + strand, within CSW01_17400at 573.640 kb on - strand, within CSW01_17400at 573.646 kb on - strand, within CSW01_17400at 573.646 kb on - strand, within CSW01_17400at 573.721 kb on + strand, within CSW01_17400at 573.801 kb on + strandat 573.828 kb on + strandat 574.057 kb on - strandat 574.112 kb on + strandat 574.112 kb on + strandat 574.112 kb on + strandat 574.112 kb on + strandat 574.112 kb on + strandat 574.120 kb on - strandat 574.120 kb on - strandat 574.120 kb on - strandat 574.131 kb on + strandat 574.180 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.207 kb on + strand, within CSW01_17405at 574.220 kb on - strand, within CSW01_17405at 574.241 kb on - strand, within CSW01_17405at 574.307 kb on + strand, within CSW01_17405at 574.361 kb on + strand, within CSW01_17405at 574.369 kb on - strand, within CSW01_17405at 574.430 kb on - strand, within CSW01_17405at 574.497 kb on + strand, within CSW01_17405at 574.505 kb on + strand, within CSW01_17405at 574.525 kb on + strand, within CSW01_17405at 574.538 kb on - strand, within CSW01_17405at 574.538 kb on - strand, within CSW01_17405at 574.553 kb on - strand, within CSW01_17405at 574.563 kb on + strand, within CSW01_17405at 574.607 kb on + strand, within CSW01_17405at 574.703 kb on + strand, within CSW01_17405at 574.711 kb on - strand, within CSW01_17405at 574.863 kb on + strand, within CSW01_17405at 574.871 kb on - strand, within CSW01_17405at 574.903 kb on + strand, within CSW01_17405at 574.905 kb on + strand, within CSW01_17405at 574.913 kb on - strand, within CSW01_17405at 574.913 kb on - strand, within CSW01_17405at 574.913 kb on - strand, within CSW01_17405at 574.913 kb on - strand, within CSW01_17405at 574.980 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
remove
569,918 + CSW01_17385 0.71 -0.3
569,938 - CSW01_17385 0.78 -0.4
569,972 + -0.8
570,091 - CSW01_17390 0.13 -1.4
570,104 - CSW01_17390 0.15 -0.6
570,106 + CSW01_17390 0.16 +0.1
570,106 + CSW01_17390 0.16 -0.2
570,106 + CSW01_17390 0.16 -0.7
570,252 - CSW01_17390 0.38 +0.5
570,378 - CSW01_17390 0.57 +0.4
570,418 - CSW01_17390 0.63 -1.0
570,465 + CSW01_17390 0.70 -0.3
570,532 + CSW01_17390 0.81 -0.6
570,556 + CSW01_17390 0.84 -0.5
570,700 - CSW01_17395 0.12 +0.5
570,821 + CSW01_17395 0.72 -0.0
570,821 + CSW01_17395 0.72 +0.7
570,878 - -0.3
570,907 + +0.8
570,912 - -1.4
570,912 - +0.7
570,933 + +1.9
570,933 + +1.0
570,938 + +0.9
570,938 + +0.4
570,941 - +0.6
571,005 + -0.2
571,005 + +0.3
571,056 + +1.4
571,096 + +0.0
571,096 + +0.4
571,096 + +0.2
571,096 + -1.5
571,096 + +0.0
571,104 - +1.0
571,104 - +0.8
571,104 - -1.1
571,104 - +1.7
571,212 + CSW01_17400 0.11 +0.3
571,288 + CSW01_17400 0.13 +0.1
571,288 + CSW01_17400 0.13 +0.9
571,296 - CSW01_17400 0.13 +0.2
571,296 - CSW01_17400 0.13 -0.3
571,296 - CSW01_17400 0.13 -0.4
571,408 - CSW01_17400 0.17 +0.6
571,410 + CSW01_17400 0.17 +0.4
571,432 + CSW01_17400 0.17 +0.0
571,432 + CSW01_17400 0.17 +0.7
571,432 + CSW01_17400 0.17 -1.6
571,432 + CSW01_17400 0.17 -0.1
571,432 + CSW01_17400 0.17 +0.6
571,440 - CSW01_17400 0.18 +0.8
571,440 - CSW01_17400 0.18 +0.0
571,440 - CSW01_17400 0.18 -0.2
571,540 - CSW01_17400 0.21 +0.6
571,581 + CSW01_17400 0.22 -1.2
571,658 + CSW01_17400 0.25 +1.4
571,716 + CSW01_17400 0.26 -0.3
571,728 + CSW01_17400 0.27 -0.6
571,736 - CSW01_17400 0.27 +0.4
571,797 + CSW01_17400 0.29 -0.3
571,804 + CSW01_17400 0.29 +0.7
571,812 - CSW01_17400 0.29 +0.3
571,818 - CSW01_17400 0.29 -0.3
572,025 + CSW01_17400 0.36 -0.7
572,045 + CSW01_17400 0.37 -1.1
572,053 - CSW01_17400 0.37 -2.0
572,053 - CSW01_17400 0.37 +0.0
572,068 - CSW01_17400 0.37 +0.3
572,101 - CSW01_17400 0.38 -0.7
572,101 - CSW01_17400 0.38 -0.7
572,101 - CSW01_17400 0.38 -0.6
572,101 - CSW01_17400 0.38 -0.6
572,101 - CSW01_17400 0.38 -0.1
572,124 + CSW01_17400 0.39 -0.3
572,364 - CSW01_17400 0.47 +1.3
572,364 - CSW01_17400 0.47 +0.3
572,364 - CSW01_17400 0.47 -1.0
572,364 - CSW01_17400 0.47 -0.5
572,435 + CSW01_17400 0.49 +0.2
572,454 - CSW01_17400 0.49 -0.1
572,493 + CSW01_17400 0.51 +0.3
572,807 - CSW01_17400 0.60 +0.3
572,851 + CSW01_17400 0.62 -0.4
572,851 - CSW01_17400 0.62 -0.3
572,932 + CSW01_17400 0.64 -0.2
572,992 + CSW01_17400 0.66 +0.2
572,992 + CSW01_17400 0.66 -0.2
573,078 + CSW01_17400 0.69 -0.1
573,078 + CSW01_17400 0.69 -1.4
573,140 + CSW01_17400 0.71 +0.6
573,148 - CSW01_17400 0.71 -0.0
573,148 - CSW01_17400 0.71 -0.7
573,148 - CSW01_17400 0.71 -1.0
573,253 + CSW01_17400 0.74 -0.9
573,253 + CSW01_17400 0.74 +0.4
573,268 + CSW01_17400 0.75 +0.8
573,298 + CSW01_17400 0.76 +0.3
573,298 + CSW01_17400 0.76 -0.3
573,306 - CSW01_17400 0.76 -0.2
573,306 - CSW01_17400 0.76 +0.6
573,353 + CSW01_17400 0.77 +0.1
573,398 + CSW01_17400 0.79 -1.7
573,398 + CSW01_17400 0.79 -0.3
573,398 + CSW01_17400 0.79 +0.3
573,410 + CSW01_17400 0.79 +1.3
573,410 + CSW01_17400 0.79 -0.1
573,482 - CSW01_17400 0.81 -0.7
573,502 + CSW01_17400 0.82 -1.2
573,638 + CSW01_17400 0.86 +0.0
573,640 - CSW01_17400 0.86 +1.3
573,646 - CSW01_17400 0.87 +1.2
573,646 - CSW01_17400 0.87 +0.0
573,721 + CSW01_17400 0.89 -0.4
573,801 + -0.4
573,828 + +0.8
574,057 - +1.0
574,112 + +1.6
574,112 + -0.2
574,112 + +0.1
574,112 + -0.1
574,112 + +1.0
574,120 - +0.7
574,120 - +0.4
574,120 - +0.6
574,131 + +1.3
574,180 + CSW01_17405 0.15 +0.1
574,192 + CSW01_17405 0.16 +0.7
574,192 + CSW01_17405 0.16 -0.6
574,192 + CSW01_17405 0.16 +0.5
574,192 + CSW01_17405 0.16 +0.9
574,192 + CSW01_17405 0.16 -0.3
574,200 - CSW01_17405 0.17 -0.4
574,200 - CSW01_17405 0.17 +1.0
574,200 - CSW01_17405 0.17 -0.2
574,200 - CSW01_17405 0.17 +0.4
574,200 - CSW01_17405 0.17 -2.0
574,200 - CSW01_17405 0.17 +0.9
574,200 - CSW01_17405 0.17 -0.4
574,200 - CSW01_17405 0.17 -0.6
574,200 - CSW01_17405 0.17 +0.5
574,207 + CSW01_17405 0.17 -0.0
574,220 - CSW01_17405 0.19 -0.4
574,241 - CSW01_17405 0.21 -0.0
574,307 + CSW01_17405 0.27 +0.4
574,361 + CSW01_17405 0.33 +0.3
574,369 - CSW01_17405 0.33 +0.5
574,430 - CSW01_17405 0.40 +0.1
574,497 + CSW01_17405 0.46 +0.1
574,505 + CSW01_17405 0.47 +0.3
574,525 + CSW01_17405 0.49 -0.6
574,538 - CSW01_17405 0.50 -0.3
574,538 - CSW01_17405 0.50 +1.5
574,553 - CSW01_17405 0.52 +0.1
574,563 + CSW01_17405 0.53 -0.8
574,607 + CSW01_17405 0.57 +0.4
574,703 + CSW01_17405 0.67 -0.3
574,711 - CSW01_17405 0.67 -0.5
574,863 + CSW01_17405 0.83 -0.4
574,871 - CSW01_17405 0.83 +1.0
574,903 + CSW01_17405 0.87 -0.4
574,905 + CSW01_17405 0.87 +0.2
574,913 - CSW01_17405 0.88 +0.2
574,913 - CSW01_17405 0.88 +1.6
574,913 - CSW01_17405 0.88 -0.4
574,913 - CSW01_17405 0.88 +0.7
574,980 - +0.8

Or see this region's nucleotide sequence