Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16820

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_16810 and CSW01_16815 are separated by 57 nucleotidesCSW01_16815 and CSW01_16820 are separated by 233 nucleotidesCSW01_16820 and CSW01_16825 are separated by 12 nucleotidesCSW01_16825 and CSW01_16830 are separated by 10 nucleotides CSW01_16810: CSW01_16810 - aspartate/tyrosine/aromatic aminotransferase, at 441,186 to 442,367 _16810 CSW01_16815: CSW01_16815 - ATP-dependent zinc protease, at 442,425 to 443,108 _16815 CSW01_16820: CSW01_16820 - PTS fructose transporter subunit IIBC, at 443,342 to 445,084 _16820 CSW01_16825: CSW01_16825 - 1-phosphofructokinase, at 445,097 to 446,050 _16825 CSW01_16830: CSW01_16830 - bifunctional PTS fructose transporter subunit IIA/HPr protein, at 446,061 to 447,263 _16830 Position (kb) 443 444 445 446Strain fitness (log2 ratio) -2 -1 0 1 2at 442.434 kb on + strandat 442.551 kb on + strand, within CSW01_16815at 442.595 kb on + strand, within CSW01_16815at 442.595 kb on + strand, within CSW01_16815at 442.602 kb on + strand, within CSW01_16815at 442.922 kb on + strand, within CSW01_16815at 442.922 kb on + strand, within CSW01_16815at 442.922 kb on + strand, within CSW01_16815at 442.922 kb on + strand, within CSW01_16815at 442.930 kb on - strand, within CSW01_16815at 442.930 kb on - strand, within CSW01_16815at 442.930 kb on - strand, within CSW01_16815at 442.930 kb on - strand, within CSW01_16815at 443.001 kb on + strand, within CSW01_16815at 443.001 kb on + strand, within CSW01_16815at 443.001 kb on + strand, within CSW01_16815at 443.411 kb on + strandat 443.514 kb on + strandat 443.544 kb on - strand, within CSW01_16820at 443.607 kb on + strand, within CSW01_16820at 443.618 kb on - strand, within CSW01_16820at 443.656 kb on + strand, within CSW01_16820at 443.702 kb on + strand, within CSW01_16820at 443.722 kb on - strand, within CSW01_16820at 443.793 kb on + strand, within CSW01_16820at 443.839 kb on + strand, within CSW01_16820at 443.839 kb on + strand, within CSW01_16820at 443.839 kb on + strand, within CSW01_16820at 443.839 kb on + strand, within CSW01_16820at 443.839 kb on + strand, within CSW01_16820at 443.839 kb on + strand, within CSW01_16820at 443.847 kb on - strand, within CSW01_16820at 443.847 kb on - strand, within CSW01_16820at 443.847 kb on - strand, within CSW01_16820at 443.847 kb on - strand, within CSW01_16820at 443.872 kb on - strand, within CSW01_16820at 444.000 kb on + strand, within CSW01_16820at 444.259 kb on + strand, within CSW01_16820at 444.428 kb on + strand, within CSW01_16820at 444.450 kb on + strand, within CSW01_16820at 444.450 kb on + strand, within CSW01_16820at 444.471 kb on + strand, within CSW01_16820at 444.623 kb on + strand, within CSW01_16820at 444.623 kb on + strand, within CSW01_16820at 444.631 kb on - strand, within CSW01_16820at 444.631 kb on - strand, within CSW01_16820at 444.669 kb on - strand, within CSW01_16820at 444.669 kb on - strand, within CSW01_16820at 444.676 kb on - strand, within CSW01_16820at 444.770 kb on + strand, within CSW01_16820at 444.770 kb on + strand, within CSW01_16820at 444.775 kb on - strand, within CSW01_16820at 444.932 kb on + strandat 444.938 kb on + strandat 444.951 kb on - strandat 444.955 kb on + strandat 445.088 kb on + strandat 445.096 kb on - strandat 445.154 kb on - strandat 445.174 kb on + strandat 445.177 kb on - strandat 445.234 kb on - strand, within CSW01_16825at 445.265 kb on + strand, within CSW01_16825at 445.268 kb on - strand, within CSW01_16825at 445.273 kb on - strand, within CSW01_16825at 445.273 kb on - strand, within CSW01_16825at 445.273 kb on - strand, within CSW01_16825at 445.456 kb on + strand, within CSW01_16825at 445.556 kb on - strand, within CSW01_16825at 445.594 kb on + strand, within CSW01_16825at 445.599 kb on + strand, within CSW01_16825at 445.607 kb on - strand, within CSW01_16825at 445.607 kb on - strand, within CSW01_16825at 445.612 kb on - strand, within CSW01_16825at 445.671 kb on - strand, within CSW01_16825at 445.714 kb on + strand, within CSW01_16825at 445.752 kb on - strand, within CSW01_16825at 445.823 kb on - strand, within CSW01_16825at 445.918 kb on + strand, within CSW01_16825at 445.985 kb on - strandat 445.995 kb on - strandat 445.995 kb on - strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.078 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
remove
442,434 + -0.4
442,551 + CSW01_16815 0.18 -0.8
442,595 + CSW01_16815 0.25 +0.3
442,595 + CSW01_16815 0.25 -1.9
442,602 + CSW01_16815 0.26 +0.4
442,922 + CSW01_16815 0.73 -0.0
442,922 + CSW01_16815 0.73 +0.6
442,922 + CSW01_16815 0.73 +1.0
442,922 + CSW01_16815 0.73 +0.2
442,930 - CSW01_16815 0.74 -0.4
442,930 - CSW01_16815 0.74 +0.1
442,930 - CSW01_16815 0.74 +0.4
442,930 - CSW01_16815 0.74 -0.8
443,001 + CSW01_16815 0.84 +0.2
443,001 + CSW01_16815 0.84 +0.4
443,001 + CSW01_16815 0.84 -0.5
443,411 + -0.6
443,514 + +0.4
443,544 - CSW01_16820 0.12 -1.8
443,607 + CSW01_16820 0.15 +0.6
443,618 - CSW01_16820 0.16 -1.5
443,656 + CSW01_16820 0.18 -0.0
443,702 + CSW01_16820 0.21 +1.0
443,722 - CSW01_16820 0.22 -0.7
443,793 + CSW01_16820 0.26 +1.0
443,839 + CSW01_16820 0.29 +0.8
443,839 + CSW01_16820 0.29 -0.0
443,839 + CSW01_16820 0.29 +0.8
443,839 + CSW01_16820 0.29 +0.1
443,839 + CSW01_16820 0.29 -0.6
443,839 + CSW01_16820 0.29 -0.3
443,847 - CSW01_16820 0.29 +0.9
443,847 - CSW01_16820 0.29 -0.2
443,847 - CSW01_16820 0.29 -0.1
443,847 - CSW01_16820 0.29 +0.5
443,872 - CSW01_16820 0.30 +0.5
444,000 + CSW01_16820 0.38 +0.1
444,259 + CSW01_16820 0.53 +0.2
444,428 + CSW01_16820 0.62 -0.4
444,450 + CSW01_16820 0.64 -0.4
444,450 + CSW01_16820 0.64 -0.0
444,471 + CSW01_16820 0.65 -0.7
444,623 + CSW01_16820 0.73 +0.5
444,623 + CSW01_16820 0.73 +1.6
444,631 - CSW01_16820 0.74 +0.5
444,631 - CSW01_16820 0.74 +0.2
444,669 - CSW01_16820 0.76 +1.4
444,669 - CSW01_16820 0.76 +0.3
444,676 - CSW01_16820 0.77 -1.0
444,770 + CSW01_16820 0.82 +1.0
444,770 + CSW01_16820 0.82 +1.8
444,775 - CSW01_16820 0.82 -0.2
444,932 + +0.8
444,938 + +0.1
444,951 - +0.1
444,955 + +0.1
445,088 + -0.3
445,096 - +1.0
445,154 - -0.9
445,174 + -0.1
445,177 - +1.5
445,234 - CSW01_16825 0.14 +0.5
445,265 + CSW01_16825 0.18 +1.0
445,268 - CSW01_16825 0.18 +0.1
445,273 - CSW01_16825 0.18 -0.8
445,273 - CSW01_16825 0.18 -1.2
445,273 - CSW01_16825 0.18 +1.2
445,456 + CSW01_16825 0.38 -1.6
445,556 - CSW01_16825 0.48 +0.3
445,594 + CSW01_16825 0.52 -0.1
445,599 + CSW01_16825 0.53 -0.6
445,607 - CSW01_16825 0.53 -0.0
445,607 - CSW01_16825 0.53 +0.4
445,612 - CSW01_16825 0.54 +0.3
445,671 - CSW01_16825 0.60 -0.0
445,714 + CSW01_16825 0.65 +0.4
445,752 - CSW01_16825 0.69 +0.2
445,823 - CSW01_16825 0.76 -0.6
445,918 + CSW01_16825 0.86 -0.3
445,985 - +2.6
445,995 - +0.6
445,995 - +1.2
446,058 + +0.3
446,058 + +1.0
446,058 + -0.1
446,058 + -0.2
446,058 + -0.0
446,058 + +0.8
446,058 + -0.6
446,058 + -0.0
446,066 - -0.2
446,066 - -0.2
446,066 - -0.0
446,066 - -0.7
446,066 - +0.1
446,066 - -0.7
446,066 - -0.8
446,066 - -1.0
446,078 - +0.1

Or see this region's nucleotide sequence