Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16695

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16675 and CSW01_16680 are separated by 9 nucleotidesCSW01_16680 and CSW01_16685 are separated by 81 nucleotidesCSW01_16685 and CSW01_16690 overlap by 13 nucleotidesCSW01_16690 and CSW01_16695 are separated by 233 nucleotidesCSW01_16695 and CSW01_16700 are separated by 14 nucleotidesCSW01_16700 and CSW01_16705 overlap by 59 nucleotidesCSW01_16705 and CSW01_16710 are separated by 135 nucleotides CSW01_16675: CSW01_16675 - N-acetyltransferase, at 423,073 to 423,606 _16675 CSW01_16680: CSW01_16680 - DUF3265 domain-containing protein, at 423,616 to 423,726 _16680 CSW01_16685: CSW01_16685 - prevent-host-death family protein, at 423,808 to 424,065 _16685 CSW01_16690: CSW01_16690 - type II toxin-antitoxin system RelE/ParE family toxin, at 424,053 to 424,355 _16690 CSW01_16695: CSW01_16695 - alpha/beta hydrolase, at 424,589 to 425,506 _16695 CSW01_16700: CSW01_16700 - hypothetical protein, at 425,521 to 425,721 _16700 CSW01_16705: CSW01_16705 - hypothetical protein, at 425,663 to 426,052 _16705 CSW01_16710: CSW01_16710 - acetyltransferase, at 426,188 to 426,472 _16710 Position (kb) 424 425 426Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 423.664 kb on + strand, within CSW01_16680at 423.846 kb on - strand, within CSW01_16685at 424.038 kb on + strand, within CSW01_16685at 424.082 kb on - strandat 424.083 kb on - strandat 424.087 kb on - strand, within CSW01_16690at 424.092 kb on - strand, within CSW01_16690at 424.112 kb on - strand, within CSW01_16690at 424.204 kb on - strand, within CSW01_16690at 424.902 kb on + strand, within CSW01_16695at 424.902 kb on + strand, within CSW01_16695at 424.908 kb on - strand, within CSW01_16695at 424.910 kb on - strand, within CSW01_16695at 424.910 kb on - strand, within CSW01_16695at 424.910 kb on - strand, within CSW01_16695at 424.910 kb on - strand, within CSW01_16695at 424.912 kb on - strand, within CSW01_16695at 424.912 kb on - strand, within CSW01_16695at 424.921 kb on + strand, within CSW01_16695at 424.924 kb on + strand, within CSW01_16695at 424.926 kb on + strand, within CSW01_16695at 424.931 kb on + strand, within CSW01_16695at 424.939 kb on - strand, within CSW01_16695at 424.945 kb on + strand, within CSW01_16695at 424.945 kb on + strand, within CSW01_16695at 425.001 kb on + strand, within CSW01_16695at 425.035 kb on - strand, within CSW01_16695at 425.049 kb on + strand, within CSW01_16695at 425.057 kb on - strand, within CSW01_16695at 425.139 kb on + strand, within CSW01_16695at 425.148 kb on + strand, within CSW01_16695at 425.148 kb on + strand, within CSW01_16695at 425.227 kb on + strand, within CSW01_16695at 425.330 kb on + strand, within CSW01_16695at 425.338 kb on - strand, within CSW01_16695at 425.340 kb on - strand, within CSW01_16695at 425.340 kb on - strand, within CSW01_16695at 425.362 kb on + strand, within CSW01_16695at 425.362 kb on + strand, within CSW01_16695at 425.396 kb on - strand, within CSW01_16695at 425.642 kb on - strand, within CSW01_16700at 425.969 kb on + strand, within CSW01_16705at 425.974 kb on + strand, within CSW01_16705at 425.986 kb on + strand, within CSW01_16705at 426.010 kb on - strand, within CSW01_16705at 426.181 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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423,664 + CSW01_16680 0.43 +1.8
423,846 - CSW01_16685 0.15 -3.0
424,038 + CSW01_16685 0.89 -2.0
424,082 - +1.0
424,083 - +0.3
424,087 - CSW01_16690 0.11 +0.4
424,092 - CSW01_16690 0.13 +1.9
424,112 - CSW01_16690 0.19 +1.6
424,204 - CSW01_16690 0.50 +2.6
424,902 + CSW01_16695 0.34 +0.4
424,902 + CSW01_16695 0.34 -0.3
424,908 - CSW01_16695 0.35 -0.9
424,910 - CSW01_16695 0.35 +0.5
424,910 - CSW01_16695 0.35 +1.5
424,910 - CSW01_16695 0.35 +0.2
424,910 - CSW01_16695 0.35 +0.4
424,912 - CSW01_16695 0.35 +0.1
424,912 - CSW01_16695 0.35 -0.1
424,921 + CSW01_16695 0.36 +0.7
424,924 + CSW01_16695 0.36 -0.0
424,926 + CSW01_16695 0.37 +0.5
424,931 + CSW01_16695 0.37 +0.3
424,939 - CSW01_16695 0.38 +0.3
424,945 + CSW01_16695 0.39 +0.4
424,945 + CSW01_16695 0.39 -0.0
425,001 + CSW01_16695 0.45 -0.0
425,035 - CSW01_16695 0.49 +0.1
425,049 + CSW01_16695 0.50 -0.0
425,057 - CSW01_16695 0.51 +0.3
425,139 + CSW01_16695 0.60 +0.3
425,148 + CSW01_16695 0.61 -0.6
425,148 + CSW01_16695 0.61 +0.8
425,227 + CSW01_16695 0.69 +1.4
425,330 + CSW01_16695 0.81 +0.2
425,338 - CSW01_16695 0.82 +0.4
425,340 - CSW01_16695 0.82 +0.9
425,340 - CSW01_16695 0.82 +0.1
425,362 + CSW01_16695 0.84 +0.4
425,362 + CSW01_16695 0.84 +1.2
425,396 - CSW01_16695 0.88 -0.6
425,642 - CSW01_16700 0.60 +0.7
425,969 + CSW01_16705 0.78 +0.2
425,974 + CSW01_16705 0.80 +0.1
425,986 + CSW01_16705 0.83 -0.1
426,010 - CSW01_16705 0.89 +0.0
426,181 - -0.5

Or see this region's nucleotide sequence