Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16455

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16450 and CSW01_16455 are separated by 232 nucleotidesCSW01_16455 and CSW01_16460 overlap by 10 nucleotidesCSW01_16460 and CSW01_16465 are separated by 83 nucleotidesCSW01_16465 and CSW01_16470 overlap by 49 nucleotidesCSW01_16470 and CSW01_16475 are separated by 322 nucleotides CSW01_16450: CSW01_16450 - sulfate transporter subunit, at 403,348 to 404,333 _16450 CSW01_16455: CSW01_16455 - DJ-1/PfpI family protein, at 404,566 to 405,162 _16455 CSW01_16460: CSW01_16460 - acetyltransferase, at 405,153 to 405,290 _16460 CSW01_16465: CSW01_16465 - general secretion pathway protein GspH, at 405,374 to 405,514 _16465 CSW01_16470: CSW01_16470 - DUF645 domain-containing protein, at 405,466 to 405,636 _16470 CSW01_16475: CSW01_16475 - hypothetical protein, at 405,959 to 406,573 _16475 Position (kb) 404 405 406Strain fitness (log2 ratio) -2 -1 0 1 2 3at 403.708 kb on + strand, within CSW01_16450at 403.708 kb on + strand, within CSW01_16450at 403.708 kb on + strand, within CSW01_16450at 403.716 kb on - strand, within CSW01_16450at 403.716 kb on - strand, within CSW01_16450at 403.716 kb on - strand, within CSW01_16450at 403.716 kb on - strand, within CSW01_16450at 403.726 kb on - strand, within CSW01_16450at 403.761 kb on + strand, within CSW01_16450at 403.761 kb on - strand, within CSW01_16450at 403.762 kb on - strand, within CSW01_16450at 403.768 kb on + strand, within CSW01_16450at 403.776 kb on - strand, within CSW01_16450at 403.821 kb on - strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.852 kb on + strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.860 kb on - strand, within CSW01_16450at 403.892 kb on - strand, within CSW01_16450at 403.899 kb on + strand, within CSW01_16450at 403.907 kb on - strand, within CSW01_16450at 403.930 kb on + strand, within CSW01_16450at 403.930 kb on + strand, within CSW01_16450at 403.938 kb on - strand, within CSW01_16450at 403.967 kb on + strand, within CSW01_16450at 403.975 kb on - strand, within CSW01_16450at 403.999 kb on + strand, within CSW01_16450at 404.009 kb on + strand, within CSW01_16450at 404.146 kb on + strand, within CSW01_16450at 404.154 kb on - strand, within CSW01_16450at 404.154 kb on - strand, within CSW01_16450at 404.160 kb on + strand, within CSW01_16450at 404.214 kb on + strand, within CSW01_16450at 404.214 kb on + strand, within CSW01_16450at 404.222 kb on - strand, within CSW01_16450at 404.222 kb on - strand, within CSW01_16450at 404.267 kb on - strandat 404.462 kb on - strandat 404.462 kb on - strandat 404.630 kb on + strand, within CSW01_16455at 404.631 kb on + strand, within CSW01_16455at 404.655 kb on - strand, within CSW01_16455at 404.665 kb on + strand, within CSW01_16455at 404.814 kb on - strand, within CSW01_16455at 404.859 kb on + strand, within CSW01_16455at 404.974 kb on + strand, within CSW01_16455at 405.023 kb on + strand, within CSW01_16455at 405.030 kb on + strand, within CSW01_16455at 405.109 kb on - strandat 405.144 kb on - strandat 405.191 kb on - strand, within CSW01_16460at 405.196 kb on - strand, within CSW01_16460at 405.560 kb on - strand, within CSW01_16470at 405.565 kb on - strand, within CSW01_16470at 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on - strandat 405.883 kb on - strandat 405.883 kb on - strandat 405.883 kb on - strandat 405.890 kb on - strandat 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.135 kb on - strand, within CSW01_16475at 406.135 kb on - strand, within CSW01_16475

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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403,708 + CSW01_16450 0.37 -0.9
403,708 + CSW01_16450 0.37 -0.6
403,708 + CSW01_16450 0.37 +0.5
403,716 - CSW01_16450 0.37 -1.9
403,716 - CSW01_16450 0.37 +0.9
403,716 - CSW01_16450 0.37 -0.2
403,716 - CSW01_16450 0.37 +0.4
403,726 - CSW01_16450 0.38 -0.5
403,761 + CSW01_16450 0.42 +0.5
403,761 - CSW01_16450 0.42 +0.8
403,762 - CSW01_16450 0.42 +0.5
403,768 + CSW01_16450 0.43 +1.8
403,776 - CSW01_16450 0.43 -0.2
403,821 - CSW01_16450 0.48 -0.2
403,852 + CSW01_16450 0.51 -0.0
403,852 + CSW01_16450 0.51 -1.2
403,852 + CSW01_16450 0.51 +0.2
403,852 + CSW01_16450 0.51 -0.0
403,852 + CSW01_16450 0.51 -0.4
403,852 + CSW01_16450 0.51 -0.2
403,852 + CSW01_16450 0.51 +0.3
403,852 + CSW01_16450 0.51 -0.0
403,852 + CSW01_16450 0.51 -0.3
403,852 + CSW01_16450 0.51 -0.1
403,852 + CSW01_16450 0.51 +0.6
403,852 + CSW01_16450 0.51 -1.1
403,852 + CSW01_16450 0.51 -1.0
403,852 + CSW01_16450 0.51 -0.3
403,852 + CSW01_16450 0.51 -1.5
403,852 + CSW01_16450 0.51 -0.9
403,852 + CSW01_16450 0.51 -0.4
403,852 + CSW01_16450 0.51 +0.6
403,852 + CSW01_16450 0.51 -0.2
403,852 + CSW01_16450 0.51 +0.6
403,860 - CSW01_16450 0.52 -0.3
403,860 - CSW01_16450 0.52 +0.2
403,860 - CSW01_16450 0.52 +0.7
403,860 - CSW01_16450 0.52 +0.4
403,860 - CSW01_16450 0.52 -0.6
403,860 - CSW01_16450 0.52 -0.6
403,860 - CSW01_16450 0.52 -0.4
403,860 - CSW01_16450 0.52 -0.1
403,860 - CSW01_16450 0.52 +0.5
403,860 - CSW01_16450 0.52 +1.0
403,860 - CSW01_16450 0.52 -0.3
403,860 - CSW01_16450 0.52 +0.3
403,860 - CSW01_16450 0.52 -0.2
403,860 - CSW01_16450 0.52 +0.3
403,860 - CSW01_16450 0.52 -0.0
403,860 - CSW01_16450 0.52 -0.7
403,860 - CSW01_16450 0.52 -0.1
403,860 - CSW01_16450 0.52 -0.0
403,860 - CSW01_16450 0.52 -0.4
403,860 - CSW01_16450 0.52 +1.5
403,860 - CSW01_16450 0.52 +0.2
403,860 - CSW01_16450 0.52 +0.1
403,860 - CSW01_16450 0.52 +0.0
403,860 - CSW01_16450 0.52 -0.2
403,860 - CSW01_16450 0.52 -0.6
403,860 - CSW01_16450 0.52 -0.6
403,892 - CSW01_16450 0.55 +2.8
403,899 + CSW01_16450 0.56 -0.4
403,907 - CSW01_16450 0.57 -0.4
403,930 + CSW01_16450 0.59 -0.5
403,930 + CSW01_16450 0.59 +0.3
403,938 - CSW01_16450 0.60 -1.6
403,967 + CSW01_16450 0.63 -0.2
403,975 - CSW01_16450 0.64 -0.1
403,999 + CSW01_16450 0.66 +1.4
404,009 + CSW01_16450 0.67 +0.9
404,146 + CSW01_16450 0.81 -0.3
404,154 - CSW01_16450 0.82 -0.3
404,154 - CSW01_16450 0.82 -0.8
404,160 + CSW01_16450 0.82 -0.4
404,214 + CSW01_16450 0.88 -0.1
404,214 + CSW01_16450 0.88 +0.5
404,222 - CSW01_16450 0.89 +0.8
404,222 - CSW01_16450 0.89 +0.6
404,267 - +1.1
404,462 - -0.1
404,462 - -0.2
404,630 + CSW01_16455 0.11 -1.4
404,631 + CSW01_16455 0.11 +0.3
404,655 - CSW01_16455 0.15 +0.0
404,665 + CSW01_16455 0.17 -0.7
404,814 - CSW01_16455 0.42 -0.2
404,859 + CSW01_16455 0.49 +0.5
404,974 + CSW01_16455 0.68 -0.7
405,023 + CSW01_16455 0.77 -0.5
405,030 + CSW01_16455 0.78 +0.1
405,109 - -0.0
405,144 - +0.5
405,191 - CSW01_16460 0.28 +1.3
405,196 - CSW01_16460 0.31 -0.2
405,560 - CSW01_16470 0.55 +0.7
405,565 - CSW01_16470 0.58 -0.2
405,875 + -0.0
405,875 + -2.3
405,875 + -0.9
405,875 + +0.0
405,875 + +0.3
405,875 + +0.2
405,875 - +0.6
405,883 - -0.1
405,883 - +0.6
405,883 - -0.5
405,890 - +0.1
406,127 + CSW01_16475 0.27 -0.2
406,127 + CSW01_16475 0.27 +0.2
406,127 + CSW01_16475 0.27 +3.0
406,127 + CSW01_16475 0.27 -0.1
406,127 + CSW01_16475 0.27 -0.2
406,127 + CSW01_16475 0.27 -0.0
406,127 + CSW01_16475 0.27 +0.7
406,127 + CSW01_16475 0.27 -0.0
406,127 + CSW01_16475 0.27 -0.4
406,127 + CSW01_16475 0.27 -2.3
406,135 - CSW01_16475 0.29 +1.3
406,135 - CSW01_16475 0.29 -0.8

Or see this region's nucleotide sequence