Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16395 and CSW01_16400 overlap by 11 nucleotides CSW01_16400 and CSW01_16405 are separated by 264 nucleotides CSW01_16405 and CSW01_16410 are separated by 75 nucleotides CSW01_16410 and CSW01_16415 are separated by 271 nucleotides CSW01_16415 and CSW01_16420 are separated by 177 nucleotides
CSW01_16395: CSW01_16395 - type II toxin-antitoxin system RelE/ParE family toxin, at 397,477 to 397,767
_16395
CSW01_16400: CSW01_16400 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 397,757 to 398,005
_16400
CSW01_16405: CSW01_16405 - hemagglutinin, at 398,270 to 398,461
_16405
CSW01_16410: CSW01_16410 - site-specific DNA-methyltransferase, at 398,537 to 399,229
_16410
CSW01_16415: CSW01_16415 - hypothetical protein, at 399,501 to 399,926
_16415
CSW01_16420: CSW01_16420 - DUF3465 domain-containing protein, at 400,104 to 400,529
_16420
Position (kb) 398
399
400 Strain fitness (log2 ratio) -1
0
1 at 397.628 kb on + strand, within CSW01_16395 at 398.080 kb on - strand at 398.311 kb on + strand, within CSW01_16405 at 398.326 kb on - strand, within CSW01_16405 at 398.336 kb on - strand, within CSW01_16405 at 398.336 kb on - strand, within CSW01_16405 at 398.390 kb on + strand, within CSW01_16405 at 398.499 kb on + strand at 398.507 kb on - strand at 398.611 kb on + strand, within CSW01_16410 at 398.634 kb on + strand, within CSW01_16410 at 398.642 kb on - strand, within CSW01_16410 at 398.644 kb on + strand, within CSW01_16410 at 398.644 kb on + strand, within CSW01_16410 at 398.644 kb on - strand, within CSW01_16410 at 398.649 kb on + strand, within CSW01_16410 at 398.652 kb on - strand, within CSW01_16410 at 398.652 kb on - strand, within CSW01_16410 at 398.657 kb on - strand, within CSW01_16410 at 398.657 kb on - strand, within CSW01_16410 at 398.668 kb on - strand, within CSW01_16410 at 398.706 kb on + strand, within CSW01_16410 at 398.763 kb on + strand, within CSW01_16410 at 398.771 kb on - strand, within CSW01_16410 at 398.771 kb on - strand, within CSW01_16410 at 398.785 kb on + strand, within CSW01_16410 at 398.785 kb on + strand, within CSW01_16410 at 398.785 kb on + strand, within CSW01_16410 at 398.785 kb on + strand, within CSW01_16410 at 398.786 kb on + strand, within CSW01_16410 at 398.793 kb on - strand, within CSW01_16410 at 398.793 kb on - strand, within CSW01_16410 at 398.794 kb on - strand, within CSW01_16410 at 398.795 kb on - strand, within CSW01_16410 at 398.795 kb on - strand, within CSW01_16410 at 398.901 kb on - strand, within CSW01_16410 at 398.919 kb on - strand, within CSW01_16410 at 398.994 kb on + strand, within CSW01_16410 at 399.002 kb on - strand, within CSW01_16410 at 399.029 kb on + strand, within CSW01_16410 at 399.179 kb on + strand at 399.203 kb on - strand at 399.241 kb on - strand at 399.290 kb on + strand at 399.330 kb on + strand at 399.330 kb on + strand at 399.338 kb on - strand at 399.355 kb on - strand at 399.355 kb on - strand at 400.137 kb on - strand at 400.161 kb on + strand, within CSW01_16420 at 400.179 kb on - strand, within CSW01_16420
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A remove 397,628 + CSW01_16395 0.52 +0.4 398,080 - -1.0 398,311 + CSW01_16405 0.21 -0.3 398,326 - CSW01_16405 0.29 +1.0 398,336 - CSW01_16405 0.34 +0.1 398,336 - CSW01_16405 0.34 +0.5 398,390 + CSW01_16405 0.62 -0.3 398,499 + +0.2 398,507 - -0.3 398,611 + CSW01_16410 0.11 -0.2 398,634 + CSW01_16410 0.14 +1.0 398,642 - CSW01_16410 0.15 +1.0 398,644 + CSW01_16410 0.15 +0.1 398,644 + CSW01_16410 0.15 -0.2 398,644 - CSW01_16410 0.15 -0.8 398,649 + CSW01_16410 0.16 +0.3 398,652 - CSW01_16410 0.17 +0.3 398,652 - CSW01_16410 0.17 -0.1 398,657 - CSW01_16410 0.17 +0.4 398,657 - CSW01_16410 0.17 -0.4 398,668 - CSW01_16410 0.19 -1.4 398,706 + CSW01_16410 0.24 +0.7 398,763 + CSW01_16410 0.33 +0.5 398,771 - CSW01_16410 0.34 -0.2 398,771 - CSW01_16410 0.34 -0.6 398,785 + CSW01_16410 0.36 +1.2 398,785 + CSW01_16410 0.36 -0.5 398,785 + CSW01_16410 0.36 -0.8 398,785 + CSW01_16410 0.36 +0.3 398,786 + CSW01_16410 0.36 +0.3 398,793 - CSW01_16410 0.37 +0.4 398,793 - CSW01_16410 0.37 -0.8 398,794 - CSW01_16410 0.37 -0.0 398,795 - CSW01_16410 0.37 -0.6 398,795 - CSW01_16410 0.37 -0.4 398,901 - CSW01_16410 0.53 -0.9 398,919 - CSW01_16410 0.55 +0.4 398,994 + CSW01_16410 0.66 -0.4 399,002 - CSW01_16410 0.67 -0.5 399,029 + CSW01_16410 0.71 +1.3 399,179 + -1.1 399,203 - -1.4 399,241 - -0.1 399,290 + +0.5 399,330 + -1.4 399,330 + +0.5 399,338 - +0.1 399,355 - -0.2 399,355 - -0.1 400,137 - +0.3 400,161 + CSW01_16420 0.13 +0.2 400,179 - CSW01_16420 0.18 -0.8
Or see this region's nucleotide sequence