Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15270

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_15260 and CSW01_15265 are separated by 105 nucleotidesCSW01_15265 and CSW01_15270 are separated by 10 nucleotidesCSW01_15270 and CSW01_15275 are separated by 183 nucleotidesCSW01_15275 and CSW01_15280 are separated by 59 nucleotides CSW01_15260: CSW01_15260 - hypothetical protein, at 279,423 to 279,833 _15260 CSW01_15265: CSW01_15265 - N-acetyltransferase, at 279,939 to 280,481 _15265 CSW01_15270: CSW01_15270 - transcriptional regulator, at 280,492 to 281,670 _15270 CSW01_15275: CSW01_15275 - hypothetical protein, at 281,854 to 282,234 _15275 CSW01_15280: CSW01_15280 - AraC family transcriptional regulator, at 282,294 to 283,067 _15280 Position (kb) 280 281 282Strain fitness (log2 ratio) -2 -1 0 1 2at 279.514 kb on - strand, within CSW01_15260at 279.608 kb on + strand, within CSW01_15260at 279.608 kb on + strand, within CSW01_15260at 279.608 kb on + strand, within CSW01_15260at 279.609 kb on - strand, within CSW01_15260at 279.623 kb on + strand, within CSW01_15260at 279.630 kb on + strand, within CSW01_15260at 279.749 kb on - strand, within CSW01_15260at 279.749 kb on - strand, within CSW01_15260at 279.790 kb on - strand, within CSW01_15260at 279.792 kb on + strand, within CSW01_15260at 279.805 kb on - strandat 279.919 kb on - strandat 279.966 kb on - strandat 280.050 kb on + strand, within CSW01_15265at 280.050 kb on + strand, within CSW01_15265at 280.133 kb on - strand, within CSW01_15265at 280.138 kb on - strand, within CSW01_15265at 280.176 kb on + strand, within CSW01_15265at 280.176 kb on + strand, within CSW01_15265at 280.176 kb on + strand, within CSW01_15265at 280.184 kb on - strand, within CSW01_15265at 280.194 kb on + strand, within CSW01_15265at 280.216 kb on + strand, within CSW01_15265at 280.402 kb on - strand, within CSW01_15265at 280.516 kb on + strandat 280.574 kb on + strandat 280.643 kb on - strand, within CSW01_15270at 280.667 kb on - strand, within CSW01_15270at 280.799 kb on - strand, within CSW01_15270at 280.821 kb on + strand, within CSW01_15270at 280.862 kb on - strand, within CSW01_15270at 280.874 kb on + strand, within CSW01_15270at 280.906 kb on - strand, within CSW01_15270at 280.963 kb on + strand, within CSW01_15270at 280.984 kb on + strand, within CSW01_15270at 280.984 kb on + strand, within CSW01_15270at 280.992 kb on - strand, within CSW01_15270at 280.995 kb on + strand, within CSW01_15270at 281.036 kb on + strand, within CSW01_15270at 281.036 kb on + strand, within CSW01_15270at 281.044 kb on - strand, within CSW01_15270at 281.163 kb on - strand, within CSW01_15270at 281.163 kb on - strand, within CSW01_15270at 281.173 kb on - strand, within CSW01_15270at 281.179 kb on + strand, within CSW01_15270at 281.179 kb on + strand, within CSW01_15270at 281.279 kb on + strand, within CSW01_15270at 281.314 kb on - strand, within CSW01_15270at 281.322 kb on + strand, within CSW01_15270at 281.332 kb on - strand, within CSW01_15270at 281.341 kb on + strand, within CSW01_15270at 281.341 kb on + strand, within CSW01_15270at 281.349 kb on - strand, within CSW01_15270at 281.436 kb on - strand, within CSW01_15270at 281.436 kb on - strand, within CSW01_15270at 281.487 kb on + strand, within CSW01_15270at 281.487 kb on + strand, within CSW01_15270at 281.487 kb on + strand, within CSW01_15270at 281.495 kb on - strand, within CSW01_15270at 281.495 kb on - strand, within CSW01_15270at 281.495 kb on - strand, within CSW01_15270at 281.507 kb on + strand, within CSW01_15270at 281.507 kb on + strand, within CSW01_15270at 281.507 kb on + strand, within CSW01_15270at 281.507 kb on - strand, within CSW01_15270at 281.549 kb on - strand, within CSW01_15270at 281.590 kb on + strandat 281.609 kb on + strandat 281.609 kb on + strandat 281.617 kb on - strandat 281.619 kb on + strandat 281.632 kb on - strandat 281.642 kb on - strandat 281.706 kb on + strandat 281.719 kb on - strandat 281.721 kb on + strandat 281.721 kb on + strandat 281.721 kb on + strandat 281.721 kb on + strandat 281.722 kb on - strandat 281.729 kb on - strandat 281.729 kb on - strandat 281.729 kb on - strandat 281.844 kb on + strandat 281.886 kb on + strandat 281.931 kb on - strand, within CSW01_15275at 281.931 kb on - strand, within CSW01_15275at 281.931 kb on - strand, within CSW01_15275at 281.986 kb on + strand, within CSW01_15275at 281.991 kb on + strand, within CSW01_15275at 281.991 kb on + strand, within CSW01_15275at 281.991 kb on + strand, within CSW01_15275at 281.991 kb on + strand, within CSW01_15275at 281.999 kb on - strand, within CSW01_15275at 281.999 kb on - strand, within CSW01_15275at 282.167 kb on + strand, within CSW01_15275at 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.523 kb on + strand, within CSW01_15280at 282.537 kb on - strand, within CSW01_15280at 282.644 kb on - strand, within CSW01_15280at 282.654 kb on - strand, within CSW01_15280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
remove
279,514 - CSW01_15260 0.22 +2.4
279,608 + CSW01_15260 0.45 -1.2
279,608 + CSW01_15260 0.45 -0.9
279,608 + CSW01_15260 0.45 +0.3
279,609 - CSW01_15260 0.45 -0.3
279,623 + CSW01_15260 0.49 +0.2
279,630 + CSW01_15260 0.50 +0.6
279,749 - CSW01_15260 0.79 -1.4
279,749 - CSW01_15260 0.79 -0.1
279,790 - CSW01_15260 0.89 -0.3
279,792 + CSW01_15260 0.90 +0.2
279,805 - -0.4
279,919 - +0.4
279,966 - +0.4
280,050 + CSW01_15265 0.20 -0.2
280,050 + CSW01_15265 0.20 +0.1
280,133 - CSW01_15265 0.36 -0.4
280,138 - CSW01_15265 0.37 +0.3
280,176 + CSW01_15265 0.44 +0.5
280,176 + CSW01_15265 0.44 +0.9
280,176 + CSW01_15265 0.44 -0.7
280,184 - CSW01_15265 0.45 +0.7
280,194 + CSW01_15265 0.47 +0.9
280,216 + CSW01_15265 0.51 +1.4
280,402 - CSW01_15265 0.85 +0.2
280,516 + +1.1
280,574 + +0.1
280,643 - CSW01_15270 0.13 -0.8
280,667 - CSW01_15270 0.15 +0.1
280,799 - CSW01_15270 0.26 -0.1
280,821 + CSW01_15270 0.28 +0.3
280,862 - CSW01_15270 0.31 +0.1
280,874 + CSW01_15270 0.32 +0.1
280,906 - CSW01_15270 0.35 +0.3
280,963 + CSW01_15270 0.40 +1.2
280,984 + CSW01_15270 0.42 -0.8
280,984 + CSW01_15270 0.42 -1.0
280,992 - CSW01_15270 0.42 +0.2
280,995 + CSW01_15270 0.43 +0.6
281,036 + CSW01_15270 0.46 +1.7
281,036 + CSW01_15270 0.46 -0.1
281,044 - CSW01_15270 0.47 +0.2
281,163 - CSW01_15270 0.57 +2.5
281,163 - CSW01_15270 0.57 +0.1
281,173 - CSW01_15270 0.58 +1.5
281,179 + CSW01_15270 0.58 -0.1
281,179 + CSW01_15270 0.58 +1.3
281,279 + CSW01_15270 0.67 -0.3
281,314 - CSW01_15270 0.70 -1.3
281,322 + CSW01_15270 0.70 +0.1
281,332 - CSW01_15270 0.71 +0.1
281,341 + CSW01_15270 0.72 +0.8
281,341 + CSW01_15270 0.72 +0.4
281,349 - CSW01_15270 0.73 -0.2
281,436 - CSW01_15270 0.80 -0.1
281,436 - CSW01_15270 0.80 -0.2
281,487 + CSW01_15270 0.84 -0.1
281,487 + CSW01_15270 0.84 -0.1
281,487 + CSW01_15270 0.84 -0.3
281,495 - CSW01_15270 0.85 -0.9
281,495 - CSW01_15270 0.85 +0.4
281,495 - CSW01_15270 0.85 +0.2
281,507 + CSW01_15270 0.86 -0.2
281,507 + CSW01_15270 0.86 -0.4
281,507 + CSW01_15270 0.86 -1.7
281,507 - CSW01_15270 0.86 +0.5
281,549 - CSW01_15270 0.90 +1.4
281,590 + -1.3
281,609 + +0.8
281,609 + -0.5
281,617 - +0.8
281,619 + -0.0
281,632 - -0.5
281,642 - -1.2
281,706 + -2.5
281,719 - +0.7
281,721 + -0.4
281,721 + -0.9
281,721 + -0.9
281,721 + -0.3
281,722 - +0.6
281,729 - +0.6
281,729 - +0.3
281,729 - +0.8
281,844 + +0.4
281,886 + -0.0
281,931 - CSW01_15275 0.20 +1.0
281,931 - CSW01_15275 0.20 -0.2
281,931 - CSW01_15275 0.20 -0.4
281,986 + CSW01_15275 0.35 -0.2
281,991 + CSW01_15275 0.36 -1.0
281,991 + CSW01_15275 0.36 -1.2
281,991 + CSW01_15275 0.36 +0.0
281,991 + CSW01_15275 0.36 +1.1
281,999 - CSW01_15275 0.38 +0.2
281,999 - CSW01_15275 0.38 -0.5
282,167 + CSW01_15275 0.82 +0.1
282,315 + +0.5
282,315 + +1.0
282,315 + +1.3
282,315 + +0.2
282,315 + -0.7
282,315 + +0.4
282,315 + -0.6
282,315 + +0.2
282,323 - +0.2
282,323 - -0.2
282,323 - +0.8
282,323 - -0.3
282,323 - +0.3
282,523 + CSW01_15280 0.30 +0.2
282,537 - CSW01_15280 0.31 -1.4
282,644 - CSW01_15280 0.45 -0.1
282,654 - CSW01_15280 0.47 -0.3

Or see this region's nucleotide sequence