Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14750

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14745 and CSW01_14750 are separated by 147 nucleotidesCSW01_14750 and CSW01_14755 are separated by 128 nucleotides CSW01_14745: CSW01_14745 - peptidase M66, at 164,093 to 167,836 _14745 CSW01_14750: CSW01_14750 - peptide deformylase, at 167,984 to 168,490 _14750 CSW01_14755: CSW01_14755 - oxidoreductase, at 168,619 to 169,971 _14755 Position (kb) 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 166.989 kb on - strand, within CSW01_14745at 167.120 kb on + strand, within CSW01_14745at 167.140 kb on + strand, within CSW01_14745at 167.169 kb on + strand, within CSW01_14745at 167.177 kb on - strand, within CSW01_14745at 167.192 kb on - strand, within CSW01_14745at 167.251 kb on + strand, within CSW01_14745at 167.269 kb on - strand, within CSW01_14745at 167.321 kb on + strand, within CSW01_14745at 167.339 kb on - strand, within CSW01_14745at 167.341 kb on + strand, within CSW01_14745at 167.385 kb on + strand, within CSW01_14745at 167.393 kb on - strand, within CSW01_14745at 167.432 kb on - strand, within CSW01_14745at 167.464 kb on - strandat 167.470 kb on + strandat 167.569 kb on - strandat 167.585 kb on - strandat 167.592 kb on + strandat 167.600 kb on - strandat 167.617 kb on + strandat 167.630 kb on - strandat 167.638 kb on + strandat 167.674 kb on + strandat 167.679 kb on + strandat 167.679 kb on + strandat 167.679 kb on + strandat 167.679 kb on + strandat 167.687 kb on - strandat 167.687 kb on - strandat 167.687 kb on - strandat 167.697 kb on - strandat 167.730 kb on - strandat 167.812 kb on - strandat 167.921 kb on - strandat 167.946 kb on - strandat 167.946 kb on - strandat 167.980 kb on + strandat 168.015 kb on + strandat 168.043 kb on + strand, within CSW01_14750at 168.051 kb on - strand, within CSW01_14750at 168.051 kb on - strand, within CSW01_14750at 168.058 kb on - strand, within CSW01_14750at 168.062 kb on + strand, within CSW01_14750at 168.077 kb on - strand, within CSW01_14750at 168.085 kb on + strand, within CSW01_14750at 168.085 kb on + strand, within CSW01_14750at 168.085 kb on + strand, within CSW01_14750at 168.093 kb on - strand, within CSW01_14750at 168.093 kb on - strand, within CSW01_14750at 168.097 kb on + strand, within CSW01_14750at 168.188 kb on - strand, within CSW01_14750at 168.197 kb on + strand, within CSW01_14750at 168.281 kb on + strand, within CSW01_14750at 168.289 kb on + strand, within CSW01_14750at 168.289 kb on + strand, within CSW01_14750at 168.289 kb on + strand, within CSW01_14750at 168.289 kb on - strand, within CSW01_14750at 168.297 kb on - strand, within CSW01_14750at 168.297 kb on - strand, within CSW01_14750at 168.328 kb on + strand, within CSW01_14750at 168.328 kb on + strand, within CSW01_14750at 168.336 kb on - strand, within CSW01_14750at 168.336 kb on - strand, within CSW01_14750at 168.489 kb on + strandat 168.647 kb on + strandat 168.647 kb on + strandat 168.655 kb on - strandat 168.673 kb on - strandat 168.673 kb on - strandat 168.690 kb on + strandat 168.698 kb on - strandat 168.698 kb on - strandat 168.704 kb on - strandat 168.710 kb on - strandat 168.725 kb on - strandat 168.778 kb on - strand, within CSW01_14755at 168.813 kb on - strand, within CSW01_14755at 168.816 kb on + strand, within CSW01_14755at 168.827 kb on + strand, within CSW01_14755at 168.860 kb on - strand, within CSW01_14755at 168.959 kb on - strand, within CSW01_14755at 169.049 kb on - strand, within CSW01_14755at 169.185 kb on - strand, within CSW01_14755at 169.185 kb on - strand, within CSW01_14755at 169.195 kb on - strand, within CSW01_14755at 169.247 kb on + strand, within CSW01_14755at 169.260 kb on + strand, within CSW01_14755at 169.268 kb on - strand, within CSW01_14755at 169.366 kb on - strand, within CSW01_14755at 169.386 kb on + strand, within CSW01_14755at 169.386 kb on + strand, within CSW01_14755at 169.386 kb on + strand, within CSW01_14755at 169.394 kb on - strand, within CSW01_14755at 169.394 kb on - strand, within CSW01_14755at 169.394 kb on - strand, within CSW01_14755at 169.404 kb on - strand, within CSW01_14755at 169.411 kb on - strand, within CSW01_14755at 169.479 kb on - strand, within CSW01_14755

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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166,989 - CSW01_14745 0.77 -0.0
167,120 + CSW01_14745 0.81 -0.1
167,140 + CSW01_14745 0.81 -0.2
167,169 + CSW01_14745 0.82 +0.2
167,177 - CSW01_14745 0.82 +0.2
167,192 - CSW01_14745 0.83 -0.1
167,251 + CSW01_14745 0.84 +1.9
167,269 - CSW01_14745 0.85 +2.1
167,321 + CSW01_14745 0.86 -2.7
167,339 - CSW01_14745 0.87 -0.3
167,341 + CSW01_14745 0.87 -0.1
167,385 + CSW01_14745 0.88 -0.2
167,393 - CSW01_14745 0.88 +0.1
167,432 - CSW01_14745 0.89 +3.3
167,464 - +0.1
167,470 + -0.3
167,569 - +1.6
167,585 - +1.0
167,592 + -1.5
167,600 - -0.1
167,617 + -0.6
167,630 - -0.3
167,638 + -0.3
167,674 + -3.3
167,679 + +2.2
167,679 + -1.1
167,679 + +0.5
167,679 + -0.4
167,687 - +0.2
167,687 - -0.7
167,687 - -0.9
167,697 - +0.4
167,730 - -0.1
167,812 - +0.1
167,921 - -0.1
167,946 - +1.3
167,946 - -0.8
167,980 + +0.1
168,015 + +2.3
168,043 + CSW01_14750 0.12 +1.4
168,051 - CSW01_14750 0.13 +0.1
168,051 - CSW01_14750 0.13 -0.2
168,058 - CSW01_14750 0.15 -0.3
168,062 + CSW01_14750 0.15 +0.5
168,077 - CSW01_14750 0.18 +0.0
168,085 + CSW01_14750 0.20 +1.6
168,085 + CSW01_14750 0.20 -0.9
168,085 + CSW01_14750 0.20 +0.3
168,093 - CSW01_14750 0.21 +0.6
168,093 - CSW01_14750 0.21 +0.1
168,097 + CSW01_14750 0.22 -0.9
168,188 - CSW01_14750 0.40 +0.6
168,197 + CSW01_14750 0.42 -0.4
168,281 + CSW01_14750 0.59 +0.0
168,289 + CSW01_14750 0.60 -0.8
168,289 + CSW01_14750 0.60 +2.7
168,289 + CSW01_14750 0.60 -0.4
168,289 - CSW01_14750 0.60 -0.8
168,297 - CSW01_14750 0.62 +0.8
168,297 - CSW01_14750 0.62 +0.5
168,328 + CSW01_14750 0.68 +0.6
168,328 + CSW01_14750 0.68 +0.3
168,336 - CSW01_14750 0.69 -0.1
168,336 - CSW01_14750 0.69 -0.2
168,489 + -0.3
168,647 + -0.5
168,647 + -0.5
168,655 - -0.2
168,673 - -0.1
168,673 - +0.1
168,690 + -0.2
168,698 - -0.0
168,698 - +0.3
168,704 - +0.3
168,710 - -0.0
168,725 - -0.1
168,778 - CSW01_14755 0.12 -0.4
168,813 - CSW01_14755 0.14 -0.5
168,816 + CSW01_14755 0.15 +2.8
168,827 + CSW01_14755 0.15 +0.2
168,860 - CSW01_14755 0.18 +0.2
168,959 - CSW01_14755 0.25 -0.0
169,049 - CSW01_14755 0.32 -0.5
169,185 - CSW01_14755 0.42 -1.1
169,185 - CSW01_14755 0.42 +0.5
169,195 - CSW01_14755 0.43 +0.3
169,247 + CSW01_14755 0.46 -0.1
169,260 + CSW01_14755 0.47 -0.6
169,268 - CSW01_14755 0.48 -0.3
169,366 - CSW01_14755 0.55 -1.7
169,386 + CSW01_14755 0.57 +1.1
169,386 + CSW01_14755 0.57 -0.2
169,386 + CSW01_14755 0.57 -0.5
169,394 - CSW01_14755 0.57 -0.8
169,394 - CSW01_14755 0.57 +0.3
169,394 - CSW01_14755 0.57 +0.2
169,404 - CSW01_14755 0.58 -0.5
169,411 - CSW01_14755 0.59 -1.0
169,479 - CSW01_14755 0.64 -0.9

Or see this region's nucleotide sequence