Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14715

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14710 and CSW01_14715 are separated by 114 nucleotidesCSW01_14715 and CSW01_14720 are separated by 289 nucleotides CSW01_14710: CSW01_14710 - Spindolin, at 153,869 to 155,077 _14710 CSW01_14715: CSW01_14715 - sensor histidine kinase, at 155,192 to 157,246 _14715 CSW01_14720: CSW01_14720 - sigma-54-dependent Fis family transcriptional regulator, at 157,536 to 158,888 _14720 Position (kb) 155 156 157 158Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 154.357 kb on + strand, within CSW01_14710at 154.375 kb on + strand, within CSW01_14710at 154.468 kb on + strand, within CSW01_14710at 154.506 kb on + strand, within CSW01_14710at 154.563 kb on + strand, within CSW01_14710at 154.563 kb on + strand, within CSW01_14710at 154.581 kb on + strand, within CSW01_14710at 154.609 kb on - strand, within CSW01_14710at 154.638 kb on + strand, within CSW01_14710at 154.645 kb on - strand, within CSW01_14710at 154.646 kb on - strand, within CSW01_14710at 154.646 kb on - strand, within CSW01_14710at 154.646 kb on - strand, within CSW01_14710at 154.649 kb on + strand, within CSW01_14710at 154.657 kb on - strand, within CSW01_14710at 154.657 kb on - strand, within CSW01_14710at 154.673 kb on - strand, within CSW01_14710at 154.688 kb on - strand, within CSW01_14710at 154.688 kb on - strand, within CSW01_14710at 154.766 kb on + strand, within CSW01_14710at 154.870 kb on - strand, within CSW01_14710at 154.870 kb on - strand, within CSW01_14710at 154.882 kb on + strand, within CSW01_14710at 154.909 kb on + strand, within CSW01_14710at 154.915 kb on + strand, within CSW01_14710at 154.966 kb on + strandat 154.968 kb on - strandat 154.974 kb on - strandat 155.005 kb on + strandat 155.010 kb on + strandat 155.013 kb on - strandat 155.013 kb on - strandat 155.015 kb on + strandat 155.033 kb on + strandat 155.049 kb on + strandat 155.049 kb on - strandat 155.064 kb on - strandat 155.157 kb on - strandat 155.259 kb on - strandat 155.262 kb on - strandat 155.305 kb on + strandat 155.305 kb on + strandat 155.305 kb on + strandat 155.306 kb on + strandat 155.306 kb on + strandat 155.306 kb on + strandat 155.308 kb on - strandat 155.314 kb on - strandat 155.341 kb on - strandat 155.343 kb on + strandat 155.416 kb on - strand, within CSW01_14715at 155.452 kb on - strand, within CSW01_14715at 155.456 kb on + strand, within CSW01_14715at 155.457 kb on - strand, within CSW01_14715at 155.457 kb on - strand, within CSW01_14715at 155.521 kb on - strand, within CSW01_14715at 155.606 kb on + strand, within CSW01_14715at 155.643 kb on + strand, within CSW01_14715at 155.727 kb on - strand, within CSW01_14715at 155.770 kb on - strand, within CSW01_14715at 155.779 kb on + strand, within CSW01_14715at 155.787 kb on - strand, within CSW01_14715at 155.799 kb on + strand, within CSW01_14715at 155.889 kb on + strand, within CSW01_14715at 155.897 kb on - strand, within CSW01_14715at 155.899 kb on - strand, within CSW01_14715at 155.911 kb on + strand, within CSW01_14715at 155.911 kb on + strand, within CSW01_14715at 155.911 kb on + strand, within CSW01_14715at 155.919 kb on - strand, within CSW01_14715at 155.919 kb on - strand, within CSW01_14715at 156.013 kb on + strand, within CSW01_14715at 156.013 kb on + strand, within CSW01_14715at 156.021 kb on - strand, within CSW01_14715at 156.021 kb on - strand, within CSW01_14715at 156.038 kb on + strand, within CSW01_14715at 156.046 kb on - strand, within CSW01_14715at 156.081 kb on - strand, within CSW01_14715at 156.206 kb on + strand, within CSW01_14715at 156.214 kb on + strand, within CSW01_14715at 156.286 kb on + strand, within CSW01_14715at 156.421 kb on + strand, within CSW01_14715at 156.440 kb on - strand, within CSW01_14715at 156.477 kb on + strand, within CSW01_14715at 156.485 kb on - strand, within CSW01_14715at 156.497 kb on - strand, within CSW01_14715at 156.523 kb on - strand, within CSW01_14715at 156.551 kb on - strand, within CSW01_14715at 156.553 kb on + strand, within CSW01_14715at 156.561 kb on - strand, within CSW01_14715at 156.633 kb on - strand, within CSW01_14715at 156.724 kb on + strand, within CSW01_14715at 156.871 kb on - strand, within CSW01_14715at 156.944 kb on + strand, within CSW01_14715at 156.951 kb on + strand, within CSW01_14715at 157.020 kb on + strand, within CSW01_14715at 157.028 kb on - strand, within CSW01_14715at 157.081 kb on + strandat 157.082 kb on + strandat 157.093 kb on + strandat 157.141 kb on + strandat 157.144 kb on - strandat 157.190 kb on - strandat 157.190 kb on - strandat 157.290 kb on - strandat 157.326 kb on + strandat 157.326 kb on + strandat 157.334 kb on - strandat 157.342 kb on - strandat 157.412 kb on - strandat 157.567 kb on - strandat 157.673 kb on + strand, within CSW01_14720at 157.701 kb on - strand, within CSW01_14720at 157.704 kb on - strand, within CSW01_14720at 157.704 kb on - strand, within CSW01_14720at 157.714 kb on - strand, within CSW01_14720at 157.876 kb on - strand, within CSW01_14720at 157.894 kb on + strand, within CSW01_14720at 157.906 kb on - strand, within CSW01_14720at 157.915 kb on + strand, within CSW01_14720at 157.954 kb on + strand, within CSW01_14720at 157.979 kb on + strand, within CSW01_14720at 157.987 kb on - strand, within CSW01_14720at 158.123 kb on + strand, within CSW01_14720at 158.177 kb on + strand, within CSW01_14720at 158.221 kb on + strand, within CSW01_14720at 158.238 kb on - strand, within CSW01_14720

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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154,357 + CSW01_14710 0.40 -0.2
154,375 + CSW01_14710 0.42 -0.3
154,468 + CSW01_14710 0.50 +0.6
154,506 + CSW01_14710 0.53 -0.9
154,563 + CSW01_14710 0.57 +0.7
154,563 + CSW01_14710 0.57 +0.5
154,581 + CSW01_14710 0.59 +0.4
154,609 - CSW01_14710 0.61 +1.4
154,638 + CSW01_14710 0.64 +0.8
154,645 - CSW01_14710 0.64 +0.5
154,646 - CSW01_14710 0.64 -0.5
154,646 - CSW01_14710 0.64 -0.3
154,646 - CSW01_14710 0.64 +0.3
154,649 + CSW01_14710 0.65 -1.7
154,657 - CSW01_14710 0.65 -1.2
154,657 - CSW01_14710 0.65 +0.3
154,673 - CSW01_14710 0.67 -0.0
154,688 - CSW01_14710 0.68 -0.5
154,688 - CSW01_14710 0.68 +0.3
154,766 + CSW01_14710 0.74 -1.1
154,870 - CSW01_14710 0.83 -1.5
154,870 - CSW01_14710 0.83 +1.3
154,882 + CSW01_14710 0.84 +0.3
154,909 + CSW01_14710 0.86 +0.4
154,915 + CSW01_14710 0.87 -0.2
154,966 + -0.8
154,968 - -0.4
154,974 - -1.2
155,005 + +0.1
155,010 + -0.3
155,013 - -0.2
155,013 - +1.4
155,015 + -0.5
155,033 + +1.7
155,049 + -0.7
155,049 - +1.5
155,064 - +0.8
155,157 - +0.1
155,259 - -0.9
155,262 - -0.3
155,305 + -0.3
155,305 + -0.3
155,305 + +0.1
155,306 + +0.9
155,306 + +0.0
155,306 + -0.3
155,308 - -0.1
155,314 - +0.6
155,341 - +0.3
155,343 + -0.1
155,416 - CSW01_14715 0.11 +3.7
155,452 - CSW01_14715 0.13 -0.3
155,456 + CSW01_14715 0.13 +0.4
155,457 - CSW01_14715 0.13 -0.6
155,457 - CSW01_14715 0.13 -0.3
155,521 - CSW01_14715 0.16 -0.7
155,606 + CSW01_14715 0.20 -0.4
155,643 + CSW01_14715 0.22 +0.7
155,727 - CSW01_14715 0.26 -0.2
155,770 - CSW01_14715 0.28 -0.3
155,779 + CSW01_14715 0.29 +0.1
155,787 - CSW01_14715 0.29 +0.9
155,799 + CSW01_14715 0.30 +0.3
155,889 + CSW01_14715 0.34 -0.4
155,897 - CSW01_14715 0.34 -0.4
155,899 - CSW01_14715 0.34 +0.5
155,911 + CSW01_14715 0.35 -0.4
155,911 + CSW01_14715 0.35 +1.4
155,911 + CSW01_14715 0.35 +0.1
155,919 - CSW01_14715 0.35 -0.8
155,919 - CSW01_14715 0.35 -0.4
156,013 + CSW01_14715 0.40 +0.7
156,013 + CSW01_14715 0.40 +0.2
156,021 - CSW01_14715 0.40 -0.8
156,021 - CSW01_14715 0.40 -0.7
156,038 + CSW01_14715 0.41 +0.3
156,046 - CSW01_14715 0.42 -0.0
156,081 - CSW01_14715 0.43 -0.4
156,206 + CSW01_14715 0.49 -0.0
156,214 + CSW01_14715 0.50 -0.8
156,286 + CSW01_14715 0.53 -0.9
156,421 + CSW01_14715 0.60 +0.5
156,440 - CSW01_14715 0.61 -0.2
156,477 + CSW01_14715 0.63 -0.0
156,485 - CSW01_14715 0.63 +0.8
156,497 - CSW01_14715 0.64 -0.2
156,523 - CSW01_14715 0.65 +0.4
156,551 - CSW01_14715 0.66 +0.4
156,553 + CSW01_14715 0.66 -0.3
156,561 - CSW01_14715 0.67 -0.2
156,633 - CSW01_14715 0.70 -0.8
156,724 + CSW01_14715 0.75 -0.9
156,871 - CSW01_14715 0.82 -0.0
156,944 + CSW01_14715 0.85 -0.4
156,951 + CSW01_14715 0.86 +1.1
157,020 + CSW01_14715 0.89 +1.3
157,028 - CSW01_14715 0.89 +0.8
157,081 + +0.6
157,082 + +1.7
157,093 + +0.2
157,141 + +0.1
157,144 - -0.7
157,190 - +0.2
157,190 - -0.4
157,290 - +1.1
157,326 + +0.3
157,326 + -0.3
157,334 - -0.2
157,342 - +1.6
157,412 - +0.2
157,567 - -2.3
157,673 + CSW01_14720 0.10 +0.2
157,701 - CSW01_14720 0.12 -1.4
157,704 - CSW01_14720 0.12 -0.4
157,704 - CSW01_14720 0.12 -0.3
157,714 - CSW01_14720 0.13 +0.4
157,876 - CSW01_14720 0.25 +0.1
157,894 + CSW01_14720 0.26 +2.0
157,906 - CSW01_14720 0.27 -3.3
157,915 + CSW01_14720 0.28 -1.0
157,954 + CSW01_14720 0.31 +0.0
157,979 + CSW01_14720 0.33 +0.2
157,987 - CSW01_14720 0.33 +0.0
158,123 + CSW01_14720 0.43 +0.1
158,177 + CSW01_14720 0.47 -2.7
158,221 + CSW01_14720 0.51 -1.0
158,238 - CSW01_14720 0.52 +0.4

Or see this region's nucleotide sequence