Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13655

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
2,907,535	-		CSW01_13645	0.81	-0.1
2,907,563	+		CSW01_13645	0.83	+0.1
2,907,578	-		CSW01_13645	0.83	-0.4
2,907,620	+		CSW01_13645	0.86	-0.3
2,907,708	+				+0.2
2,907,721	-				+1.0
2,907,726	-				+0.2
2,907,730	+				-0.4
2,907,746	-				-0.1
2,907,746	-				+0.3
2,907,793	+				+0.0
2,907,793	+				+0.2
2,907,793	+				+0.3
2,907,793	+				+0.9
2,907,801	-				+0.0
2,907,801	-				+0.9
2,907,813	-				+0.3
2,907,819	+				+0.1
2,907,870	+				+0.2
2,907,870	+				+0.3
2,907,893	-				+1.5
2,907,921	-				-0.8
2,907,997	+				+0.6
2,908,022	+				-0.0
2,908,049	-				+0.5
2,908,100	+				+0.1
2,908,100	+				+0.3
2,908,108	-				+0.1
2,908,108	-				+0.4
2,908,181	+				+0.2
2,908,277	-		CSW01_13650	0.12	-0.2
2,908,277	-		CSW01_13650	0.12	+0.3
2,908,322	+		CSW01_13650	0.29	+0.0
2,908,336	+		CSW01_13650	0.34	-0.5
2,908,391	+		CSW01_13650	0.55	-1.5
2,908,428	+		CSW01_13650	0.69	+0.3
2,908,506	+				+0.1
2,908,526	-				-0.9
2,908,562	+				+1.1
2,908,580	-				-0.2
2,908,603	+				+1.3
2,908,617	+				+0.5
2,908,636	+				+0.6
2,908,636	+				-0.0
2,908,636	+				-0.7
2,908,636	+				-0.4
2,908,636	+				-0.3
2,908,636	+				+0.1
2,908,636	+				-0.1
2,908,636	+				-0.3
2,908,636	+				+0.4
2,908,636	+				-1.0
2,908,636	+				+0.2
2,908,637	+				+0.4
2,908,642	-				-2.9
2,908,644	-				+0.3
2,908,644	-				+0.1
2,908,644	-				-0.4
2,908,644	-				+0.4
2,908,644	-				+0.3
2,908,644	-				-0.5
2,908,644	-				+0.5
2,908,645	-				+0.3
2,908,730	+		CSW01_13655	0.12	-1.8
2,908,742	+		CSW01_13655	0.13	-0.0
2,908,755	+		CSW01_13655	0.14	-0.0
2,908,763	-		CSW01_13655	0.14	-0.1
2,908,769	+		CSW01_13655	0.14	-0.1
2,908,769	+		CSW01_13655	0.14	+0.1
2,908,769	+		CSW01_13655	0.14	+0.1
2,908,769	+		CSW01_13655	0.14	-0.2
2,908,769	+		CSW01_13655	0.14	-0.3
2,908,777	-		CSW01_13655	0.15	-0.3
2,908,777	-		CSW01_13655	0.15	-0.4
2,908,777	-		CSW01_13655	0.15	-0.8
2,908,777	-		CSW01_13655	0.15	+0.3
2,908,783	+		CSW01_13655	0.15	+0.5
2,908,804	-		CSW01_13655	0.17	-0.5
2,908,857	+		CSW01_13655	0.20	+0.1
2,908,857	+		CSW01_13655	0.20	-1.0
2,908,857	+		CSW01_13655	0.20	-0.4
2,908,857	+		CSW01_13655	0.20	+0.2
2,908,857	+		CSW01_13655	0.20	+2.1
2,908,857	+		CSW01_13655	0.20	-0.7
2,908,857	+		CSW01_13655	0.20	+1.5
2,908,857	+		CSW01_13655	0.20	+0.9
2,908,865	-		CSW01_13655	0.20	+0.2
2,908,865	-		CSW01_13655	0.20	+0.1
2,908,865	-		CSW01_13655	0.20	+0.2
2,908,892	-		CSW01_13655	0.22	-0.8
2,908,918	-		CSW01_13655	0.23	-0.3
2,908,953	-		CSW01_13655	0.25	-0.0
2,908,958	+		CSW01_13655	0.26	+0.2
2,908,958	+		CSW01_13655	0.26	-0.1
2,908,966	-		CSW01_13655	0.26	+0.3
2,908,966	-		CSW01_13655	0.26	+0.3
2,909,028	-		CSW01_13655	0.30	+1.1
2,909,028	-		CSW01_13655	0.30	-1.5
2,909,037	+		CSW01_13655	0.30	-0.1
2,909,038	-		CSW01_13655	0.30	+1.1
2,909,046	-		CSW01_13655	0.31	-0.4
2,909,059	+		CSW01_13655	0.32	-0.6
2,909,059	+		CSW01_13655	0.32	-0.3
2,909,059	+		CSW01_13655	0.32	-0.3
2,909,062	+		CSW01_13655	0.32	+0.0
2,909,066	+		CSW01_13655	0.32	+0.3
2,909,069	+		CSW01_13655	0.32	-0.6
2,909,071	+		CSW01_13655	0.32	-0.0
2,909,071	+		CSW01_13655	0.32	+0.8
2,909,071	+		CSW01_13655	0.32	+0.4
2,909,076	+		CSW01_13655	0.33	-0.4
2,909,079	-		CSW01_13655	0.33	-0.7
2,909,079	-		CSW01_13655	0.33	+0.3
2,909,088	+		CSW01_13655	0.33	-0.2
2,909,115	+		CSW01_13655	0.35	-3.0
2,909,123	-		CSW01_13655	0.35	+0.9
2,909,161	-		CSW01_13655	0.38	+0.2
2,909,207	+		CSW01_13655	0.40	-0.3
2,909,212	+		CSW01_13655	0.40	-0.5
2,909,215	-		CSW01_13655	0.41	+1.3
2,909,215	-		CSW01_13655	0.41	-0.5
2,909,215	-		CSW01_13655	0.41	+0.8
2,909,215	-		CSW01_13655	0.41	-0.0
2,909,220	-		CSW01_13655	0.41	-0.3
2,909,220	-		CSW01_13655	0.41	-0.0
2,909,236	-		CSW01_13655	0.42	+0.3
2,909,247	-		CSW01_13655	0.43	-0.4
2,909,263	+		CSW01_13655	0.43	+0.9
2,909,263	+		CSW01_13655	0.43	+0.2
2,909,278	+		CSW01_13655	0.44	+2.6
2,909,286	+		CSW01_13655	0.45	-0.1
2,909,289	+		CSW01_13655	0.45	-0.6
2,909,297	-		CSW01_13655	0.45	+0.7
2,909,299	+		CSW01_13655	0.46	-0.7
2,909,304	+		CSW01_13655	0.46	+0.3
2,909,307	-		CSW01_13655	0.46	+0.0
2,909,307	-		CSW01_13655	0.46	-1.0
2,909,322	+		CSW01_13655	0.47	+2.3
2,909,365	+		CSW01_13655	0.49	+0.3
2,909,373	-		CSW01_13655	0.50	-0.6
2,909,379	-		CSW01_13655	0.50	-0.5
2,909,391	+		CSW01_13655	0.51	-1.2
2,909,399	+		CSW01_13655	0.51	-0.2
2,909,399	+		CSW01_13655	0.51	+0.3
2,909,399	+		CSW01_13655	0.51	+0.4
2,909,399	+		CSW01_13655	0.51	+0.4
2,909,400	-		CSW01_13655	0.52	-0.6
2,909,407	-		CSW01_13655	0.52	-0.0
2,909,427	-		CSW01_13655	0.53	+0.7
2,909,456	+		CSW01_13655	0.55	-0.5
2,909,464	-		CSW01_13655	0.55	-0.2
2,909,469	-		CSW01_13655	0.56	+0.5
2,909,515	+		CSW01_13655	0.58	+1.4
2,909,516	+		CSW01_13655	0.58	-0.0
2,909,524	-		CSW01_13655	0.59	-0.1
2,909,562	+		CSW01_13655	0.61	-1.0
2,909,570	-		CSW01_13655	0.62	+1.2
2,909,572	+		CSW01_13655	0.62	-1.5
2,909,649	-		CSW01_13655	0.66	-0.5
2,909,659	-		CSW01_13655	0.67	-0.8
2,909,659	-		CSW01_13655	0.67	-0.4
2,909,661	-		CSW01_13655	0.67	-0.7
2,909,672	-		CSW01_13655	0.67	-0.3
2,909,704	-		CSW01_13655	0.69	-0.3
2,909,855	-		CSW01_13655	0.78	-0.2
2,909,882	-		CSW01_13655	0.80	-0.0
2,909,959	+		CSW01_13655	0.84	+0.9
2,910,035	-		CSW01_13655	0.89	+0.4
2,910,037	+		CSW01_13655	0.89	-0.0
2,910,074	+				+0.2
2,910,074	+				+0.8
2,910,074	+				-0.1
2,910,074	+				-0.2
2,910,074	+				+2.3
2,910,082	-				+0.1
2,910,082	-				-0.5
2,910,082	-				+0.0
2,910,082	-				-0.2
2,910,092	-				-2.0
2,910,111	-				+0.2
2,910,163	-				-0.1
2,910,199	-				-0.6
2,910,211	+				+0.3
2,910,211	+				+0.3
2,910,211	+				-0.3
2,910,219	-				-0.2
2,910,225	+				+0.1
2,910,444	-		CSW01_13660	0.18	-0.5
2,910,492	+		CSW01_13660	0.25	-0.4
2,910,546	-		CSW01_13660	0.33	-0.7
2,910,553	+		CSW01_13660	0.34	+0.2
2,910,561	-		CSW01_13660	0.35	-0.3
2,910,561	-		CSW01_13660	0.35	-0.5
2,910,573	+		CSW01_13660	0.37	-0.2
2,910,581	-		CSW01_13660	0.38	-0.7
2,910,581	-		CSW01_13660	0.38	+1.4
2,910,601	-		CSW01_13660	0.41	+0.3
2,910,610	-		CSW01_13660	0.43	-0.9
2,910,618	+		CSW01_13660	0.44	-0.6
2,910,626	-		CSW01_13660	0.45	-1.0
2,910,791	+		CSW01_13660	0.70	-0.0
2,910,799	-		CSW01_13660	0.71	-0.2
2,910,952	+				+0.4
2,910,953	+				-0.0
2,910,953	+				-0.4
2,910,960	-				+0.0
2,910,961	-				+0.4
2,910,961	-				+1.5
2,910,961	-				+1.1
2,910,961	-				+0.2
2,910,978	+				-0.2
2,910,986	-				-0.1
2,910,986	-				-0.2
2,910,986	-				-0.5
2,910,996	-				-0.6
2,911,085	+				+0.1
2,911,093	-				+0.9
2,911,190	+				+0.3
2,911,198	-				+0.3