Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_11985 and CSW01_11990 overlap by 4 nucleotides CSW01_11990 and CSW01_11995 are separated by 26 nucleotides CSW01_11995 and CSW01_12000 are separated by 314 nucleotides
CSW01_11985: CSW01_11985 - hypothetical protein, at 2,554,256 to 2,554,738
_11985
CSW01_11990: CSW01_11990 - ribonuclease activity regulator protein RraA, at 2,554,735 to 2,555,223
_11990
CSW01_11995: CSW01_11995 - DUF3293 domain-containing protein, at 2,555,250 to 2,555,633
_11995
CSW01_12000: CSW01_12000 - two-component system response regulator ArcA, at 2,555,948 to 2,556,664
_12000
Position (kb)
2555
2556 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2554.329 kb on + strand, within CSW01_11985 at 2554.329 kb on + strand, within CSW01_11985 at 2554.329 kb on + strand, within CSW01_11985 at 2554.337 kb on - strand, within CSW01_11985 at 2554.339 kb on + strand, within CSW01_11985 at 2554.342 kb on - strand, within CSW01_11985 at 2554.342 kb on - strand, within CSW01_11985 at 2554.346 kb on + strand, within CSW01_11985 at 2554.347 kb on - strand, within CSW01_11985 at 2554.360 kb on + strand, within CSW01_11985 at 2554.360 kb on + strand, within CSW01_11985 at 2554.360 kb on + strand, within CSW01_11985 at 2554.429 kb on + strand, within CSW01_11985 at 2554.464 kb on + strand, within CSW01_11985 at 2554.474 kb on + strand, within CSW01_11985 at 2554.482 kb on - strand, within CSW01_11985 at 2554.509 kb on + strand, within CSW01_11985 at 2554.514 kb on + strand, within CSW01_11985 at 2554.519 kb on + strand, within CSW01_11985 at 2554.526 kb on - strand, within CSW01_11985 at 2554.526 kb on - strand, within CSW01_11985 at 2554.527 kb on - strand, within CSW01_11985 at 2554.527 kb on - strand, within CSW01_11985 at 2554.527 kb on - strand, within CSW01_11985 at 2554.527 kb on - strand, within CSW01_11985 at 2554.644 kb on + strand, within CSW01_11985 at 2554.644 kb on + strand, within CSW01_11985 at 2554.706 kb on + strand at 2554.740 kb on - strand at 2554.742 kb on + strand at 2554.762 kb on - strand at 2554.811 kb on - strand, within CSW01_11990 at 2554.840 kb on + strand, within CSW01_11990 at 2554.840 kb on + strand, within CSW01_11990 at 2554.840 kb on + strand, within CSW01_11990 at 2554.845 kb on + strand, within CSW01_11990 at 2554.845 kb on + strand, within CSW01_11990 at 2554.848 kb on - strand, within CSW01_11990 at 2554.853 kb on - strand, within CSW01_11990 at 2554.853 kb on - strand, within CSW01_11990 at 2554.884 kb on - strand, within CSW01_11990 at 2554.999 kb on + strand, within CSW01_11990 at 2555.007 kb on - strand, within CSW01_11990 at 2555.007 kb on - strand, within CSW01_11990 at 2555.007 kb on - strand, within CSW01_11990 at 2555.042 kb on + strand, within CSW01_11990 at 2555.087 kb on - strand, within CSW01_11990 at 2555.087 kb on - strand, within CSW01_11990 at 2555.132 kb on - strand, within CSW01_11990 at 2555.199 kb on + strand at 2555.199 kb on + strand at 2555.285 kb on - strand at 2555.324 kb on + strand, within CSW01_11995 at 2555.332 kb on - strand, within CSW01_11995 at 2555.428 kb on + strand, within CSW01_11995 at 2555.513 kb on + strand, within CSW01_11995 at 2555.529 kb on + strand, within CSW01_11995 at 2555.606 kb on + strand at 2555.614 kb on - strand at 2555.618 kb on + strand at 2555.762 kb on + strand at 2555.770 kb on - strand at 2556.163 kb on + strand, within CSW01_12000 at 2556.257 kb on + strand, within CSW01_12000 at 2556.452 kb on + strand, within CSW01_12000 at 2556.580 kb on + strand, within CSW01_12000 at 2556.588 kb on - strand, within CSW01_12000 at 2556.590 kb on + strand, within CSW01_12000
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A remove 2,554,329 + CSW01_11985 0.15 +0.6 2,554,329 + CSW01_11985 0.15 -0.5 2,554,329 + CSW01_11985 0.15 +0.6 2,554,337 - CSW01_11985 0.17 -0.1 2,554,339 + CSW01_11985 0.17 +0.0 2,554,342 - CSW01_11985 0.18 -0.1 2,554,342 - CSW01_11985 0.18 -0.4 2,554,346 + CSW01_11985 0.19 -0.5 2,554,347 - CSW01_11985 0.19 +1.6 2,554,360 + CSW01_11985 0.22 +0.1 2,554,360 + CSW01_11985 0.22 -0.6 2,554,360 + CSW01_11985 0.22 -0.3 2,554,429 + CSW01_11985 0.36 +0.3 2,554,464 + CSW01_11985 0.43 -1.1 2,554,474 + CSW01_11985 0.45 +0.1 2,554,482 - CSW01_11985 0.47 +0.7 2,554,509 + CSW01_11985 0.52 +0.9 2,554,514 + CSW01_11985 0.53 +0.8 2,554,519 + CSW01_11985 0.54 +0.6 2,554,526 - CSW01_11985 0.56 +1.0 2,554,526 - CSW01_11985 0.56 -0.1 2,554,527 - CSW01_11985 0.56 +0.6 2,554,527 - CSW01_11985 0.56 -0.1 2,554,527 - CSW01_11985 0.56 +0.2 2,554,527 - CSW01_11985 0.56 +0.1 2,554,644 + CSW01_11985 0.80 +0.3 2,554,644 + CSW01_11985 0.80 +0.2 2,554,706 + +1.1 2,554,740 - -0.2 2,554,742 + -0.2 2,554,762 - +0.3 2,554,811 - CSW01_11990 0.16 +0.7 2,554,840 + CSW01_11990 0.21 +0.1 2,554,840 + CSW01_11990 0.21 -0.6 2,554,840 + CSW01_11990 0.21 -0.5 2,554,845 + CSW01_11990 0.22 +0.2 2,554,845 + CSW01_11990 0.22 -0.6 2,554,848 - CSW01_11990 0.23 -0.1 2,554,853 - CSW01_11990 0.24 -0.4 2,554,853 - CSW01_11990 0.24 +3.2 2,554,884 - CSW01_11990 0.30 -0.2 2,554,999 + CSW01_11990 0.54 -0.2 2,555,007 - CSW01_11990 0.56 -0.3 2,555,007 - CSW01_11990 0.56 -0.4 2,555,007 - CSW01_11990 0.56 +0.3 2,555,042 + CSW01_11990 0.63 +1.7 2,555,087 - CSW01_11990 0.72 -0.3 2,555,087 - CSW01_11990 0.72 +0.1 2,555,132 - CSW01_11990 0.81 -0.3 2,555,199 + -0.4 2,555,199 + -0.4 2,555,285 - -0.4 2,555,324 + CSW01_11995 0.19 -0.1 2,555,332 - CSW01_11995 0.21 +0.2 2,555,428 + CSW01_11995 0.46 +0.1 2,555,513 + CSW01_11995 0.68 +0.9 2,555,529 + CSW01_11995 0.73 +0.6 2,555,606 + +0.3 2,555,614 - +0.0 2,555,618 + +0.3 2,555,762 + +0.0 2,555,770 - +1.2 2,556,163 + CSW01_12000 0.30 -0.8 2,556,257 + CSW01_12000 0.43 +0.2 2,556,452 + CSW01_12000 0.70 -1.4 2,556,580 + CSW01_12000 0.88 +0.2 2,556,588 - CSW01_12000 0.89 -0.4 2,556,590 + CSW01_12000 0.90 +0.8
Or see this region's nucleotide sequence