Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08990

Experiment: LB_0.5%bileacids_Anaerobic_120MIN_ZN13A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_08975 and CSW01_08980 are separated by 134 nucleotidesCSW01_08980 and CSW01_08985 are separated by 48 nucleotidesCSW01_08985 and CSW01_08990 are separated by 54 nucleotidesCSW01_08990 and CSW01_08995 are separated by 18 nucleotidesCSW01_08995 and CSW01_09000 overlap by 14 nucleotides CSW01_08975: CSW01_08975 - phage tail tape measure protein, at 1,937,501 to 1,938,541 _08975 CSW01_08980: CSW01_08980 - hypothetical protein, at 1,938,676 to 1,939,035 _08980 CSW01_08985: CSW01_08985 - 6-phospho-beta-glucosidase, at 1,939,084 to 1,939,461 _08985 CSW01_08990: CSW01_08990 - glyoxalase, at 1,939,516 to 1,940,094 _08990 CSW01_08995: CSW01_08995 - transcriptional regulator, at 1,940,113 to 1,940,433 _08995 CSW01_09000: CSW01_09000 - transcriptional regulator, at 1,940,420 to 1,940,794 _09000 Position (kb) 1939 1940 1941Strain fitness (log2 ratio) -1 0 1 2at 1938.716 kb on + strand, within CSW01_08980at 1938.861 kb on - strand, within CSW01_08980at 1938.945 kb on + strand, within CSW01_08980at 1938.958 kb on - strand, within CSW01_08980at 1938.980 kb on - strand, within CSW01_08980at 1939.015 kb on + strandat 1939.070 kb on + strandat 1939.070 kb on + strandat 1939.078 kb on - strandat 1939.078 kb on - strandat 1939.164 kb on - strand, within CSW01_08985at 1939.274 kb on - strand, within CSW01_08985at 1939.383 kb on + strand, within CSW01_08985at 1939.472 kb on + strandat 1939.472 kb on + strandat 1939.538 kb on - strandat 1939.595 kb on + strand, within CSW01_08990at 1939.722 kb on - strand, within CSW01_08990at 1939.788 kb on + strand, within CSW01_08990at 1939.796 kb on - strand, within CSW01_08990at 1939.900 kb on + strand, within CSW01_08990at 1939.908 kb on - strand, within CSW01_08990at 1939.908 kb on - strand, within CSW01_08990at 1939.952 kb on - strand, within CSW01_08990at 1940.202 kb on + strand, within CSW01_08995at 1940.347 kb on + strand, within CSW01_08995at 1940.353 kb on + strand, within CSW01_08995at 1940.365 kb on + strand, within CSW01_08995at 1940.442 kb on - strandat 1940.577 kb on + strand, within CSW01_09000at 1940.585 kb on - strand, within CSW01_09000at 1940.585 kb on - strand, within CSW01_09000at 1940.585 kb on - strand, within CSW01_09000at 1940.686 kb on + strand, within CSW01_09000at 1940.734 kb on - strand, within CSW01_09000at 1940.788 kb on - strandat 1940.809 kb on - strandat 1940.809 kb on - strandat 1940.827 kb on + strandat 1940.827 kb on + strandat 1940.827 kb on + strandat 1940.827 kb on + strandat 1940.835 kb on - strandat 1940.835 kb on - strandat 1940.835 kb on - strandat 1940.835 kb on - strandat 1940.859 kb on + strandat 1940.862 kb on - strandat 1940.916 kb on + strandat 1940.949 kb on + strandat 1940.998 kb on - strandat 1941.019 kb on + strandat 1941.019 kb on + strandat 1941.024 kb on + strandat 1941.027 kb on - strandat 1941.042 kb on + strandat 1941.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
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1,938,716 + CSW01_08980 0.11 +0.2
1,938,861 - CSW01_08980 0.51 +2.3
1,938,945 + CSW01_08980 0.75 -0.2
1,938,958 - CSW01_08980 0.78 -0.5
1,938,980 - CSW01_08980 0.84 +0.2
1,939,015 + -0.0
1,939,070 + +0.3
1,939,070 + +0.4
1,939,078 - +0.7
1,939,078 - +0.8
1,939,164 - CSW01_08985 0.21 +0.6
1,939,274 - CSW01_08985 0.50 +0.4
1,939,383 + CSW01_08985 0.79 +0.1
1,939,472 + +0.2
1,939,472 + +0.2
1,939,538 - -1.6
1,939,595 + CSW01_08990 0.14 +2.1
1,939,722 - CSW01_08990 0.36 +0.2
1,939,788 + CSW01_08990 0.47 +0.1
1,939,796 - CSW01_08990 0.48 -0.3
1,939,900 + CSW01_08990 0.66 -0.4
1,939,908 - CSW01_08990 0.68 -0.7
1,939,908 - CSW01_08990 0.68 +0.1
1,939,952 - CSW01_08990 0.75 -0.0
1,940,202 + CSW01_08995 0.28 -0.1
1,940,347 + CSW01_08995 0.73 +0.0
1,940,353 + CSW01_08995 0.75 +1.1
1,940,365 + CSW01_08995 0.79 -0.9
1,940,442 - +0.0
1,940,577 + CSW01_09000 0.42 +0.7
1,940,585 - CSW01_09000 0.44 +0.3
1,940,585 - CSW01_09000 0.44 +1.0
1,940,585 - CSW01_09000 0.44 -0.2
1,940,686 + CSW01_09000 0.71 +0.1
1,940,734 - CSW01_09000 0.84 +1.4
1,940,788 - -0.3
1,940,809 - -0.8
1,940,809 - +0.2
1,940,827 + -0.1
1,940,827 + +0.0
1,940,827 + -0.9
1,940,827 + +0.3
1,940,835 - -0.4
1,940,835 - -0.1
1,940,835 - -0.6
1,940,835 - +0.1
1,940,859 + -0.9
1,940,862 - +2.5
1,940,916 + +0.2
1,940,949 + -0.1
1,940,998 - -0.4
1,941,019 + -0.2
1,941,019 + +0.5
1,941,024 + +0.4
1,941,027 - -0.3
1,941,042 + +0.1
1,941,051 - +0.5

Or see this region's nucleotide sequence